RchiOBHm_Chr6g0297181

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012225
Physical Location & Seq
Forward (+)
58947326 .. 58950942
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26672

Sequence Viewer

Length: 855 bp
ATGCTGGTGGCGAAGGACGAGTGGACGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCATCCTCGTCGTCTCCGCTTCTCCACTATCCCTTCACGGCCAAGTCCGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGTCGGGGTCGGCGGCGTCTTCCTCGAGATGCGACGCCGTTTGCCGGAGGAACAACAGTAAGAAGGACGACTCGACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAATCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACTAATTTGAGAAAGGAAATAGCGACATTACAGGCTACTTTTAAAGAGCAAAGAGCCAAAAATGAGCACTTAAAGAGAGCGAAGCTCGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCAGAGAATAGCACCTCCTAGTTTCGGACACTTTCCTTCACATTTGCTTTCACATGCCACACCGTATGTTAATCCGTATCCTCAACTGGATTCCAGCGATGAACACAAGGCTGCTTCGTCATCTGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTTGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

30.97

Weight (kDa)

8.86

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 805
AccBSI CCGCTC 3 cut(s) 92, 294, 617
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 5 cut(s) 48, 95, 185, 200, 219
AfaI GTAC 2 cut(s) 370, 605
AfiI CCNNNNNNNGG 3 cut(s) 158, 228, 668
AgsI TTSAA 2 cut(s) 469, 571
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 64, 442, 562, 852
AluI AGCT 4 cut(s) 64, 442, 562, 852
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 2 cut(s) 114, 167
AlwI GGATC 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 7 cut(s) 70, 169, 177, 267, 300, 755, 787
ApoI RAATTY 1 cut(s) 592
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 208
BanI GGYRCC 1 cut(s) 805
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 7 cut(s) 57, 156, 189, 279, 312, 742, 774
BccI CCATC 3 cut(s) 326, 605, 651
BceAI ACGGC 2 cut(s) 150, 206
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 114, 167
BfaI CTAG 3 cut(s) 261, 390, 663
BfuI GTATCC 1 cut(s) 732
Bme1390I CCNGG 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 807
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 203, 254
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 4 cut(s) 546, 578, 806, 838
BpmI CTGGAG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 339
BsaHI GRCGYC 5 cut(s) 48, 95, 185, 200, 219
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 228, 668
Bse1I ACTGG 2 cut(s) 633, 735
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 152, 363
BseGI GGATG 2 cut(s) 98, 852
BseLI CCNNNNNNNGG 3 cut(s) 158, 228, 668
BseNI ACTGG 2 cut(s) 633, 735
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 7 cut(s) 57, 156, 189, 279, 312, 742, 774
Bsh1236I CGCG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 3 cut(s) 166, 229, 321
BslI CCNNNNNNNGG 3 cut(s) 158, 228, 668
BsmAI GTCTC 2 cut(s) 114, 167
BsmBI CGTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 2 cut(s) 359, 793
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 2 cut(s) 88, 154
BspLI GGNNCC 1 cut(s) 807
BspPI GGATC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 3 cut(s) 92, 294, 617
BsrI ACTGG 2 cut(s) 633, 735
BssECI CCNNGG 2 cut(s) 152, 363
BssMI GATC 2 cut(s) 359, 793
BssNI GRCGYC 5 cut(s) 48, 95, 185, 200, 219
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 242, 708
Bst6I CTCTTC 2 cut(s) 336, 444
BstACI GRCGYC 5 cut(s) 48, 95, 185, 200, 219
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 90, 314
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 98, 852
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 2 cut(s) 362, 796
BstMAI GTCTC 2 cut(s) 114, 167
BstMBI GATC 2 cut(s) 359, 793
BstMWI GCNNNNNNNGC 6 cut(s) 70, 300, 303, 306, 309, 623
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 287
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 7 cut(s) 57, 156, 189, 279, 312, 742, 774
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 50, 756
BtsCI GGATG 2 cut(s) 98, 852
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 314
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 4 cut(s) 84, 174, 189, 227
Csp6I GTAC 2 cut(s) 369, 604
CviAII CATG 2 cut(s) 698, 802
CviQI GTAC 2 cut(s) 369, 604
DpnI GATC 2 cut(s) 361, 795
DpnII GATC 2 cut(s) 359, 793
DraI TTTAAA 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 336, 444
EarI CTCTTC 2 cut(s) 336, 444
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 2 cut(s) 701, 805
FaiI YATR 8 cut(s) 379, 381, 433, 435, 699, 711, 803, 841
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FatI CATG 2 cut(s) 697, 801
FauNDI CATATG 2 cut(s) 379, 433
FokI GGATG 1 cut(s) 85
FspBI CTAG 3 cut(s) 261, 390, 663
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 166, 229, 321
HgaI GACGC 4 cut(s) 84, 174, 189, 227
Hin1I GRCGYC 5 cut(s) 48, 95, 185, 200, 219
Hin1II CATG 2 cut(s) 701, 805
HincII GTYRAC 1 cut(s) 638
HindII GTYRAC 1 cut(s) 638
HinfI GANTC 9 cut(s) 83, 148, 254, 336, 344, 383, 405, 734, 821
HpaII CCGG 3 cut(s) 166, 229, 321
Hpy166II GTNNAC 2 cut(s) 24, 638
Hpy188I TCNGA 4 cut(s) 648, 671, 798, 832
Hpy188III TCNNGA 3 cut(s) 87, 210, 409
Hpy8I GTNNAC 2 cut(s) 24, 638
Hpy99I CGWCG 7 cut(s) 47, 50, 59, 62, 109, 190, 221
HpyAV CCTTC 6 cut(s) 7, 73, 139, 241, 327, 690
HpyCH4III ACNGT 2 cut(s) 242, 708
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 267, 577
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 300, 303, 306, 309, 623
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 5 cut(s) 48, 95, 185, 200, 219
Hsp92II CATG 2 cut(s) 701, 805
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 359, 793
LmnI GCTCC 2 cut(s) 291, 614
Lsp1109I GCAGC 7 cut(s) 57, 156, 189, 279, 312, 742, 774
LweI GCATC 2 cut(s) 203, 254
MaeI CTAG 3 cut(s) 261, 390, 663
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 361, 795
MbiI CCGCTC 3 cut(s) 92, 294, 617
MboI GATC 2 cut(s) 359, 793
MboII GAAGA 6 cut(s) 195, 353, 433, 436, 461, 573
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 481, 592, 775
MlyI GAGTC 4 cut(s) 92, 248, 353, 815
MseI TTAA 4 cut(s) 444, 519, 548, 714
MspA1I CMGCKG 2 cut(s) 154, 303
MspI CCGG 3 cut(s) 166, 229, 321
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 2 cut(s) 88, 154
MwoI GCNNNNNNNGC 6 cut(s) 70, 300, 303, 306, 309, 623
NdeI CATATG 2 cut(s) 379, 433
NdeII GATC 2 cut(s) 359, 793
NlaIII CATG 2 cut(s) 701, 805
NlaIV GGNNCC 1 cut(s) 807
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 701
NspV TTCGAA 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 208
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 51, 54, 92
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 5 cut(s) 148, 336, 383, 405, 734
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 287
PleI GAGTC 4 cut(s) 91, 248, 352, 815
PpsI GAGTC 4 cut(s) 91, 248, 352, 815
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 807
PsuI RGATCY 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 370, 605
RsaNI GTAC 2 cut(s) 369, 604
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 4 cut(s) 444, 519, 548, 714
Sau3AI GATC 2 cut(s) 359, 793
SchI GAGTC 4 cut(s) 92, 248, 353, 815
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 546
SetI ASST 6 cut(s) 51, 66, 444, 564, 661, 854
SfaNI GCATC 2 cut(s) 203, 254
Sfr274I CTCGAG 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 481, 592, 775
SspMI CTAG 3 cut(s) 261, 390, 663
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 242, 708
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 60, 209, 257, 339, 564
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 481, 592, 775
TfiI GAWTC 5 cut(s) 148, 336, 383, 405, 734
Tru1I TTAA 4 cut(s) 444, 519, 548, 714
Tru9I TTAA 4 cut(s) 444, 519, 548, 714
TscAI CASTG 1 cut(s) 331
TseI GCWGC 7 cut(s) 70, 169, 177, 267, 300, 755, 787
TspDTI ATGAA 2 cut(s) 396, 759
TspGWI ACGGA 2 cut(s) 133, 708
TspRI CASTG 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 47
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 3 cut(s) 261, 390, 663
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.