Rroxscaffold_7G00170810

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012225
Physical Location & Seq
Reverse (-)
11157823 .. 11161718
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170810.1

Sequence Viewer

Length: 852 bp
ATGATGGTGGCGAAGGACGAGTGGACGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCGTCCTCGTCGTCTTCGCTTCTCCACTATCCCTTCACGGCCAAGTCCGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGTCGGCGTCGGCGTCGGCGGCGTCTTCCTCGAGATGCGACGCCGTTTGCCGGAGGAACAACAGTAAGAAGGACGACTCGACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAATCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGACTACTTTTAAAGAGCAAAGAGCCAAAAATGAGAACTTAAAGAGAGTGAAGCTTGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCAGAGAATAGCACCTCCTAGTTTCGGACACTTTCCTTCACATTTGCTTTCACATGCCACACCGTATGTTCATCCGTATCCACAACTGGATTCCAGCGATGAACACAAGGCTGCTTCGTCATCCGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTCGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.01

Weight (kDa)

8.86

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 802
AccBSI CCGCTC 3 cut(s) 92, 300, 614
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
AfaI GTAC 2 cut(s) 367, 602
AfiI CCNNNNNNNGG 3 cut(s) 158, 234, 665
AgsI TTSAA 2 cut(s) 466, 568
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 4 cut(s) 64, 439, 559, 849
AluI AGCT 4 cut(s) 64, 439, 559, 849
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 6 cut(s) 70, 169, 177, 273, 752, 784
ApoI RAATTY 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 766
AsuII TTCGAA 1 cut(s) 336
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 474
BanI GGYRCC 1 cut(s) 802
BbsI GAAGAC 2 cut(s) 102, 201
BbvI GCAGC 6 cut(s) 57, 156, 189, 285, 739, 771
BccI CCATC 3 cut(s) 323, 602, 648
BceAI ACGGC 2 cut(s) 150, 212
BciT130I CCWGG 1 cut(s) 295
BciVI GTATCC 1 cut(s) 729
BcnI CCSGG 1 cut(s) 766
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 267, 387, 660
BfuI GTATCC 1 cut(s) 729
Bme1390I CCNGG 2 cut(s) 295, 766
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 2 cut(s) 295, 766
BmsI GCATC 2 cut(s) 209, 260
BpiI GAAGAC 2 cut(s) 102, 201
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 766
BsaHI GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 234, 665
Bse1I ACTGG 2 cut(s) 630, 732
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 152, 360
BseGI GGATG 3 cut(s) 712, 761, 849
BseLI CCNNNNNNNGG 3 cut(s) 158, 234, 665
BseNI ACTGG 2 cut(s) 630, 732
BseRI GAGGAG 1 cut(s) 827
BseXI GCAGC 6 cut(s) 57, 156, 189, 285, 739, 771
Bsh1236I CGCG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 4 cut(s) 166, 235, 318, 765
BslI CCNNNNNNNGG 3 cut(s) 158, 234, 665
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 336
Bsp143I GATC 2 cut(s) 356, 790
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 2 cut(s) 88, 154
BspLI GGNNCC 1 cut(s) 804
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 802
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 3 cut(s) 92, 300, 614
BsrI ACTGG 2 cut(s) 630, 732
BssECI CCNNGG 2 cut(s) 152, 360
BssMI GATC 2 cut(s) 356, 790
BssNI GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 248, 705
Bst6I CTCTTC 2 cut(s) 333, 441
BstACI GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 90, 311
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 712, 761, 849
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 2 cut(s) 359, 793
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 356, 790
BstMWI GCNNNNNNNGC 4 cut(s) 70, 203, 306, 620
BstNI CCWGG 1 cut(s) 295
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 293, 764
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 6 cut(s) 57, 156, 189, 285, 739, 771
BstV2I GAAGAC 2 cut(s) 102, 201
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 50, 753
BtsCI GGATG 3 cut(s) 712, 761, 849
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 311
Cfr13I GGNCC 1 cut(s) 474
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 6 cut(s) 84, 174, 180, 186, 195, 233
Csp6I GTAC 2 cut(s) 366, 601
CviAII CATG 2 cut(s) 695, 799
CviQI GTAC 2 cut(s) 366, 601
DpnI GATC 2 cut(s) 358, 792
DpnII GATC 2 cut(s) 356, 790
DraI TTTAAA 1 cut(s) 517
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 333, 441
EarI CTCTTC 2 cut(s) 333, 441
Eco130I CCWWGG 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 474
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 2 cut(s) 698, 802
FaiI YATR 8 cut(s) 376, 378, 430, 432, 696, 708, 800, 838
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FatI CATG 2 cut(s) 694, 798
FauNDI CATATG 2 cut(s) 376, 430
FokI GGATG 2 cut(s) 699, 748
FspBI CTAG 3 cut(s) 267, 387, 660
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 137
HapII CCGG 4 cut(s) 166, 235, 318, 765
HgaI GACGC 6 cut(s) 84, 174, 180, 186, 195, 233
Hin1I GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
Hin1II CATG 2 cut(s) 698, 802
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 9 cut(s) 83, 148, 260, 333, 341, 380, 402, 731, 818
HpaII CCGG 4 cut(s) 166, 235, 318, 765
Hpy166II GTNNAC 2 cut(s) 24, 635
Hpy188I TCNGA 4 cut(s) 645, 668, 795, 829
Hpy188III TCNNGA 3 cut(s) 87, 216, 406
Hpy8I GTNNAC 2 cut(s) 24, 635
HpyAV CCTTC 6 cut(s) 7, 73, 139, 247, 324, 687
HpyCH4III ACNGT 2 cut(s) 248, 705
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 273, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 203, 306, 620
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 7 cut(s) 48, 95, 185, 191, 197, 206, 225
Hsp92II CATG 2 cut(s) 698, 802
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 356, 790
LmnI GCTCC 2 cut(s) 297, 611
Lsp1109I GCAGC 6 cut(s) 57, 156, 189, 285, 739, 771
LweI GCATC 2 cut(s) 209, 260
MaeI CTAG 3 cut(s) 267, 387, 660
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 358, 792
MbiI CCGCTC 3 cut(s) 92, 300, 614
MboI GATC 2 cut(s) 356, 790
MboII GAAGA 7 cut(s) 102, 201, 350, 430, 433, 458, 570
MflI RGATCY 1 cut(s) 356
MluCI AATT 3 cut(s) 478, 589, 772
MlyI GAGTC 4 cut(s) 92, 254, 350, 812
MnlI CCTC 9 cut(s) 62, 112, 223, 231, 402, 442, 666, 805, 808
MseI TTAA 3 cut(s) 441, 516, 545
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 4 cut(s) 166, 235, 318, 765
MspR9I CCNGG 2 cut(s) 295, 766
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 2 cut(s) 88, 154
MwoI GCNNNNNNNGC 4 cut(s) 70, 203, 306, 620
NciI CCSGG 1 cut(s) 766
NdeI CATATG 2 cut(s) 376, 430
NdeII GATC 2 cut(s) 356, 790
NlaIII CATG 2 cut(s) 698, 802
NlaIV GGNNCC 1 cut(s) 804
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 698
NspV TTCGAA 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 214
PcsI WCGNNNNNNNCGW 6 cut(s) 32, 51, 54, 92, 104, 194
PctI GAATGC 1 cut(s) 574
PfeI GAWTC 5 cut(s) 148, 333, 380, 402, 731
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 2 cut(s) 293, 764
PleI GAGTC 4 cut(s) 91, 254, 349, 812
PpsI GAGTC 4 cut(s) 91, 254, 349, 812
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 1 cut(s) 474
PsuI RGATCY 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 367, 602
RsaNI GTAC 2 cut(s) 366, 601
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 441, 516, 545
Sau3AI GATC 2 cut(s) 356, 790
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 4 cut(s) 92, 254, 350, 812
ScrFI CCNGG 2 cut(s) 295, 766
SetI ASST 6 cut(s) 51, 66, 441, 561, 658, 851
SfaNI GCATC 2 cut(s) 209, 260
Sfr274I CTCGAG 1 cut(s) 214
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 3 cut(s) 478, 589, 772
SspMI CTAG 3 cut(s) 267, 387, 660
StyD4I CCNGG 2 cut(s) 293, 764
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 248, 705
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 60, 215, 263, 336, 810
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 478, 589, 772
TauI GCSGC 9 cut(s) 35, 76, 95, 206, 289, 303, 306, 309, 351
TfiI GAWTC 5 cut(s) 148, 333, 380, 402, 731
Tru1I TTAA 3 cut(s) 441, 516, 545
Tru9I TTAA 3 cut(s) 441, 516, 545
TscAI CASTG 1 cut(s) 328
TseI GCWGC 6 cut(s) 70, 169, 177, 273, 752, 784
TspDTI ATGAA 3 cut(s) 393, 701, 756
TspGWI ACGGA 2 cut(s) 133, 705
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 214
XspI CTAG 3 cut(s) 267, 387, 660
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.