Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Forward (+)

15638353 .. 15640517

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCGTTTCCGATTTAGGATTCGATTCGAGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGTTATTCGCCAGCGTTAATCAGACTAATCCATTCGCATCCCTCTCGTCCTCGGATCTTTCCAACAGAGGCAACAACAGCTTCTCTACCCAGCTCAATGATCTCTACACCAAGTATATGCCGGGAAAAGAGGAGGAGGAAGAAGTAGTTAATGGCGAGAAGAGGAAGAGGAAGAAGAAAGGTGGGCTCACACTGAAGATTAAGATCGCTAATCCTTCGTTGCGGCGGCTATTAAGCGGAGCAGTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCCGTTGGAGACAATCAGGACGCATCTAATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGTGTTCAGTGATATCATGAAGCATGAAGGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCAATGTCATTCGTGTTGCACCTGCTCGAGCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCGCCGCCACATGGACAAGAATCGAAAATCCCAATTCCAGCTTCTTTACTGGCTGGTGCCTGTGCTGGAGTTAGCCAGACACTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTTTACAAAGGGATTTTTGATGCGTTTCTCAAAATCATACGCGAGGAAGGACCCACAGAACTCTACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTTGCATATGATTCTTTGAGAAAAGCATACCGGAGTTTTTCAAAGCAGGAGAAGATTGGAAACATTGAGACTCTTTTGATAGGTTCTTTAGCAGGTGCACTATCGAGCACTGCAACTTTCCCTCTTGAAGTGGCCCGGAAGCATATGCAGGTGGGAGCTGTTAGCGGGAGGGTTGTGTACAAGAACATGTTGCACGCTCTGGTGACCATACTTGAGCATGAAGGTATTCTCGGTTGGTACAAAGGGCTTGGACCGAGTTGCTTGAAGTTGGTTCCTGCTGCTGGAATCTCCTTCATGTGTTATGAAGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

392

Amino Acids

42.57

Weight (kDa)

9.42

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	109 - 192	4.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	202 - 288	1.6e-25	Mitochondrial carrier protein
Mito_carr	PF00153	298 - 388	1.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	535, 914, 970
Acc36I	ACCTGC	3 cut(s)	535, 914, 970
AccB1I	GGYRCC	1 cut(s)	632
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	365
AccII	CGCG	1 cut(s)	753
AciI	CCGC	6 cut(s)	334, 337, 348, 365, 581, 996
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	3 cut(s)	326, 465, 475
AfaI	GTAC	2 cut(s)	1010, 1070
AfiI	CCNNNNNNNGG	3 cut(s)	110, 587, 1112
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	4 cut(s)	677, 873, 959, 1096
AhlI	ACTAGT	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AleI	CACNNNNGTG	1 cut(s)	446
Alw21I	GWGCWC	2 cut(s)	931, 941
Alw26I	GTCTC	4 cut(s)	389, 491, 551, 893
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	1 cut(s)	963
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	2 cut(s)	818, 1109
Asp700I	GAANNNNTTC	1 cut(s)	1056
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	761, 964, 1082
AsuC2I	CCSGG	2 cut(s)	234, 967
AsuHPI	GGTGA	1 cut(s)	1045
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	761, 1082
BaeGI	GKGCMC	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	931, 941
BbvI	GCAGC	2 cut(s)	830, 1096
BceAI	ACGGC	2 cut(s)	373, 521
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcnI	CCSGG	2 cut(s)	234, 967
BcoDI	GTCTC	4 cut(s)	389, 491, 551, 893
BcuI	ACTAGT	1 cut(s)	679
BfaI	CTAG	2 cut(s)	680, 792
BfmI	CTRYAG	1 cut(s)	775
BfuAI	ACCTGC	3 cut(s)	535, 914, 970
BisI	GCNGC	5 cut(s)	335, 338, 581, 819, 1110
BlsI	GCNGC	5 cut(s)	336, 339, 582, 820, 1111
Bme1390I	CCNGG	2 cut(s)	234, 967
Bme18I	GGWCC	2 cut(s)	761, 1082
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	3 cut(s)	761, 964, 1082
BmiI	GGNNCC	3 cut(s)	634, 763, 1104
BmrFI	CCNGG	2 cut(s)	234, 967
BmsI	GCATC	3 cut(s)	158, 418, 721
BpmI	CTGGAG	3 cut(s)	381, 421, 663
BpuEI	CTTGAG	1 cut(s)	1064
BpuMI	CCSGG	2 cut(s)	234, 967
BsaBI	GATNNNNATC	2 cut(s)	314, 1154
BsaI	GGTCTC	2 cut(s)	491, 551
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	2 cut(s)	11, 861
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 587, 1112
Bse1I	ACTGG	2 cut(s)	487, 630
Bse8I	GATNNNNATC	2 cut(s)	314, 1154
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	2 cut(s)	314, 1154
BseLI	CCNNNNNNNGG	3 cut(s)	110, 587, 1112
BseNI	ACTGG	2 cut(s)	487, 630
BseRI	GAGGAG	2 cut(s)	257, 260
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	2 cut(s)	830, 1096
BseYI	CCCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	1 cut(s)	965
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	931, 941
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	4 cut(s)	12, 233, 862, 967
BslI	CCNNNNNNNGG	3 cut(s)	110, 587, 1112
BsmAI	GTCTC	4 cut(s)	389, 491, 551, 893
BsnI	GGCC	1 cut(s)	965
Bso31I	GGTCTC	2 cut(s)	491, 551
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	3 cut(s)	300, 931, 941
Bsp1407I	TGTACA	1 cut(s)	1008
Bsp143I	GATC	3 cut(s)	166, 211, 315
BspACI	CCGC	6 cut(s)	334, 337, 348, 365, 581, 996
BspANI	GGCC	1 cut(s)	965
BspFNI	CGCG	1 cut(s)	753
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	634, 763, 1104
BspMI	ACCTGC	3 cut(s)	535, 914, 970
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	491, 551
BsrBI	CCGCTC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	1008
BsrI	ACTGG	2 cut(s)	487, 630
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	166, 211, 315
Bst4CI	ACNGT	2 cut(s)	379, 562
Bst6I	CTCTTC	3 cut(s)	266, 272, 494
BstAUI	TGTACA	1 cut(s)	1008
BstC8I	GCNNGC	3 cut(s)	124, 1026, 1141
BstEII	GGTNACC	1 cut(s)	1033
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	169, 214, 318
BstMAI	GTCTC	4 cut(s)	389, 491, 551, 893
BstMBI	GATC	3 cut(s)	166, 211, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 189
BstNSI	RCATGY	1 cut(s)	1021
BstPI	GGTNACC	1 cut(s)	1033
BstSCI	CCNGG	2 cut(s)	232, 965
BstSFI	CTRYAG	1 cut(s)	775
BstSLI	GKGCMC	1 cut(s)	931
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	830, 1096
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	965
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	4 cut(s)	302, 441, 460, 939
BveI	ACCTGC	3 cut(s)	535, 914, 970
Cac8I	GCNNGC	3 cut(s)	124, 1026, 1141
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	761, 964, 1082
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	1009, 1069
CviAII	CATG	6 cut(s)	463, 470, 587, 1018, 1049, 1126
CviQI	GTAC	2 cut(s)	1009, 1069
DpnI	GATC	3 cut(s)	168, 213, 317
DpnII	GATC	3 cut(s)	166, 211, 315
Eam1104I	CTCTTC	3 cut(s)	266, 272, 494
EarI	CTCTTC	3 cut(s)	266, 272, 494
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	2 cut(s)	491, 551
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	761, 1082
Eco57I	CTGAAG	3 cut(s)	326, 465, 475
Eco88I	CYCGRG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	1033
EcoO109I	RGGNCCY	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	1033
EcoRV	GATATC	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	6 cut(s)	466, 473, 590, 1021, 1052, 1129
FatI	CATG	6 cut(s)	462, 469, 586, 1017, 1048, 1125
FauI	CCCGC	1 cut(s)	989
FauNDI	CATATG	2 cut(s)	838, 975
Fnu4HI	GCNGC	5 cut(s)	335, 338, 581, 819, 1110
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	335, 338, 581, 819, 1110
FspBI	CTAG	2 cut(s)	680, 792
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	5 cut(s)	335, 338, 581, 819, 1110
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	3 cut(s)	381, 421, 663
HaeIII	GGCC	1 cut(s)	965
HapII	CCGG	4 cut(s)	12, 233, 862, 967
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	6 cut(s)	466, 473, 590, 1021, 1052, 1129
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	2 cut(s)	1137, 1173
HinfI	GANTC	9 cut(s)	15, 32, 69, 74, 596, 688, 842, 901, 1116
HpaII	CCGG	4 cut(s)	12, 233, 862, 967
HphI	GGTGA	1 cut(s)	1045
Hpy166II	GTNNAC	4 cut(s)	565, 715, 929, 1009
Hpy188I	TCNGA	4 cut(s)	61, 135, 166, 705
Hpy188III	TCNNGA	9 cut(s)	372, 403, 463, 556, 661, 674, 685, 956, 1159
Hpy8I	GTNNAC	4 cut(s)	565, 715, 929, 1009
Hpy99I	CGWCG	2 cut(s)	32, 542
HpyAV	CCTTC	5 cut(s)	336, 467, 752, 1046, 1132
HpyCH4III	ACNGT	2 cut(s)	379, 562
HpyCH4V	TGCA	7 cut(s)	524, 836, 929, 944, 979, 1024, 1143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 189
Hsp92II	CATG	6 cut(s)	466, 473, 590, 1021, 1052, 1129
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	166, 211, 315
LmnI	GCTCC	4 cut(s)	350, 362, 793, 986
Lsp1109I	GCAGC	2 cut(s)	830, 1096
LweI	GCATC	3 cut(s)	158, 418, 721
MaeI	CTAG	2 cut(s)	680, 792
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	3 cut(s)	168, 213, 317
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	3 cut(s)	166, 211, 315
MboII	GAAGA	9 cut(s)	263, 283, 289, 295, 298, 319, 481, 895, 1159
MfeI	CAATTG	2 cut(s)	20, 105
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	300, 931, 941
MluCI	AATT	8 cut(s)	20, 94, 105, 499, 572, 609, 699, 826
MlyI	GAGTC	2 cut(s)	682, 895
MmeI	TCCRAC	3 cut(s)	198, 372, 458
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	4 cut(s)	129, 261, 312, 344
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	4 cut(s)	12, 233, 862, 967
MspR9I	CCNGG	2 cut(s)	234, 967
MunI	CAATTG	2 cut(s)	20, 105
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	87, 189
NciI	CCSGG	2 cut(s)	234, 967
NdeI	CATATG	2 cut(s)	838, 975
NdeII	GATC	3 cut(s)	166, 211, 315
NlaIII	CATG	6 cut(s)	466, 473, 590, 1021, 1052, 1129
NlaIV	GGNNCC	3 cut(s)	634, 763, 1104
NmuCI	GTSAC	1 cut(s)	1033
NspI	RCATGY	1 cut(s)	1021
OliI	CACNNNNGTG	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	531
PagI	TCATGA	1 cut(s)	462
PaqCI	CACCTGC	3 cut(s)	535, 914, 970
PciI	ACATGT	1 cut(s)	1017
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	7 cut(s)	15, 32, 69, 74, 596, 842, 1116
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	336, 339, 582, 820, 1111
PleI	GAGTC	2 cut(s)	682, 895
PpsI	GAGTC	2 cut(s)	682, 895
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	1 cut(s)	1017
Psp5II	RGGWCCY	1 cut(s)	761
PspEI	GGTNACC	1 cut(s)	1033
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	634, 763, 1104
PspPI	GGNCC	3 cut(s)	761, 964, 1082
PspPPI	RGGWCCY	1 cut(s)	761
PspXI	VCTCGAGB	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	1010, 1070
RsaNI	GTAC	2 cut(s)	1009, 1069
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	129, 261, 312, 344
SatI	GCNGC	5 cut(s)	335, 338, 581, 819, 1110
Sau3AI	GATC	3 cut(s)	166, 211, 315
Sau96I	GGNCC	3 cut(s)	761, 964, 1082
SchI	GAGTC	2 cut(s)	682, 895
ScrFI	CCNGG	2 cut(s)	234, 967
SduI	GDGCHC	3 cut(s)	300, 931, 941
SfaNI	GCATC	3 cut(s)	158, 418, 721
SfcI	CTRYAG	1 cut(s)	775
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	761, 1082
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	531, 1043
SmoI	CTYRAG	2 cut(s)	531, 1043
SpeI	ACTAGT	1 cut(s)	679
Sse9I	AATT	8 cut(s)	20, 94, 105, 499, 572, 609, 699, 826
SsiI	CCGC	6 cut(s)	334, 337, 348, 365, 581, 996
SspMI	CTAG	2 cut(s)	680, 792
StyD4I	CCNGG	2 cut(s)	232, 965
TaaI	ACNGT	2 cut(s)	379, 562
TaqII	GACCGA	1 cut(s)	1099
TasI	AATT	8 cut(s)	20, 94, 105, 499, 572, 609, 699, 826
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	3 cut(s)	337, 340, 583
TfiI	GAWTC	7 cut(s)	15, 32, 69, 74, 596, 842, 1116
Tru1I	TTAA	4 cut(s)	129, 261, 312, 344
Tru9I	TTAA	4 cut(s)	129, 261, 312, 344
TscAI	CASTG	4 cut(s)	309, 448, 460, 946
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	2 cut(s)	818, 1109
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	5 cut(s)	479, 486, 1065, 1114, 1149
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	4 cut(s)	309, 448, 460, 946
Van91I	CCANNNNNTGG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	927
VpaK11BI	GGWCC	2 cut(s)	761, 1082
XceI	RCATGY	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	2 cut(s)	680, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.