MD15G1131300.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012225
Physical Location & Seq
Reverse (-)
9482058 .. 9485532
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1131300.v1.1.491

Sequence Viewer

Length: 831 bp
ATGGTGGTTCAAGACGATTGGACGAGGGCGGCGATGACCGACGACGTGCTCGTGGTCGAGCTACTGCTGCGGCTCAAGCAGGCGCAGGCGGCGGGACCGTCGTCTTCGCTGCGGTCATCGTCTCCGATGTCGCAGTCTCTTTTGACGCTAAGGTGGGGTGTAAGGATGCCACGCTCCAAAGCGGCGTCGTCCGGTTCCAGATTCGACGGCGGCGTCTTGCACCAGAGGAACAGCGGCAAGAACGGTGCCGATTCCACCACTAGATGCAGCCCCACGACACCGCTTTCATGGAGCGGCGGTACCGGCTCTCCATCCGCCACCGCCGACGGCTTTGAAGAGTCCAGCTGCCCCAGATCCAAGGGTAATGGTACATATGAATCCACCAGCACCACCAATGCCGCCAAGAGGGCAAGGAGAAAGAAGACATATGCTGAGCTTAAAGAGCAGGAAAGTTCGTTGTTGAAGGAAAGGACACATCTGGAAAAGGAAATAGCGACCTTACAAGCAACTTTCAAGGAGCAAAGAGCCAAAAATGTCAACTTTAAGAGAATCAAGATTGATTTGGACTTGCATTCTGCAAGGAATTTGAGTGCAAACTTTGACGGAGCAGGGAAAGCAATTTCCAGCCAACCCCATGAGAGAATAGCTTCTTCTAGTACCACTGCATACTACATTCCTTCGGATTTGCCTCCAAGTCCACACCCGCGATTGGATTCTTGCGTTGAAAGCAATGATGTTCCGGCCCGGGATAATTCCTTCTTGCTGCCTGATTTGAACATGGTGCCGGCGGTCGAAGAATCCGGTTCCGAAATGCTATATGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

29.93

Weight (kDa)

8.94

Isoelectric Point (pI)

62.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 3 cut(s) 245, 299, 781
AccBSI CCGCTC 1 cut(s) 294
AccII CGCG 1 cut(s) 706
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 2 cut(s) 185, 213
AfaI GTAC 3 cut(s) 301, 370, 658
AfiI CCNNNNNNNGG 2 cut(s) 405, 709
AgsI TTSAA 6 cut(s) 11, 335, 463, 514, 725, 775
AjiI CACGTC 1 cut(s) 46
AluBI AGCT 5 cut(s) 61, 345, 436, 647, 828
AluI AGCT 5 cut(s) 61, 345, 436, 647, 828
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 126, 141
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 5 cut(s) 67, 109, 267, 345, 763
ApoI RAATTY 1 cut(s) 583
Asp700I GAANNNNTTC 1 cut(s) 646
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 95, 742
AsuC2I CCSGG 2 cut(s) 745, 746
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 1 cut(s) 95
BanI GGYRCC 3 cut(s) 245, 299, 781
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 96, 428
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 5 cut(s) 54, 96, 279, 332, 750
BccI CCATC 1 cut(s) 319
BceAI ACGGC 2 cut(s) 223, 343
BcnI CCSGG 2 cut(s) 745, 746
BcoDI GTCTC 2 cut(s) 126, 141
BfaI CTAG 2 cut(s) 261, 654
BglI GCCNNNNNGGC 1 cut(s) 407
BlpI GCTNAGC 1 cut(s) 432
Bme1390I CCNGG 2 cut(s) 745, 746
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 744
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 95, 742
BmiI GGNNCC 6 cut(s) 96, 196, 247, 301, 783, 805
BmrFI CCNGG 2 cut(s) 745, 746
BmsI GCATC 2 cut(s) 156, 254
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 2 cut(s) 96, 428
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 745, 746
BsaHI GRCGYC 2 cut(s) 185, 213
BsaJI CCNNGG 2 cut(s) 357, 744
BsaWI WCCGGW 2 cut(s) 191, 800
BsaXI ACNNNNNCTCC 4 cut(s) 283, 292, 313, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 709
Bse118I RCCGGY 2 cut(s) 302, 784
Bse3DI GCAATG 1 cut(s) 736
BseDI CCNNGG 2 cut(s) 357, 744
BseGI GGATG 3 cut(s) 171, 311, 828
BseLI CCNNNNNNNGG 2 cut(s) 405, 709
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 1 cut(s) 423
BseXI GCAGC 5 cut(s) 54, 96, 279, 332, 750
Bsh1236I CGCG 1 cut(s) 706
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 1 cut(s) 743
BshNI GGYRCC 3 cut(s) 245, 299, 781
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 6 cut(s) 192, 303, 740, 745, 785, 801
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 405, 709
BsmAI GTCTC 2 cut(s) 126, 141
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 353
Bsp1720I GCTNAGC 1 cut(s) 432
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 706
BspLI GGNNCC 6 cut(s) 96, 196, 247, 301, 783, 805
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 3 cut(s) 245, 299, 781
BsrBI CCGCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 736
BsrFI RCCGGY 2 cut(s) 302, 784
BssAI RCCGGY 2 cut(s) 302, 784
BssECI CCNNGG 2 cut(s) 357, 744
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 2 cut(s) 185, 213
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 99, 245
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 185, 213
BstC8I GCNNGC 3 cut(s) 81, 87, 786
BstDEI CTNAG 2 cut(s) 149, 432
BstF5I GGATG 3 cut(s) 171, 311, 828
BstFNI CGCG 1 cut(s) 706
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 2 cut(s) 126, 141
BstMBI GATC 1 cut(s) 353
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 8 cut(s) 67, 76, 89, 303, 407, 442, 614, 726
BstPAI GACNNNNGTC 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 743, 744
BstUI CGCG 1 cut(s) 706
BstV1I GCAGC 5 cut(s) 54, 96, 279, 332, 750
BstV2I GAAGAC 2 cut(s) 96, 428
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 743
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 171, 311, 828
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 81, 87, 786
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 302, 784
Cfr13I GGNCC 2 cut(s) 95, 742
Cfr9I CCCGGG 1 cut(s) 744
CseI GACGC 3 cut(s) 154, 174, 202
Csp6I GTAC 3 cut(s) 300, 369, 657
CviAII CATG 3 cut(s) 288, 635, 778
CviQI GTAC 3 cut(s) 300, 369, 657
DdeI CTNAG 2 cut(s) 149, 432
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 3 cut(s) 291, 638, 781
FaqI GGGAC 1 cut(s) 108
FatI CATG 3 cut(s) 287, 634, 777
FauI CCCGC 2 cut(s) 85, 711
FauNDI CATATG 2 cut(s) 373, 427
FokI GGATG 2 cut(s) 178, 298
FspBI CTAG 2 cut(s) 261, 654
GlaI GCGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 743
HapII CCGG 6 cut(s) 192, 303, 740, 745, 785, 801
HgaI GACGC 3 cut(s) 154, 174, 202
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 2 cut(s) 185, 213
Hin1II CATG 3 cut(s) 291, 638, 781
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 7 cut(s) 201, 251, 338, 377, 549, 713, 797
HpaII CCGG 6 cut(s) 192, 303, 740, 745, 785, 801
Hpy166II GTNNAC 2 cut(s) 538, 698
Hpy188I TCNGA 3 cut(s) 126, 682, 808
Hpy188III TCNNGA 4 cut(s) 11, 198, 479, 553
Hpy8I GTNNAC 2 cut(s) 538, 698
Hpy99I CGWCG 6 cut(s) 44, 47, 103, 190, 209, 329
HpyAV CCTTC 3 cut(s) 457, 687, 766
HpyCH4III ACNGT 2 cut(s) 99, 245
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 6 cut(s) 220, 267, 571, 578, 593, 665
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 76, 89, 303, 407, 442, 614, 726
HpyF3I CTNAG 2 cut(s) 149, 432
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 185, 213
Hsp92II CATG 3 cut(s) 291, 638, 781
HspAI GCGC 1 cut(s) 83
KpnI GGTACC 1 cut(s) 303
KroI GCCGGC 1 cut(s) 784
KroNI GCCGGC 1 cut(s) 786
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 4 cut(s) 179, 291, 517, 605
Lsp1109I GCAGC 5 cut(s) 54, 96, 279, 332, 750
LweI GCATC 2 cut(s) 156, 254
MaeI CTAG 2 cut(s) 261, 654
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 355
MbiI CCGCTC 1 cut(s) 294
MboI GATC 1 cut(s) 353
MboII GAAGA 5 cut(s) 96, 347, 433, 642, 806
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 583, 618, 751
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 4 cut(s) 18, 219, 399, 699
MroNI GCCGGC 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 646
MseI TTAA 2 cut(s) 438, 543
MspA1I CMGCKG 2 cut(s) 234, 345
MspI CCGG 6 cut(s) 192, 303, 740, 745, 785, 801
MspR9I CCNGG 2 cut(s) 745, 746
Mva1269I GAATGC 1 cut(s) 571
MvnI CGCG 1 cut(s) 706
MwoI GCNNNNNNNGC 8 cut(s) 67, 76, 89, 303, 407, 442, 614, 726
NaeI GCCGGC 1 cut(s) 786
NciI CCSGG 2 cut(s) 745, 746
NdeI CATATG 2 cut(s) 373, 427
NdeII GATC 1 cut(s) 353
NgoMIV GCCGGC 1 cut(s) 784
NlaIII CATG 3 cut(s) 291, 638, 781
NlaIV GGNNCC 6 cut(s) 96, 196, 247, 301, 783, 805
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 48, 210
PctI GAATGC 1 cut(s) 571
PdiI GCCGGC 1 cut(s) 786
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 6 cut(s) 201, 251, 377, 549, 713, 797
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 100
PspN4I GGNNCC 6 cut(s) 96, 196, 247, 301, 783, 805
PspPI GGNCC 2 cut(s) 95, 742
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 345
RsaI GTAC 3 cut(s) 301, 370, 658
RsaNI GTAC 3 cut(s) 300, 369, 657
SaqAI TTAA 2 cut(s) 438, 543
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 2 cut(s) 95, 742
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 745, 746
SduI GDGCHC 1 cut(s) 51
SetI ASST 8 cut(s) 48, 63, 155, 347, 438, 500, 649, 830
SfaNI GCATC 2 cut(s) 156, 254
SinI GGWCC 1 cut(s) 95
SmaI CCCGGG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 583, 618, 751
SspMI CTAG 2 cut(s) 261, 654
StyD4I CCNGG 2 cut(s) 743, 744
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 99, 245
TaiI ACGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 57, 204, 792
TaqII GACCGA 1 cut(s) 53
TasI AATT 3 cut(s) 583, 618, 751
TauI GCSGC 8 cut(s) 32, 73, 92, 185, 213, 237, 297, 401
TfiI GAWTC 6 cut(s) 201, 251, 377, 549, 713, 797
Tru1I TTAA 2 cut(s) 438, 543
Tru9I TTAA 2 cut(s) 438, 543
TscAI CASTG 1 cut(s) 667
TseI GCWGC 5 cut(s) 67, 109, 267, 345, 763
TspDTI ATGAA 2 cut(s) 276, 390
TspGWI ACGGA 1 cut(s) 618
TspMI CCCGGG 1 cut(s) 744
TspRI CASTG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 583
XmaI CCCGGG 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 2 cut(s) 261, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.