Rorug06G0269600

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012225
Physical Location & Seq
Forward (+)
41667041 .. 41668909
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0269600.1

Sequence Viewer

Length: 990 bp
ATGGCGGCAAAACTTATGCATGCGGTTCAGTACGACGCTTATGGTGGAGGACCTTCCGGTCTAAAGCATGTTGAGGTTCCGATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAATTGGAAGCGGCTACCATAAATCCAATTGATTGGAAAGTTCAGAAAGGCCTACTGCGCCCTTTTTTACCAAGAAAGTTCCCTTATATACCTGTTAGTGATGTGGCTGGAGAGGTTGTCGACGTTGGACAAGGAGTTCAGAAGTTCAAAGCGGGCGACAAAGTTGTAGCATTTTTCACCCAGGCTAATGGAGGTGGATTTGCTGAGTTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCTGAAGTTTCAGCAGCCGAAGGTGCAGGGTTACCTATTGCTGGTCTCACAGCTCACCAGTGTCTCACCCAAGCTGCAGGAGTCAAGCTTGATGGCACTGGCCCACAGAAGAACATATTGGTTACTGCTGCCTCAGGCGGTGTAGGTCACTATGCAGTTCAATTGGCAAAGCTTGGGAACACTCACGTGACAGCCACTTGTGGTGCACGCAACATTGAATTTGTCAGGAGCTTAGGGGCCGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAGTACGATGCTGTTATCCACTGTGCAACTGGCATTCCTTGGTCCACATTTGAGCCGAATTTGAGTCCAAATGGGAAGGTTATAGACATTACTCCCAGTCCAAGTGCATTCCTTACTTTCGCTCTGAAGAAACTCACCTTCTCCAAAAAGCAACTGGTGCCGCTGTTCGTGAATGCCAAGGCAGAGAATCTGGATTGTCTTGTGAAGTTGGTGAAGGAAGGAAAGCTCAAGACAGTGATCGACTCAAAGTATCCTCTGAGCAAGGCTGAAGAAGCTTGGGCTAAGAGTATTGATGGCCATGCTACTGGGAAGATCATTGTGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

34.72

Weight (kDa)

8.84

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 118 4.1e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 291 3.9e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 3.7e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 234
AciI CCGC 7 cut(s) 5, 23, 125, 266, 359, 498, 821
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 2 cut(s) 578, 718
AcuI CTGAAG 4 cut(s) 384, 648, 806, 948
AcvI CACGTG 1 cut(s) 547
AfaI GTAC 2 cut(s) 32, 665
AfiI CCNNNNNNNGG 3 cut(s) 401, 630, 631
AgsI TTSAA 3 cut(s) 262, 521, 578
AjnI CCWGG 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AleI CACNNNNGTG 1 cut(s) 545
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 8 cut(s) 413, 434, 448, 532, 591, 638, 886, 935
AluI AGCT 8 cut(s) 413, 434, 448, 532, 591, 638, 886, 935
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 410, 428
Alw44I GTGCAC 1 cut(s) 564
AlwI GGATC 1 cut(s) 76
AoxI GGCC 5 cut(s) 163, 356, 460, 597, 955
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 374, 434, 488, 635
ApoI RAATTY 2 cut(s) 578, 718
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 4 cut(s) 50, 461, 597, 702
AsuHPI GGTGA 5 cut(s) 283, 407, 418, 787, 883
AvaII GGWCC 2 cut(s) 50, 702
AxyI CCTNAGG 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 957
BanI GGYRCC 1 cut(s) 817
BbrPI CACGTG 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 4 cut(s) 386, 421, 475, 647
BccI CCATC 2 cut(s) 446, 947
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 410, 428
BfaI CTAG 2 cut(s) 333, 354
BfmI CTRYAG 1 cut(s) 435
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 8 cut(s) 6, 126, 359, 375, 435, 489, 636, 821
BlsI GCNGC 8 cut(s) 7, 127, 360, 376, 436, 490, 637, 822
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 2 cut(s) 50, 702
BmgT120I GGNCC 4 cut(s) 50, 461, 597, 702
BmiI GGNNCC 4 cut(s) 78, 598, 819, 984
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 2 cut(s) 750, 975
BmsI GCATC 1 cut(s) 658
BmuI ACTGGG 2 cut(s) 750, 975
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 294, 698, 837
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 630, 631
Bse1I ACTGG 6 cut(s) 418, 463, 694, 756, 819, 970
Bse21I CCTNAGG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 294, 698, 837
BseLI CCNNNNNNNGG 3 cut(s) 401, 630, 631
BseMII CTCAG 3 cut(s) 309, 507, 908
BseNI ACTGG 6 cut(s) 418, 463, 694, 756, 819, 970
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 386, 421, 475, 647
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 5 cut(s) 165, 358, 462, 599, 957
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 401, 630, 631
BsmAI GTCTC 2 cut(s) 410, 428
BsmI GAATGC 3 cut(s) 693, 767, 838
BsnI GGCC 5 cut(s) 165, 358, 462, 599, 957
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 3 cut(s) 81, 897, 972
BspACI CCGC 7 cut(s) 5, 23, 125, 266, 359, 498, 821
BspANI GGCC 5 cut(s) 165, 358, 462, 599, 957
BspCNI CTCAG 3 cut(s) 310, 506, 909
BspLI GGNNCC 4 cut(s) 78, 598, 819, 984
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 817
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 6 cut(s) 418, 463, 694, 756, 819, 970
BssECI CCNNGG 3 cut(s) 294, 698, 837
BssMI GATC 3 cut(s) 81, 897, 972
BssT1I CCWWGG 2 cut(s) 698, 837
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 349, 683, 895
BstAPI GCANNNNNTGC 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 3 cut(s) 21, 268, 568
BstDEI CTNAG 5 cut(s) 318, 493, 592, 917, 942
BstEII GGTNACC 1 cut(s) 390
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 84, 900, 975
BstMAI GTCTC 2 cut(s) 410, 428
BstMBI GATC 3 cut(s) 81, 897, 972
BstMWI GCNNNNNNNGC 5 cut(s) 171, 323, 383, 817, 932
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 2 cut(s) 23, 71
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 386, 421, 475, 647
BstXI CCANNNNNNTGG 3 cut(s) 147, 302, 965
Bsu36I CCTNAGG 1 cut(s) 493
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 5 cut(s) 165, 358, 462, 599, 957
BtsIMutI CAGTG 4 cut(s) 425, 456, 679, 900
Cac8I GCNNGC 3 cut(s) 21, 268, 568
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 4 cut(s) 50, 461, 597, 702
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 31, 664
CviAII CATG 3 cut(s) 20, 68, 959
CviQI GTAC 2 cut(s) 31, 664
DdeI CTNAG 5 cut(s) 318, 493, 592, 917, 942
DpnI GATC 3 cut(s) 83, 899, 974
DpnII GATC 3 cut(s) 81, 897, 972
DrdI GACNNNNNNGTC 1 cut(s) 57
DseDI GACNNNNNNGTC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 955
Eco130I CCWWGG 2 cut(s) 698, 837
Eco147I AGGCCT 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 50, 702
Eco57I CTGAAG 4 cut(s) 384, 648, 806, 948
Eco72I CACGTG 1 cut(s) 547
Eco81I CCTNAGG 1 cut(s) 493
Eco91I GGTNACC 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 698, 837
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 698, 837
FaeI CATG 3 cut(s) 23, 71, 962
FatI CATG 3 cut(s) 19, 67, 958
FauI CCCGC 1 cut(s) 259
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 6, 126, 359, 375, 435, 489, 636, 821
Fsp4HI GCNGC 8 cut(s) 6, 126, 359, 375, 435, 489, 636, 821
FspBI CTAG 2 cut(s) 333, 354
GlaI GCGC 1 cut(s) 173
GluI GCNGC 8 cut(s) 6, 126, 359, 375, 435, 489, 636, 821
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 5 cut(s) 165, 358, 462, 599, 957
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 174
Hin1II CATG 3 cut(s) 23, 71, 962
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 3 cut(s) 446, 530, 933
HinfI GANTC 4 cut(s) 441, 724, 847, 902
HpaII CCGG 1 cut(s) 57
HphI GGTGA 5 cut(s) 283, 407, 418, 787, 883
Hpy166II GTNNAC 3 cut(s) 235, 566, 705
Hpy188I TCNGA 8 cut(s) 81, 93, 159, 255, 642, 660, 786, 918
Hpy188III TCNNGA 5 cut(s) 586, 611, 829, 851, 889
Hpy8I GTNNAC 3 cut(s) 235, 566, 705
Hpy99I CGWCG 2 cut(s) 38, 239
HpyAV CCTTC 8 cut(s) 63, 374, 623, 660, 730, 808, 868, 872
HpyCH4III ACNGT 3 cut(s) 349, 683, 895
HpyCH4IV ACGT 2 cut(s) 237, 546
HpyCH4V TGCA 8 cut(s) 19, 326, 386, 437, 515, 566, 686, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 171, 323, 383, 817, 932
HpyF3I CTNAG 5 cut(s) 318, 493, 592, 917, 942
HpySE526I ACGT 2 cut(s) 237, 546
Hsp92II CATG 3 cut(s) 23, 71, 962
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 81, 897, 972
LmnI GCTCC 2 cut(s) 588, 982
Lsp1109I GCAGC 4 cut(s) 386, 421, 475, 647
LweI GCATC 1 cut(s) 658
MaeI CTAG 2 cut(s) 333, 354
MaeII ACGT 2 cut(s) 237, 546
MaeIII GTNAC 5 cut(s) 349, 390, 481, 506, 547
MalI GATC 3 cut(s) 83, 899, 974
MboI GATC 3 cut(s) 81, 897, 972
MboII GAAGA 5 cut(s) 106, 481, 799, 941, 982
MfeI CAATTG 2 cut(s) 141, 521
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 5 cut(s) 116, 141, 521, 578, 718
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 3 cut(s) 450, 733, 896
MmeI TCCRAC 2 cut(s) 220, 638
MnlI CCTC 8 cut(s) 41, 67, 97, 220, 299, 502, 598, 924
Mox20I TGGCCA 1 cut(s) 957
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 1 cut(s) 957
MseI TTAA 1 cut(s) 988
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 957
MspA1I CMGCKG 1 cut(s) 823
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 2 cut(s) 141, 521
Mva1269I GAATGC 3 cut(s) 693, 767, 838
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 5 cut(s) 171, 323, 383, 817, 932
NdeII GATC 3 cut(s) 81, 897, 972
NlaIII CATG 3 cut(s) 23, 71, 962
NlaIV GGNNCC 4 cut(s) 78, 598, 819, 984
NmuCI GTSAC 2 cut(s) 506, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
OliI CACNNNNGTG 1 cut(s) 545
PaeI GCATGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 3 cut(s) 693, 767, 838
PfeI GAWTC 1 cut(s) 847
PkrI GCNGC 8 cut(s) 7, 127, 360, 376, 436, 490, 637, 822
PleI GAGTC 3 cut(s) 449, 732, 896
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 3 cut(s) 449, 732, 896
Ppu21I YACGTR 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 294
PspCI CACGTG 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 4 cut(s) 78, 598, 819, 984
PspPI GGNCC 4 cut(s) 50, 461, 597, 702
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 439
RsaI GTAC 2 cut(s) 32, 665
RsaNI GTAC 2 cut(s) 31, 664
RseI CAYNNNNRTG 1 cut(s) 545
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 988
SatI GCNGC 8 cut(s) 6, 126, 359, 375, 435, 489, 636, 821
Sau3AI GATC 3 cut(s) 81, 897, 972
Sau96I GGNCC 4 cut(s) 50, 461, 597, 702
SchI GAGTC 3 cut(s) 450, 733, 896
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 658
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 2 cut(s) 50, 702
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 1 cut(s) 23
Sse9I AATT 5 cut(s) 116, 141, 521, 578, 718
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 7 cut(s) 5, 23, 125, 266, 359, 498, 821
SspMI CTAG 2 cut(s) 333, 354
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 698, 837
TaaI ACNGT 3 cut(s) 349, 683, 895
TaiI ACGT 2 cut(s) 240, 549
TaqI TCGA 2 cut(s) 234, 900
TasI AATT 5 cut(s) 116, 141, 521, 578, 718
TauI GCSGC 4 cut(s) 8, 128, 361, 823
TfiI GAWTC 1 cut(s) 847
Tru1I TTAA 1 cut(s) 988
Tru9I TTAA 1 cut(s) 988
TscAI CASTG 4 cut(s) 425, 463, 686, 900
TseFI GTSAC 2 cut(s) 506, 547
TseI GCWGC 4 cut(s) 374, 434, 488, 635
Tsp45I GTSAC 2 cut(s) 506, 547
TspRI CASTG 4 cut(s) 425, 463, 686, 900
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 50, 702
XapI RAATTY 2 cut(s) 578, 718
XceI RCATGY 2 cut(s) 23, 71
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 811
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 2 cut(s) 333, 354
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.