Rh6BG388800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012225
Physical Location & Seq
Forward (+)
61733950 .. 61736977
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG388800.1

Sequence Viewer

Length: 864 bp
ATGATGTTGGCGAAGGACGAGTGGACGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCGTCCTCGTCGTCTTCGCTTCTCCACTATCCCTTCACGGCCAAGTCGGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGTCGGCATCGGCGGCGGCGTCTTCCTCGAGATGCGACGCCGTTTGCCTGAGGAACAACAGTAAGAAGGACGACTCCACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCAGTGGCAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAATCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGACTACTTTTAAAGAGCAAAGAGCCAAAAATGAGAACTTAAAGAGAGTGAAGCTTGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCAGAGAATAGCACCTCCTAGTTTCGGACACTTTCCTTCACATTTGCTTTCACATGCCACACCGTATGTTCATCCGTATCCACAACTGGATTCCTGCGATGAACACAAGGCTGCTTTGTCATCCGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTCGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.28

Weight (kDa)

8.58

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 814
AccBSI CCGCTC 3 cut(s) 92, 297, 626
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 5 cut(s) 48, 95, 185, 203, 222
AfaI GTAC 2 cut(s) 379, 614
AfiI CCNNNNNNNGG 2 cut(s) 158, 677
AgsI TTSAA 2 cut(s) 478, 580
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 4 cut(s) 64, 451, 571, 861
AluI AGCT 4 cut(s) 64, 451, 571, 861
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 7 cut(s) 70, 169, 177, 270, 309, 764, 796
ApoI RAATTY 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 486
AxyI CCTNAGG 1 cut(s) 233
BanI GGYRCC 1 cut(s) 814
BbsI GAAGAC 2 cut(s) 102, 198
BbvI GCAGC 7 cut(s) 57, 156, 189, 282, 321, 751, 783
BccI CCATC 3 cut(s) 335, 614, 660
BceAI ACGGC 2 cut(s) 150, 209
BciT130I CCWGG 1 cut(s) 292
BciVI GTATCC 1 cut(s) 741
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 264, 399, 672
BfuI GTATCC 1 cut(s) 741
Bme1390I CCNGG 2 cut(s) 292, 778
Bme18I GGWCC 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 2 cut(s) 292, 778
BmsI GCATC 3 cut(s) 200, 206, 257
BpiI GAAGAC 2 cut(s) 102, 198
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpmI CTGGAG 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 778
BsaHI GRCGYC 5 cut(s) 48, 95, 185, 203, 222
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 677
Bse1I ACTGG 2 cut(s) 642, 744
Bse21I CCTNAGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 152, 372
BseGI GGATG 3 cut(s) 724, 773, 861
BseLI CCNNNNNNNGG 2 cut(s) 158, 677
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 642, 744
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 7 cut(s) 57, 156, 189, 282, 321, 751, 783
Bsh1236I CGCG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 814
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 3 cut(s) 166, 330, 777
BslI CCNNNNNNNGG 2 cut(s) 158, 677
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 368, 802
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 2 cut(s) 88, 154
BspLI GGNNCC 1 cut(s) 816
BspPI GGATC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 814
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 3 cut(s) 92, 297, 626
BsrI ACTGG 2 cut(s) 642, 744
BssECI CCNNGG 2 cut(s) 152, 372
BssMI GATC 2 cut(s) 368, 802
BssNI GRCGYC 5 cut(s) 48, 95, 185, 203, 222
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 245, 717
Bst6I CTCTTC 2 cut(s) 345, 453
BstACI GRCGYC 5 cut(s) 48, 95, 185, 203, 222
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 90, 323
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 724, 773, 861
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 2 cut(s) 371, 805
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 368, 802
BstMWI GCNNNNNNNGC 7 cut(s) 70, 197, 306, 309, 315, 318, 632
BstNI CCWGG 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 290, 776
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 7 cut(s) 57, 156, 189, 282, 321, 751, 783
BstV2I GAAGAC 2 cut(s) 102, 198
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 50, 765
BtsCI GGATG 3 cut(s) 724, 773, 861
BtsI GCAGTG 2 cut(s) 310, 333
BtsIMutI CAGTG 2 cut(s) 310, 333
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 323
Cfr13I GGNCC 1 cut(s) 486
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 4 cut(s) 84, 174, 192, 230
Csp6I GTAC 2 cut(s) 378, 613
CviAII CATG 2 cut(s) 707, 811
CviQI GTAC 2 cut(s) 378, 613
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 370, 804
DpnII GATC 2 cut(s) 368, 802
DraI TTTAAA 1 cut(s) 529
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 345, 453
EarI CTCTTC 2 cut(s) 345, 453
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 710, 814
FaiI YATR 8 cut(s) 388, 390, 442, 444, 708, 720, 812, 850
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 2 cut(s) 706, 810
FauNDI CATATG 2 cut(s) 388, 442
FokI GGATG 2 cut(s) 711, 760
FspBI CTAG 3 cut(s) 264, 399, 672
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 1 cut(s) 137
HapII CCGG 3 cut(s) 166, 330, 777
HgaI GACGC 4 cut(s) 84, 174, 192, 230
Hin1I GRCGYC 5 cut(s) 48, 95, 185, 203, 222
Hin1II CATG 2 cut(s) 710, 814
HincII GTYRAC 1 cut(s) 647
HindII GTYRAC 1 cut(s) 647
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 9 cut(s) 83, 148, 257, 345, 353, 392, 414, 743, 830
HpaII CCGG 3 cut(s) 166, 330, 777
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 24, 647
Hpy188I TCNGA 4 cut(s) 657, 680, 807, 841
Hpy188III TCNNGA 3 cut(s) 87, 213, 418
Hpy8I GTNNAC 2 cut(s) 24, 647
Hpy99I CGWCG 8 cut(s) 47, 50, 59, 62, 100, 109, 190, 224
HpyAV CCTTC 6 cut(s) 7, 73, 139, 244, 336, 699
HpyCH4III ACNGT 2 cut(s) 245, 717
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 270, 586
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 197, 306, 309, 315, 318, 632
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 5 cut(s) 48, 95, 185, 203, 222
Hsp92II CATG 2 cut(s) 710, 814
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 368, 802
LmnI GCTCC 2 cut(s) 294, 623
Lsp1109I GCAGC 7 cut(s) 57, 156, 189, 282, 321, 751, 783
LweI GCATC 3 cut(s) 200, 206, 257
MaeI CTAG 3 cut(s) 264, 399, 672
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 370, 804
MbiI CCGCTC 3 cut(s) 92, 297, 626
MboI GATC 2 cut(s) 368, 802
MboII GAAGA 7 cut(s) 102, 198, 362, 442, 445, 470, 582
MflI RGATCY 1 cut(s) 368
MluCI AATT 3 cut(s) 490, 601, 784
MlyI GAGTC 4 cut(s) 92, 251, 362, 824
MnlI CCTC 9 cut(s) 62, 112, 220, 228, 414, 454, 678, 817, 820
MseI TTAA 3 cut(s) 453, 528, 557
MspA1I CMGCKG 2 cut(s) 154, 312
MspI CCGG 3 cut(s) 166, 330, 777
MspR9I CCNGG 2 cut(s) 292, 778
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 2 cut(s) 88, 154
MwoI GCNNNNNNNGC 7 cut(s) 70, 197, 306, 309, 315, 318, 632
NciI CCSGG 1 cut(s) 778
NdeI CATATG 2 cut(s) 388, 442
NdeII GATC 2 cut(s) 368, 802
NlaIII CATG 2 cut(s) 710, 814
NlaIV GGNNCC 1 cut(s) 816
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 211
PcsI WCGNNNNNNNCGW 6 cut(s) 32, 51, 54, 92, 104, 200
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 5 cut(s) 148, 345, 392, 414, 743
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 2 cut(s) 290, 776
PleI GAGTC 4 cut(s) 91, 251, 361, 824
PpsI GAGTC 4 cut(s) 91, 251, 361, 824
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 816
PspPI GGNCC 1 cut(s) 486
PsuI RGATCY 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 379, 614
RsaNI GTAC 2 cut(s) 378, 613
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 453, 528, 557
Sau3AI GATC 2 cut(s) 368, 802
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 4 cut(s) 92, 251, 362, 824
ScrFI CCNGG 2 cut(s) 292, 778
SetI ASST 6 cut(s) 51, 66, 453, 573, 670, 863
SfaNI GCATC 3 cut(s) 200, 206, 257
Sfr274I CTCGAG 1 cut(s) 211
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 348
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 486
SlaI CTCGAG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 490, 601, 784
SspMI CTAG 3 cut(s) 264, 399, 672
StyD4I CCNGG 2 cut(s) 290, 776
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 245, 717
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 60, 212, 348, 822
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 490, 601, 784
TfiI GAWTC 5 cut(s) 148, 345, 392, 414, 743
Tru1I TTAA 3 cut(s) 453, 528, 557
Tru9I TTAA 3 cut(s) 453, 528, 557
TscAI CASTG 2 cut(s) 310, 340
TseI GCWGC 7 cut(s) 70, 169, 177, 270, 309, 764, 796
TspDTI ATGAA 3 cut(s) 405, 713, 768
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 2 cut(s) 310, 340
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 601
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 1 cut(s) 211
XspI CTAG 3 cut(s) 264, 399, 672
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.