Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001574.1

Orthogroup ID

OG0012225

Physical Location & Seq

Genomic Coordinates Forward (+)

18184 .. 21488

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001574.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgatggtggcgaaggacgagtggacgagtgcggcgatgaccgacgacgtcctcgtcgtcgagctactgctgcggctgaaggagtcgcgagcggcgtcatcctcgtcgtcttcgcttctccactatcccttcacggccaagtccgtgattccgcggtggggcctccggctgccacgcagcaaggcggcggcggcggcggcggcgtcttcctcgagatgcgacgccgtttgccggaggaacaacagtaagaaggacgactcgactagatctccggctgccacgcagcaaggcggcggcggcggcggcgtcttcctcgagatgcgacgccgtttgccggaggaacaacacggcggtggctcaccttccggcactgccgatggattcgaagagtccagccgccccagatccaagggtactgctacatatgaatccactagcaccaccaatggaatcaagagggcaaggaagaagaagtcatatgatgagcttaaagaagaggaaacttcgttgttgaaagaaaggaccaatttgagaaaggaaatagcgacattacaggctacttttaaagagcaaagagccaaaaatgagcacttaaagagagcgaagcttgacttgaacttgcattcttctgccacaaatttgattgcgtactttgatggagcggagaacgctattgccagtcaaccccatccgagaatagcacctcctagtttcggacactttccttcacatttgctttcacatgccacaccgtatgttaatccgtatcctcaactggattcgtgcgatgaacacaaggctgcttcatcatccgggaacaattctttcgtgctgcctgatctgaacatggtgcctttcgaggaggactctggttcggaaatgctatacgggatgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.6

Weight (kDa)

8.86

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32030 AT4G32030
fragaria_vesca	FvH4_2g28270 FvH4_2g28270
malus_domestica	MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica	Prupe.1G486600_v2.0.a1
pyrus_communis	pycom08g13350 pycom15g11840
rosa_chinensis	RchiOBHm_Chr6g0297181
rosa_laevigata	RLG00000011624
rosa_multiflora	Rmu_sc0001574.1_g000005
rosa_roxburghii	Rroxscaffold_7G00170810
rosa_rugosa	Rorug06G0269600
rosa_samantha	Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana	Rw6G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AatII	GACGTC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	850
AccBSI	CCGCTC	2 cut(s)	92, 662
AccII	CGCG	2 cut(s)	88, 154
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
AfaI	GTAC	2 cut(s)	415, 650
AfiI	CCNNNNNNNGG	4 cut(s)	158, 231, 334, 713
AgsI	TTSAA	2 cut(s)	514, 616
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	4 cut(s)	64, 487, 607, 897
AluI	AGCT	4 cut(s)	64, 487, 607, 897
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	2 cut(s)	211, 314
AoxI	GGCC	2 cut(s)	135, 160
ApeKI	GCWGC	7 cut(s)	70, 169, 177, 275, 283, 800, 832
ApoI	RAATTY	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	160, 522
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	384
AvaI	CYCGRG	2 cut(s)	211, 314
AvaII	GGWCC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	850
BbsI	GAAGAC	3 cut(s)	102, 198, 301
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	7 cut(s)	57, 156, 189, 262, 295, 787, 819
BccI	CCATC	3 cut(s)	371, 650, 696
BceAI	ACGGC	4 cut(s)	150, 209, 312, 364
BciVI	GTATCC	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	814
BfaI	CTAG	3 cut(s)	264, 435, 708
BfuI	GTATCC	1 cut(s)	777
BglII	AGATCT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	814
Bme18I	GGWCC	1 cut(s)	522
BmeT110I	CYCGRG	2 cut(s)	211, 314
BmgT120I	GGNCC	2 cut(s)	160, 522
BmiI	GGNNCC	2 cut(s)	161, 852
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	2 cut(s)	206, 309
BpiI	GAAGAC	3 cut(s)	102, 198, 301
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
Bpu14I	TTCGAA	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	814
BsaHI	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
BsaJI	CCNNGG	2 cut(s)	152, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 231, 334, 713
Bse1I	ACTGG	2 cut(s)	678, 780
BseDI	CCNNGG	2 cut(s)	152, 408
BseGI	GGATG	4 cut(s)	98, 688, 809, 897
BseLI	CCNNNNNNNGG	4 cut(s)	158, 231, 334, 713
BseNI	ACTGG	2 cut(s)	678, 780
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	7 cut(s)	57, 156, 189, 262, 295, 787, 819
Bsh1236I	CGCG	2 cut(s)	88, 154
BshFI	GGCC	2 cut(s)	137, 162
BshNI	GGYRCC	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	2 cut(s)	211, 314
BsiSI	CCGG	6 cut(s)	166, 232, 272, 335, 366, 813
BslI	CCNNNNNNNGG	4 cut(s)	158, 231, 334, 713
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	137, 162
BsoBI	CYCGRG	2 cut(s)	211, 314
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	266, 404, 838
Bsp68I	TCGCGA	1 cut(s)	88
BspANI	GGCC	2 cut(s)	137, 162
BspFNI	CGCG	2 cut(s)	88, 154
BspLI	GGNNCC	2 cut(s)	161, 852
BspPI	GGATC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	850
BsrBI	CCGCTC	2 cut(s)	92, 662
BsrI	ACTGG	2 cut(s)	678, 780
BssECI	CCNNGG	2 cut(s)	152, 408
BssMI	GATC	3 cut(s)	266, 404, 838
BssNI	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	245, 753
Bst6I	CTCTTC	2 cut(s)	381, 489
BstACI	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	4 cut(s)	98, 688, 809, 897
BstFNI	CGCG	2 cut(s)	88, 154
BstKTI	GATC	3 cut(s)	269, 407, 841
BstMBI	GATC	3 cut(s)	266, 404, 838
BstMWI	GCNNNNNNNGC	9 cut(s)	70, 191, 194, 197, 200, 297, 300, 303, 668
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	812
BstUI	CGCG	2 cut(s)	88, 154
BstV1I	GCAGC	7 cut(s)	57, 156, 189, 262, 295, 787, 819
BstV2I	GAAGAC	3 cut(s)	102, 198, 301
BstX2I	RGATCY	2 cut(s)	266, 404
BstYI	RGATCY	2 cut(s)	266, 404
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	137, 162
BtgI	CCRYGG	1 cut(s)	152
BtgZI	GCGATG	2 cut(s)	50, 801
BtsCI	GGATG	4 cut(s)	98, 688, 809, 897
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
BtuMI	TCGCGA	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	160, 522
Cfr42I	CCGCGG	1 cut(s)	155
CseI	GACGC	5 cut(s)	84, 192, 230, 295, 333
Csp6I	GTAC	2 cut(s)	414, 649
CviAII	CATG	2 cut(s)	743, 847
CviQI	GTAC	2 cut(s)	414, 649
DpnI	GATC	3 cut(s)	268, 406, 840
DpnII	GATC	3 cut(s)	266, 404, 838
DraI	TTTAAA	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	381, 489
EarI	CTCTTC	2 cut(s)	381, 489
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	2 cut(s)	211, 314
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	746, 850
FaiI	YATR	8 cut(s)	424, 426, 478, 480, 744, 756, 848, 886
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	2 cut(s)	742, 846
FauNDI	CATATG	2 cut(s)	424, 478
FokI	GGATG	3 cut(s)	85, 675, 796
FspBI	CTAG	3 cut(s)	264, 435, 708
HaeIII	GGCC	2 cut(s)	137, 162
HapII	CCGG	6 cut(s)	166, 232, 272, 335, 366, 813
HgaI	GACGC	5 cut(s)	84, 192, 230, 295, 333
Hin1I	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
Hin1II	CATG	2 cut(s)	746, 850
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	9 cut(s)	83, 148, 257, 381, 389, 428, 450, 779, 866
HpaII	CCGG	6 cut(s)	166, 232, 272, 335, 366, 813
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	24, 683
Hpy188I	TCNGA	4 cut(s)	693, 716, 843, 877
Hpy188III	TCNNGA	4 cut(s)	87, 213, 316, 454
Hpy8I	GTNNAC	2 cut(s)	24, 683
Hpy99I	CGWCG	7 cut(s)	47, 50, 59, 62, 109, 224, 327
HpyAV	CCTTC	6 cut(s)	7, 73, 139, 244, 372, 735
HpyCH4III	ACNGT	2 cut(s)	245, 753
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	9 cut(s)	70, 191, 194, 197, 200, 297, 300, 303, 668
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	6 cut(s)	48, 95, 203, 222, 306, 325
Hsp92II	CATG	2 cut(s)	746, 850
KspI	CCGCGG	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	266, 404, 838
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	7 cut(s)	57, 156, 189, 262, 295, 787, 819
LweI	GCATC	2 cut(s)	206, 309
MaeI	CTAG	3 cut(s)	264, 435, 708
MaeII	ACGT	1 cut(s)	48
MalI	GATC	3 cut(s)	268, 406, 840
MbiI	CCGCTC	2 cut(s)	92, 662
MboI	GATC	3 cut(s)	266, 404, 838
MboII	GAAGA	8 cut(s)	102, 198, 301, 398, 478, 481, 506, 618
MflI	RGATCY	2 cut(s)	266, 404
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	3 cut(s)	526, 637, 820
MlyI	GAGTC	4 cut(s)	92, 251, 398, 860
MseI	TTAA	4 cut(s)	489, 564, 593, 759
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	6 cut(s)	166, 232, 272, 335, 366, 813
MspR9I	CCNGG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	622
MvnI	CGCG	2 cut(s)	88, 154
MwoI	GCNNNNNNNGC	9 cut(s)	70, 191, 194, 197, 200, 297, 300, 303, 668
NciI	CCSGG	1 cut(s)	814
NdeI	CATATG	2 cut(s)	424, 478
NdeII	GATC	3 cut(s)	266, 404, 838
NlaIII	CATG	2 cut(s)	746, 850
NlaIV	GGNNCC	2 cut(s)	161, 852
NruI	TCGCGA	1 cut(s)	88
NspI	RCATGY	1 cut(s)	746
NspV	TTCGAA	1 cut(s)	384
OliI	CACNNNNGTG	1 cut(s)	351
PaeR7I	CTCGAG	2 cut(s)	211, 314
PcsI	WCGNNNNNNNCGW	4 cut(s)	32, 51, 54, 92
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	5 cut(s)	148, 381, 428, 450, 779
PflFI	GACNNNGTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	812
PleI	GAGTC	4 cut(s)	91, 251, 397, 860
PpsI	GAGTC	4 cut(s)	91, 251, 397, 860
PspN4I	GGNNCC	2 cut(s)	161, 852
PspPI	GGNCC	2 cut(s)	160, 522
PsuI	RGATCY	2 cut(s)	266, 404
PsyI	GACNNNGTC	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	88
RsaI	GTAC	2 cut(s)	415, 650
RsaNI	GTAC	2 cut(s)	414, 649
RseI	CAYNNNNRTG	1 cut(s)	351
SacII	CCGCGG	1 cut(s)	155
SaqAI	TTAA	4 cut(s)	489, 564, 593, 759
Sau3AI	GATC	3 cut(s)	266, 404, 838
Sau96I	GGNCC	2 cut(s)	160, 522
SchI	GAGTC	4 cut(s)	92, 251, 398, 860
ScrFI	CCNGG	1 cut(s)	814
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	7 cut(s)	51, 66, 364, 489, 609, 706, 899
SfaNI	GCATC	2 cut(s)	206, 309
Sfr274I	CTCGAG	2 cut(s)	211, 314
Sfr303I	CCGCGG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	522
SlaI	CTCGAG	2 cut(s)	211, 314
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	211, 314
SmoI	CTYRAG	2 cut(s)	211, 314
Sse9I	AATT	3 cut(s)	526, 637, 820
SspMI	CTAG	3 cut(s)	264, 435, 708
StyD4I	CCNGG	1 cut(s)	812
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	245, 753
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	6 cut(s)	60, 212, 260, 315, 384, 858
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	526, 637, 820
TfiI	GAWTC	5 cut(s)	148, 381, 428, 450, 779
Tru1I	TTAA	4 cut(s)	489, 564, 593, 759
Tru9I	TTAA	4 cut(s)	489, 564, 593, 759
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	7 cut(s)	70, 169, 177, 275, 283, 800, 832
TspDTI	ATGAA	3 cut(s)	441, 795, 804
TspGWI	ACGGA	2 cut(s)	133, 753
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	746
XhoI	CTCGAG	2 cut(s)	211, 314
XspI	CTAG	3 cut(s)	264, 435, 708
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.