Prupe.1G486600_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012225
Physical Location & Seq
Reverse (-)
40508003 .. 40511745
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G486600.1

Sequence Viewer

Length: 810 bp
ATGATGGTGGTCAAAGACGAGTGGATGAGAGCGGCGATGACCGACGACATGCTCGTCGTGGAGCTTCTGGTGCGGCTCAAGCAGTCGCAGACGGCCGCCTCGTCTTCCTCGTCTCCGTTGTTGGAGTCGATTCCGCTCAGGTGGGGCATCCGGCTGCCACGCTCCAAGTCAGCGTCATCGGCGTCCAGATTCGACGGCGTCGTTTCGCGGCAGAGGAACATCAGCAAGCACGGCACCGATTCCGCCACTAGATGCAGCCCCACCACGCCGCTCTCCTGGAGCGGCGGCACCGGCTCCCCCTCCGCCACCGCCGACGGCTTCGAAGAGTCCAGCTGTCCCAGATCCAAGGGAACTGCTACGTATGAATCCACCAGCACCACCACTGCCACCAAGAGGGCAAGGAGAAAGAAGACATTTGCTGAGCTTAAGGAGGAGGAAAGTTCGTTGTTGAAGGAAAGGACATATTTGGAAAAGGAAATAGCGACCTTACAAGCAACTTTTAAGCAACAAAGAGCCAAAAATGAGAACTTTAAGAGAATCAAGCTCGACTTGAACATGCATCCTGCTAGGAATTTGAGCGCAAACTTTGATGGAGCAGGGAAAGCAATTTCCAGTCAACCCCACGAGAGAACAGCGTCGAGCACCTACGGCATTCCCTCAAATTTGCCTCCACATGCAGAAGCGCAATCCGATTCTTACAGTGAACGCGAGGCCGTTTCAGCCCGAGACAATTCTTTCTTGCTGCCTGATCTAAACATGGAGCCGTGCGGAGAGGAATCTGGTTCCGAAACGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.47

Weight (kDa)

8.7

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AccB1I GGYRCC 2 cut(s) 233, 287
AccBSI CCGCTC 4 cut(s) 32, 136, 271, 282
AccII CGCG 2 cut(s) 208, 708
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 571, 661
AcyI GRCGYC 2 cut(s) 182, 198
AfiI CCNNNNNNNGG 1 cut(s) 393
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 451, 553
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 5 cut(s) 64, 333, 424, 544, 807
AluI AGCT 5 cut(s) 64, 333, 424, 544, 807
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 2 cut(s) 117, 720
AlwI GGATC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 723
AoxI GGCC 2 cut(s) 93, 711
ApeKI GCWGC 3 cut(s) 154, 255, 742
ApoI RAATTY 2 cut(s) 571, 661
AspLEI GCGC 2 cut(s) 581, 685
AsuII TTCGAA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 723
BanI GGYRCC 2 cut(s) 233, 287
BauI CACGAG 1 cut(s) 623
BbsI GAAGAC 2 cut(s) 96, 416
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 3 cut(s) 141, 267, 729
BccI CCATC 1 cut(s) 584
BceAI ACGGC 7 cut(s) 108, 211, 247, 331, 664, 698, 748
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 117, 720
BfaI CTAG 2 cut(s) 249, 567
BfrI CTTAAG 1 cut(s) 425
BlpI GCTNAGC 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 723
BmiI GGNNCC 5 cut(s) 235, 289, 295, 762, 784
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 3 cut(s) 156, 242, 568
BpiI GAAGAC 2 cut(s) 96, 416
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 2 cut(s) 182, 198
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 4 cut(s) 30, 147, 559, 807
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 151, 411
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 1 cut(s) 446
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 141, 267, 729
Bsh1236I CGCG 2 cut(s) 208, 708
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 95, 713
BshNI GGYRCC 2 cut(s) 233, 287
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 723
BsiSI CCGG 2 cut(s) 151, 291
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 2 cut(s) 117, 720
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 2 cut(s) 95, 713
BsoBI CYCGRG 1 cut(s) 723
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 2 cut(s) 341, 748
Bsp1720I GCTNAGC 1 cut(s) 420
BspANI GGCC 2 cut(s) 95, 713
BspCNI CTCAG 2 cut(s) 150, 412
BspFNI CGCG 2 cut(s) 208, 708
BspLI GGNNCC 5 cut(s) 235, 289, 295, 762, 784
BspPI GGATC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 321
BspT107I GGYRCC 2 cut(s) 233, 287
BspTI CTTAAG 1 cut(s) 425
BsrBI CCGCTC 4 cut(s) 32, 136, 271, 282
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 341, 748
BssNI GRCGYC 2 cut(s) 182, 198
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 2 cut(s) 182, 198
BstAFI CTTAAG 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 137, 420
BstF5I GGATG 4 cut(s) 30, 147, 559, 807
BstFNI CGCG 2 cut(s) 208, 708
BstHHI GCGC 2 cut(s) 581, 685
BstKTI GATC 2 cut(s) 344, 751
BstMAI GTCTC 2 cut(s) 117, 720
BstMBI GATC 2 cut(s) 341, 748
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 8 cut(s) 70, 79, 179, 231, 291, 602, 648, 719
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 3 cut(s) 52, 559, 677
BstSCI CCNGG 1 cut(s) 275
BstSNI TACGTA 1 cut(s) 360
BstUI CGCG 2 cut(s) 208, 708
BstV1I GCAGC 3 cut(s) 141, 267, 729
BstV2I GAAGAC 2 cut(s) 96, 416
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BstZI CGGCCG 1 cut(s) 93
BsuRI GGCC 2 cut(s) 95, 713
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 4 cut(s) 30, 147, 559, 807
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 706
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 2 cut(s) 581, 685
Cfr10I RCCGGY 1 cut(s) 290
CseI GACGC 4 cut(s) 162, 171, 187, 624
CviAII CATG 4 cut(s) 49, 556, 674, 757
DdeI CTNAG 2 cut(s) 137, 420
DpnI GATC 2 cut(s) 343, 750
DpnII GATC 2 cut(s) 341, 748
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 232, 292
EclXI CGGCCG 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 4 cut(s) 52, 559, 677, 760
FaiI YATR 7 cut(s) 50, 363, 463, 557, 675, 758, 796
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 321
FatI CATG 4 cut(s) 48, 555, 673, 756
FokI GGATG 3 cut(s) 37, 134, 546
FspBI CTAG 2 cut(s) 249, 567
GlaI GCGC 2 cut(s) 580, 684
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 2 cut(s) 95, 713
HapII CCGG 2 cut(s) 151, 291
HgaI GACGC 4 cut(s) 162, 171, 187, 624
HhaI GCGC 2 cut(s) 581, 685
Hin1I GRCGYC 2 cut(s) 182, 198
Hin1II CATG 4 cut(s) 52, 559, 677, 760
Hin6I GCGC 2 cut(s) 579, 683
HinP1I GCGC 2 cut(s) 579, 683
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HinfI GANTC 9 cut(s) 125, 130, 189, 239, 326, 365, 537, 692, 776
HpaII CCGG 2 cut(s) 151, 291
Hpy166II GTNNAC 2 cut(s) 617, 704
Hpy188I TCNGA 2 cut(s) 691, 787
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 617, 704
Hpy99I CGWCG 6 cut(s) 47, 59, 197, 203, 317, 640
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 255, 559, 677
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 79, 179, 231, 291, 602, 648, 719
HpyF3I CTNAG 2 cut(s) 137, 420
HpySE526I ACGT 1 cut(s) 359
Hsp92I GRCGYC 2 cut(s) 182, 198
Hsp92II CATG 4 cut(s) 52, 559, 677, 760
HspAI GCGC 2 cut(s) 579, 683
Kzo9I GATC 2 cut(s) 341, 748
LmnI GCTCC 6 cut(s) 61, 167, 279, 299, 593, 760
Lsp1109I GCAGC 3 cut(s) 141, 267, 729
LweI GCATC 3 cut(s) 156, 242, 568
MaeI CTAG 2 cut(s) 249, 567
MaeII ACGT 1 cut(s) 359
MalI GATC 2 cut(s) 343, 750
MbiI CCGCTC 4 cut(s) 32, 136, 271, 282
MboI GATC 2 cut(s) 341, 748
MboII GAAGA 3 cut(s) 96, 335, 421
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 4 cut(s) 571, 606, 661, 730
MlyI GAGTC 2 cut(s) 134, 335
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 561
MseI TTAA 3 cut(s) 426, 501, 531
MspA1I CMGCKG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 151, 291
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 2 cut(s) 208, 708
MwoI GCNNNNNNNGC 8 cut(s) 70, 79, 179, 231, 291, 602, 648, 719
NdeII GATC 2 cut(s) 341, 748
NlaIII CATG 4 cut(s) 52, 559, 677, 760
NlaIV GGNNCC 5 cut(s) 235, 289, 295, 762, 784
NsiI ATGCAT 1 cut(s) 561
NspI RCATGY 3 cut(s) 52, 559, 677
NspV TTCGAA 1 cut(s) 321
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 98, 107, 198
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 7 cut(s) 130, 189, 239, 365, 537, 692, 776
PflFI GACNNNGTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 275
PleI GAGTC 2 cut(s) 133, 334
PpsI GAGTC 2 cut(s) 133, 334
Ppu21I YACGTR 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 5 cut(s) 235, 289, 295, 762, 784
PsuI RGATCY 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 426, 501, 531
Sau3AI GATC 2 cut(s) 341, 748
SchI GAGTC 2 cut(s) 134, 335
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 644
SetI ASST 9 cut(s) 66, 143, 335, 362, 426, 488, 546, 647, 809
SfaNI GCATC 3 cut(s) 156, 242, 568
SfuI TTCGAA 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 77, 425
SmoI CTYRAG 2 cut(s) 77, 425
SnaBI TACGTA 1 cut(s) 360
Sse9I AATT 4 cut(s) 571, 606, 661, 730
SspMI CTAG 2 cut(s) 249, 567
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 1 cut(s) 362
TaqI TCGA 5 cut(s) 128, 192, 321, 546, 638
TaqII GACCGA 1 cut(s) 56
TasI AATT 4 cut(s) 571, 606, 661, 730
TauI GCSGC 7 cut(s) 35, 76, 98, 211, 271, 285, 288
TfiI GAWTC 7 cut(s) 130, 189, 239, 365, 537, 692, 776
Tru1I TTAA 3 cut(s) 426, 501, 531
Tru9I TTAA 3 cut(s) 426, 501, 531
TscAI CASTG 2 cut(s) 388, 706
TseI GCWGC 3 cut(s) 154, 255, 742
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 2 cut(s) 388, 706
Tth111I GACNNNGTC 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 425
XapI RAATTY 2 cut(s) 571, 661
XceI RCATGY 3 cut(s) 52, 559, 677
XspI CTAG 2 cut(s) 249, 567
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.