Rh6DG380700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012225
Physical Location & Seq
Forward (+)
57501588 .. 57505116
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG380700.1

Sequence Viewer

Length: 858 bp
ATGATGTTGGCGAAGGACGAGTGGACGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCTTCCTCGTCGTCTTCGCTTCTCCACTATCCCTTTGCGGCCAAGTCCGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGTCGGCGGCGGCGTCATCCTCGAGATGCGACGCCGTTTGCCGGAGGAACAACAGTAAGAAGGACGACTCGACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCAGTGGCAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAGTCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGACTACTTTTAAAGAGCAAAGAGCCAAAAATGAGAACTTAAAGAGAGTGAAGCTTGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCAGAGAATAGCACCTCCTAGTTTCGGACACTTTCCTTCTCATTTGCTTTCACATGCCACACCGTATGTTCATCCGTATCCACAACTGGATTCCTGCGATGAACACAAGGCTGCTTTGTCATCCGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTCGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

31.13

Weight (kDa)

8.79

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 808
AccBSI CCGCTC 3 cut(s) 92, 291, 620
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 5 cut(s) 48, 95, 185, 197, 216
AfaI GTAC 2 cut(s) 373, 608
AfiI CCNNNNNNNGG 3 cut(s) 158, 225, 671
AgsI TTSAA 2 cut(s) 472, 574
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 4 cut(s) 64, 445, 565, 855
AluI AGCT 4 cut(s) 64, 445, 565, 855
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 7 cut(s) 70, 169, 177, 264, 303, 758, 790
ApoI RAATTY 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 480
AsuC2I CCSGG 1 cut(s) 772
AsuII TTCGAA 1 cut(s) 342
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 808
BbsI GAAGAC 2 cut(s) 90, 102
BbvI GCAGC 7 cut(s) 57, 156, 189, 276, 315, 745, 777
BccI CCATC 3 cut(s) 329, 608, 654
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 735
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 258, 393, 666
BfuI GTATCC 1 cut(s) 735
Bme1390I CCNGG 2 cut(s) 286, 772
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 2 cut(s) 286, 772
BmsI GCATC 2 cut(s) 200, 251
BpiI GAAGAC 2 cut(s) 90, 102
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 772
BsaHI GRCGYC 5 cut(s) 48, 95, 185, 197, 216
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 225, 671
Bse1I ACTGG 2 cut(s) 636, 738
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 152, 366
BseGI GGATG 4 cut(s) 200, 718, 767, 855
BseLI CCNNNNNNNGG 3 cut(s) 158, 225, 671
BseNI ACTGG 2 cut(s) 636, 738
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 7 cut(s) 57, 156, 189, 276, 315, 745, 777
Bsh1236I CGCG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 4 cut(s) 166, 226, 324, 771
BslI CCNNNNNNNGG 3 cut(s) 158, 225, 671
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 362, 796
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 2 cut(s) 88, 154
BspLI GGNNCC 1 cut(s) 810
BspPI GGATC 1 cut(s) 357
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 3 cut(s) 92, 291, 620
BsrI ACTGG 2 cut(s) 636, 738
BssECI CCNNGG 2 cut(s) 152, 366
BssMI GATC 2 cut(s) 362, 796
BssNI GRCGYC 5 cut(s) 48, 95, 185, 197, 216
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 239, 711
Bst6I CTCTTC 2 cut(s) 339, 447
BstACI GRCGYC 5 cut(s) 48, 95, 185, 197, 216
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 90, 317
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 4 cut(s) 200, 718, 767, 855
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 2 cut(s) 365, 799
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 362, 796
BstMWI GCNNNNNNNGC 7 cut(s) 70, 191, 300, 303, 309, 312, 626
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 284, 770
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 7 cut(s) 57, 156, 189, 276, 315, 745, 777
BstV2I GAAGAC 2 cut(s) 90, 102
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 50, 759
BtsCI GGATG 4 cut(s) 200, 718, 767, 855
BtsI GCAGTG 2 cut(s) 304, 327
BtsIMutI CAGTG 2 cut(s) 304, 327
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 317
Cfr13I GGNCC 1 cut(s) 480
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 4 cut(s) 84, 174, 186, 224
Csp6I GTAC 2 cut(s) 372, 607
CviAII CATG 2 cut(s) 701, 805
CviQI GTAC 2 cut(s) 372, 607
DpnI GATC 2 cut(s) 364, 798
DpnII GATC 2 cut(s) 362, 796
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 339, 447
EarI CTCTTC 2 cut(s) 339, 447
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 704, 808
FaiI YATR 8 cut(s) 382, 384, 436, 438, 702, 714, 806, 844
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FatI CATG 2 cut(s) 700, 804
FauNDI CATATG 2 cut(s) 382, 436
FokI GGATG 3 cut(s) 187, 705, 754
FspBI CTAG 3 cut(s) 258, 393, 666
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 1 cut(s) 137
HapII CCGG 4 cut(s) 166, 226, 324, 771
HgaI GACGC 4 cut(s) 84, 174, 186, 224
Hin1I GRCGYC 5 cut(s) 48, 95, 185, 197, 216
Hin1II CATG 2 cut(s) 704, 808
HincII GTYRAC 1 cut(s) 641
HindII GTYRAC 1 cut(s) 641
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 9 cut(s) 83, 148, 251, 339, 347, 386, 408, 737, 824
HpaII CCGG 4 cut(s) 166, 226, 324, 771
Hpy166II GTNNAC 3 cut(s) 24, 390, 641
Hpy188I TCNGA 4 cut(s) 651, 674, 801, 835
Hpy188III TCNNGA 3 cut(s) 87, 207, 412
Hpy8I GTNNAC 3 cut(s) 24, 390, 641
Hpy99I CGWCG 7 cut(s) 47, 50, 59, 62, 109, 190, 218
HpyAV CCTTC 5 cut(s) 7, 73, 238, 330, 693
HpyCH4III ACNGT 2 cut(s) 239, 711
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 264, 580
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 191, 300, 303, 309, 312, 626
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 5 cut(s) 48, 95, 185, 197, 216
Hsp92II CATG 2 cut(s) 704, 808
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 362, 796
LmnI GCTCC 2 cut(s) 288, 617
Lsp1109I GCAGC 7 cut(s) 57, 156, 189, 276, 315, 745, 777
LweI GCATC 2 cut(s) 200, 251
MaeI CTAG 3 cut(s) 258, 393, 666
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 364, 798
MbiI CCGCTC 3 cut(s) 92, 291, 620
MboI GATC 2 cut(s) 362, 796
MboII GAAGA 7 cut(s) 90, 102, 356, 436, 439, 464, 576
MflI RGATCY 1 cut(s) 362
MluCI AATT 3 cut(s) 484, 595, 778
MlyI GAGTC 5 cut(s) 92, 245, 356, 395, 818
MnlI CCTC 9 cut(s) 62, 112, 214, 222, 408, 448, 672, 811, 814
MseI TTAA 3 cut(s) 447, 522, 551
MspA1I CMGCKG 2 cut(s) 154, 306
MspI CCGG 4 cut(s) 166, 226, 324, 771
MspR9I CCNGG 2 cut(s) 286, 772
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 2 cut(s) 88, 154
MwoI GCNNNNNNNGC 7 cut(s) 70, 191, 300, 303, 309, 312, 626
NciI CCSGG 1 cut(s) 772
NdeI CATATG 2 cut(s) 382, 436
NdeII GATC 2 cut(s) 362, 796
NlaIII CATG 2 cut(s) 704, 808
NlaIV GGNNCC 1 cut(s) 810
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 704
NspV TTCGAA 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 205
PcsI WCGNNNNNNNCGW 5 cut(s) 32, 51, 54, 92, 194
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 4 cut(s) 148, 339, 408, 737
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 2 cut(s) 284, 770
PleI GAGTC 5 cut(s) 91, 245, 355, 394, 818
PpsI GAGTC 5 cut(s) 91, 245, 355, 394, 818
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 1 cut(s) 480
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 373, 608
RsaNI GTAC 2 cut(s) 372, 607
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 447, 522, 551
Sau3AI GATC 2 cut(s) 362, 796
Sau96I GGNCC 1 cut(s) 480
SchI GAGTC 5 cut(s) 92, 245, 356, 395, 818
ScrFI CCNGG 2 cut(s) 286, 772
SetI ASST 6 cut(s) 51, 66, 447, 567, 664, 857
SfaNI GCATC 2 cut(s) 200, 251
Sfr274I CTCGAG 1 cut(s) 205
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 480
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 3 cut(s) 484, 595, 778
SspMI CTAG 3 cut(s) 258, 393, 666
StyD4I CCNGG 2 cut(s) 284, 770
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 239, 711
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 60, 206, 254, 342, 816
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 484, 595, 778
TfiI GAWTC 4 cut(s) 148, 339, 408, 737
Tru1I TTAA 3 cut(s) 447, 522, 551
Tru9I TTAA 3 cut(s) 447, 522, 551
TscAI CASTG 2 cut(s) 304, 334
TseI GCWGC 7 cut(s) 70, 169, 177, 264, 303, 758, 790
TspDTI ATGAA 2 cut(s) 707, 762
TspGWI ACGGA 2 cut(s) 133, 711
TspRI CASTG 2 cut(s) 304, 334
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 480
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 704
XhoI CTCGAG 1 cut(s) 205
XspI CTAG 3 cut(s) 258, 393, 666
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.