FvH4_2g28270

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012225
Physical Location & Seq
Forward (+)
22239307 .. 22242886
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28270.t1

Sequence Viewer

Length: 831 bp
ATGATGGTGGCGAAGGACGACTGGACGAGGGCCGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTCAAGGAGTCACGAGCGGCGACGTCGTCGTCGTCGCTTCTCCAGTCTCGCTTCACGGCCAAATCCGTGCTTCCGCGGTGGGGGATGCGTCTGCCACGTAGCAAGGCGGCGGCGTCCTCGAGATGCGAGGCTGTTTGGAGCAGGAGTAACAAGAGTAAGAAGGACGACTCGACTAGATGCAGCCCTACGACGCCGCTCTCGTGGAGCGGCGGCGGCTCGCCTTCTGGCACTGCCGATGGATTCGAAGAGTCCAGCCGTCCCAGATCCAAGGTTACTGCTGCGTATGAATCCACTAGCACCACTAATGGAATCAAGAGGGCAAGAAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACGAGTTTGAGAAAGGAAATAGCGACATTACAGACTACCTTTAAGGAGCAAAGAGCCAAAAATGAGAACTTAAAGAGAGCGAAGCTAGACTTGAACTTGCACTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCCGAGAACGCTATTGCCAGTCAAGCCCATCAAAGAACAGCACCTCCTAGTTTCAGTCACTTTCCTTCACATTTGCTTTCACATGTCACACCTTATGTTCATCCATATCCACAATTGGATTCCTGCGATGAACACAAGGCTGTTTCGTCATCTGGGAACAATTCTTTCGTGCTACCTGATCTAAACATGGTGCCTTCCGAGGACTCTGGTTCGGAGATTTTGTACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.43

Weight (kDa)

9.26

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 103
AatII GACGTC 2 cut(s) 51, 101
AccB1I GGYRCC 1 cut(s) 784
AccBSI CCGCTC 3 cut(s) 92, 271, 282
AccII CGCG 2 cut(s) 35, 151
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 571
AcyI GRCGYC 4 cut(s) 48, 98, 188, 266
AfaI GTAC 2 cut(s) 584, 818
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 2 cut(s) 448, 550
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 4 cut(s) 64, 421, 541, 828
AluI AGCT 4 cut(s) 64, 421, 541, 828
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 30, 132
ApeKI GCWGC 3 cut(s) 70, 255, 353
ApoI RAATTY 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 30
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 193
BanI GGYRCC 1 cut(s) 784
BauI CACGAG 2 cut(s) 87, 274
BbvI GCAGC 3 cut(s) 57, 267, 340
BccI CCATC 3 cut(s) 305, 584, 630
BceAI ACGGC 2 cut(s) 147, 315
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 4 cut(s) 249, 369, 542, 642
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 2 cut(s) 595, 786
BmsI GCATC 3 cut(s) 150, 188, 242
BpmI CTGGAG 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 173
BsaHI GRCGYC 4 cut(s) 48, 98, 188, 266
BsaJI CCNNGG 3 cut(s) 149, 342, 792
BsaXI ACNNNNNCTCC 6 cut(s) 205, 235, 622, 652, 800, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 26, 118, 612
BseDI CCNNGG 3 cut(s) 149, 342, 792
BseGI GGATG 3 cut(s) 165, 694, 828
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 3 cut(s) 26, 118, 612
BseXI GCAGC 3 cut(s) 57, 267, 340
Bsh1236I CGCG 2 cut(s) 35, 151
BshFI GGCC 2 cut(s) 32, 134
BshNI GGYRCC 1 cut(s) 784
BsiHKCI CYCGRG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 2 cut(s) 32, 134
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 2 cut(s) 338, 772
BspANI GGCC 2 cut(s) 32, 134
BspFNI CGCG 2 cut(s) 35, 151
BspLI GGNNCC 2 cut(s) 595, 786
BspPI GGATC 1 cut(s) 333
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 784
BsrBI CCGCTC 3 cut(s) 92, 271, 282
BsrI ACTGG 3 cut(s) 26, 118, 612
BssECI CCNNGG 3 cut(s) 149, 342, 792
BssMI GATC 2 cut(s) 338, 772
BssNI GRCGYC 4 cut(s) 48, 98, 188, 266
BssSI CACGAG 2 cut(s) 87, 274
BssT1I CCWWGG 1 cut(s) 342
Bst2BI CACGAG 2 cut(s) 87, 274
Bst6I CTCTTC 3 cut(s) 315, 423, 565
BstACI GRCGYC 4 cut(s) 48, 98, 188, 266
BstBAI YACGTR 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 3 cut(s) 165, 694, 828
BstFNI CGCG 2 cut(s) 35, 151
BstKTI GATC 2 cut(s) 341, 775
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 338, 772
BstMWI GCNNNNNNNGC 4 cut(s) 70, 288, 602, 617
BstNSI RCATGY 1 cut(s) 680
BstUI CGCG 2 cut(s) 35, 151
BstV1I GCAGC 3 cut(s) 57, 267, 340
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 2 cut(s) 32, 134
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 2 cut(s) 50, 735
BtsCI GGATG 3 cut(s) 165, 694, 828
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 30
Cfr42I CCGCGG 1 cut(s) 152
CseI GACGC 3 cut(s) 152, 177, 274
Csp6I GTAC 2 cut(s) 583, 817
CviAII CATG 2 cut(s) 677, 781
CviQI GTAC 2 cut(s) 583, 817
DpnI GATC 2 cut(s) 340, 774
DpnII GATC 2 cut(s) 338, 772
DrdI GACNNNNNNGTC 2 cut(s) 53, 103
DseDI GACNNNNNNGTC 2 cut(s) 53, 103
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 3 cut(s) 315, 423, 565
EarI CTCTTC 3 cut(s) 315, 423, 565
Eco130I CCWWGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 680, 784
FaiI YATR 7 cut(s) 360, 412, 414, 678, 690, 700, 782
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 676, 780
FauNDI CATATG 1 cut(s) 412
FokI GGATG 2 cut(s) 172, 681
FspBI CTAG 4 cut(s) 249, 369, 542, 642
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 32, 134
HgaI GACGC 3 cut(s) 152, 177, 274
Hin1I GRCGYC 4 cut(s) 48, 98, 188, 266
Hin1II CATG 2 cut(s) 680, 784
HinfI GANTC 8 cut(s) 83, 242, 315, 323, 362, 384, 713, 797
Hpy188I TCNGA 2 cut(s) 793, 808
Hpy188III TCNNGA 3 cut(s) 87, 195, 388
HpyAV CCTTC 5 cut(s) 7, 229, 306, 669, 798
HpyCH4IV ACGT 3 cut(s) 48, 98, 172
HpyCH4V TGCA 2 cut(s) 255, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 288, 602, 617
HpySE526I ACGT 3 cut(s) 48, 98, 172
Hsp92I GRCGYC 4 cut(s) 48, 98, 188, 266
Hsp92II CATG 2 cut(s) 680, 784
KspI CCGCGG 1 cut(s) 152
Kzo9I GATC 2 cut(s) 338, 772
LmnI GCTCC 4 cut(s) 213, 279, 502, 593
Lsp1109I GCAGC 3 cut(s) 57, 267, 340
LweI GCATC 3 cut(s) 150, 188, 242
MaeI CTAG 4 cut(s) 249, 369, 542, 642
MaeII ACGT 3 cut(s) 48, 98, 172
MaeIII GTNAC 5 cut(s) 84, 221, 346, 650, 679
MalI GATC 2 cut(s) 340, 774
MbiI CCGCTC 3 cut(s) 92, 271, 282
MboI GATC 2 cut(s) 338, 772
MboII GAAGA 4 cut(s) 332, 415, 440, 552
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 1 cut(s) 338
MluCI AATT 3 cut(s) 571, 707, 754
MlyI GAGTC 4 cut(s) 92, 236, 332, 791
MnlI CCTC 8 cut(s) 21, 62, 196, 202, 384, 424, 648, 787
MseI TTAA 3 cut(s) 423, 498, 527
MspA1I CMGCKG 1 cut(s) 151
MunI CAATTG 1 cut(s) 707
MvnI CGCG 2 cut(s) 35, 151
MwoI GCNNNNNNNGC 4 cut(s) 70, 288, 602, 617
NdeI CATATG 1 cut(s) 412
NdeII GATC 2 cut(s) 338, 772
NlaIII CATG 2 cut(s) 680, 784
NlaIV GGNNCC 2 cut(s) 595, 786
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 3 cut(s) 84, 650, 679
NspI RCATGY 1 cut(s) 680
NspV TTCGAA 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 193
PciI ACATGT 1 cut(s) 676
PcsI WCGNNNNNNNCGW 5 cut(s) 32, 51, 54, 104, 272
PfeI GAWTC 4 cut(s) 315, 362, 384, 713
PflFI GACNNNGTC 2 cut(s) 47, 100
PleI GAGTC 4 cut(s) 91, 236, 331, 791
PpsI GAGTC 4 cut(s) 91, 236, 331, 791
Ppu21I YACGTR 1 cut(s) 173
PscI ACATGT 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 595, 786
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 338
PsyI GACNNNGTC 2 cut(s) 47, 100
RsaI GTAC 2 cut(s) 584, 818
RsaNI GTAC 2 cut(s) 583, 817
SacII CCGCGG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 423, 498, 527
Sau3AI GATC 2 cut(s) 338, 772
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 4 cut(s) 92, 236, 332, 791
SfaNI GCATC 3 cut(s) 150, 188, 242
Sfr274I CTCGAG 1 cut(s) 193
Sfr303I CCGCGG 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 77, 193
SmoI CTYRAG 2 cut(s) 77, 193
Sse9I AATT 3 cut(s) 571, 707, 754
SspMI CTAG 4 cut(s) 249, 369, 542, 642
StyI CCWWGG 1 cut(s) 342
TaiI ACGT 3 cut(s) 51, 101, 175
TaqI TCGA 4 cut(s) 60, 194, 245, 318
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 571, 707, 754
TauI GCSGC 9 cut(s) 35, 76, 95, 185, 188, 271, 285, 288, 291
TfiI GAWTC 4 cut(s) 315, 362, 384, 713
Tru1I TTAA 3 cut(s) 423, 498, 527
Tru9I TTAA 3 cut(s) 423, 498, 527
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 3 cut(s) 84, 650, 679
TseI GCWGC 3 cut(s) 70, 255, 353
Tsp45I GTSAC 3 cut(s) 84, 650, 679
TspDTI ATGAA 3 cut(s) 375, 683, 738
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 2 cut(s) 47, 100
XapI RAATTY 1 cut(s) 571
XceI RCATGY 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 4 cut(s) 249, 369, 542, 642
ZraI GACGTC 2 cut(s) 49, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.