Rh6AG380700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012225
Physical Location & Seq
Forward (+)
58018779 .. 58022879
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG380700.1

Sequence Viewer

Length: 606 bp
ATGTTTGTTGATTTTAGGTCTCTGCATGTTTGTGTATTAACCTACAAGATATGTACACTGCGTTATATTTTGTTCTTTGTAAGTGTATTTGCTGAAGTTGTGGCTTTGATATTTCAGGGTACTGCTACATATGAATCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGGCTACTTTTAAAGAGCAAAGAGCCAAAAATGAGCACTTAAAGAGAGCGAAGCTTGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCCGAGAATAGCACCTCCTAGTTTCAGACACTTTCCTTCACATTTACTTTCACATGCCACACCGTATGTTAATCCGTATCCCCAACTGGATTCCTGCGATGAACACAAGGCTGCTTCATCATCCGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTCGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.74

Weight (kDa)

7.09

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 368
AciI CCGC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 3 cut(s) 55, 121, 356
AgsI TTSAA 2 cut(s) 220, 322
AluBI AGCT 3 cut(s) 193, 313, 603
AluI AGCT 3 cut(s) 193, 313, 603
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 506, 538
ApoI RAATTY 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 520
AvaII GGWCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 493, 525
BccI CCATC 2 cut(s) 356, 402
BciVI GTATCC 1 cut(s) 483
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 141, 414
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 2 cut(s) 507, 539
BlsI GCNGC 2 cut(s) 508, 540
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 1 cut(s) 520
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpuMI CCSGG 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 384, 486
BseGI GGATG 3 cut(s) 394, 515, 603
BseNI ACTGG 2 cut(s) 384, 486
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 493, 525
BshNI GGYRCC 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 328
Bso31I GGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 544
BspACI CCGC 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 556
BspTNI GGTCTC 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 2 cut(s) 384, 486
BssMI GATC 1 cut(s) 544
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 53
BstF5I GGATG 3 cut(s) 394, 515, 603
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 2 cut(s) 29, 452
BstSCI CCNGG 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 493, 525
BsuI GTATCC 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 3 cut(s) 394, 515, 603
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 228
Csp6I GTAC 3 cut(s) 54, 120, 355
CviAII CATG 3 cut(s) 26, 449, 553
CviJI RGCY 7 cut(s) 104, 193, 263, 284, 313, 506, 603
CviKI_1 RGCY 7 cut(s) 104, 193, 263, 284, 313, 506, 603
CviQI GTAC 3 cut(s) 54, 120, 355
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 3 cut(s) 29, 452, 556
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 3 cut(s) 25, 448, 552
FauNDI CATATG 2 cut(s) 130, 184
Fnu4HI GCNGC 2 cut(s) 507, 539
FokI GGATG 2 cut(s) 381, 502
Fsp4HI GCNGC 2 cut(s) 507, 539
FspBI CTAG 2 cut(s) 141, 414
GluI GCNGC 2 cut(s) 507, 539
HapII CCGG 1 cut(s) 519
Hin1II CATG 3 cut(s) 29, 452, 556
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 134, 156, 485, 572
HpaII CCGG 1 cut(s) 519
Hpy166II GTNNAC 2 cut(s) 56, 389
Hpy188I TCNGA 4 cut(s) 399, 422, 549, 583
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 2 cut(s) 56, 389
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4V TGCA 2 cut(s) 25, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
Hsp92II CATG 3 cut(s) 29, 452, 556
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 101, 245, 397, 467, 502, 532, 555, 561
Lsp1109I GCAGC 2 cut(s) 493, 525
MaeI CTAG 2 cut(s) 141, 414
MalI GATC 1 cut(s) 546
MbiI CCGCTC 1 cut(s) 368
MboI GATC 1 cut(s) 544
MboII GAAGA 4 cut(s) 184, 187, 212, 324
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 3 cut(s) 232, 343, 526
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 5 cut(s) 156, 196, 420, 559, 562
MseI TTAA 5 cut(s) 38, 195, 270, 299, 465
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 520
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 520
NdeI CATATG 2 cut(s) 130, 184
NdeII GATC 1 cut(s) 544
NlaIII CATG 3 cut(s) 29, 452, 556
NlaIV GGNNCC 1 cut(s) 558
NspI RCATGY 2 cut(s) 29, 452
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 3 cut(s) 134, 156, 485
PfoI TCCNGGA 1 cut(s) 518
PkrI GCNGC 2 cut(s) 508, 540
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 228
RsaI GTAC 3 cut(s) 55, 121, 356
RsaNI GTAC 3 cut(s) 54, 120, 355
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 5 cut(s) 38, 195, 270, 299, 465
SatI GCNGC 2 cut(s) 507, 539
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 1 cut(s) 297
SetI ASST 6 cut(s) 20, 44, 195, 315, 412, 605
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 232, 343, 526
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 141, 414
StyD4I CCNGG 1 cut(s) 518
TaaI ACNGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 564
TasI AATT 3 cut(s) 232, 343, 526
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 3 cut(s) 134, 156, 485
Tru1I TTAA 5 cut(s) 38, 195, 270, 299, 465
Tru9I TTAA 5 cut(s) 38, 195, 270, 299, 465
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 506, 538
TspDTI ATGAA 3 cut(s) 147, 501, 510
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 343
XceI RCATGY 2 cut(s) 29, 452
XspI CTAG 2 cut(s) 141, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.