Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Forward (+)

42684726 .. 42685645

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAACCATAGCAAAGGAAGCAGGTGTGCTGAAACTGGTGCGCCCTGGTAGGCGAGTGGAGATTCATCGGGTACCAATTACTGCAGCTGAGGTCATGAGAAGGTACCCGAGGCACAGCATCACTCGCCCCGATATCTTCGAGTTCCCATGGATTGTGGTTAAGCCAGAAGCAGTTTTGACCCCTGGAACCGCTGGAAGAGTGTTCTTCATAGTTCCTAACCGCACTATCTATCAGTTGCTTAAAGCTAGAGAGAACTCTGATTCTGATCAGTCTTCACCTTCAGCTTCGCAGCAGAAACAACAAGAGTCTCCGAAAGATCAAGCTCAACAAGAATCGAAAAAGACCTTCCCACCCAACAGGACAGATGCTGGGATGACACCAAAGCACCAAGAGCACAGGCGGTGGCTTAAGCATCAGTTCTTGAACATATCTTGTGCTACTACTACTGTGTGTCCTGCTGAAGAACAAGACTATGACAAAGAAGTACGAAGAAATGTACAAAGGGTGTCTGCGCCGGTGTTGGTAGGCCACAAGACAGCTCAGGCAGAGCCTAAACGAAAATCATCATCTCTATCTTCAAAAAATGAGACTAGAAAAGGTAAAGCTAGCCTCGGTAGCATTACTGGCAAACTTGGTGATCTCAAGTTTACAACCAGTAAACAGGTCCCCGCCCTGAAATCTTGTATAAGAAAACCAGATAGTGCTCCTAAGTTGCGTCAACTTATAGTGAAATTTGACTTGCCAGACGACTATGTGGAGCGGCAAACCAAGGCCGCTGATTGTCGGATGCCATATCCAGACTATAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

271

Amino Acids

30.69

Weight (kDa)

9.93

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	7 - 187	1.1e-12	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
Acc65I	GGTACC	2 cut(s)	73, 105
AccB1I	GGYRCC	2 cut(s)	73, 105
AccBSI	CCGCTC	1 cut(s)	763
AciI	CCGC	6 cut(s)	192, 223, 403, 672, 763, 777
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	2 cut(s)	267, 483
AfaI	GTAC	4 cut(s)	75, 107, 489, 501
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	427, 582
AjnI	CCWGG	2 cut(s)	46, 184
AluBI	AGCT	6 cut(s)	89, 248, 287, 326, 542, 608
AluI	AGCT	6 cut(s)	89, 248, 287, 326, 542, 608
Alw21I	GWGCWC	2 cut(s)	399, 709
Alw26I	GTCTC	2 cut(s)	315, 584
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	529, 774
ApeKI	GCWGC	2 cut(s)	86, 292
ApoI	RAATTY	1 cut(s)	734
Asp718I	GGTACC	2 cut(s)	73, 105
AspLEI	GCGC	2 cut(s)	45, 517
AspS9I	GGNCC	1 cut(s)	667
AsuHPI	GGTGA	2 cut(s)	270, 650
AsuNHI	GCTAGC	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	667
BanI	GGYRCC	2 cut(s)	73, 105
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	399, 709
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	98, 304
BciT130I	CCWGG	2 cut(s)	48, 186
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	315, 584
BfaI	CTAG	3 cut(s)	249, 594, 609
BfmI	CTRYAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	4 cut(s)	87, 293, 764, 777
BlsI	GCNGC	4 cut(s)	88, 294, 765, 778
Bme1390I	CCNGG	2 cut(s)	48, 186
Bme18I	GGWCC	1 cut(s)	667
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	5 cut(s)	7, 75, 107, 190, 669
BmrFI	CCNGG	2 cut(s)	48, 186
BmsI	GCATC	4 cut(s)	129, 358, 424, 780
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	2 cut(s)	90, 543
BpuEI	CTTGAG	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	6 cut(s)	46, 110, 149, 184, 613, 771
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	3 cut(s)	42, 631, 657
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	48, 186
BseDI	CCNNGG	6 cut(s)	46, 110, 149, 184, 613, 771
BseGI	GGATG	2 cut(s)	381, 795
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	81, 557
BseNI	ACTGG	3 cut(s)	42, 631, 657
BseXI	GCAGC	2 cut(s)	98, 304
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	2 cut(s)	531, 776
BshNI	GGYRCC	2 cut(s)	73, 105
BsiHKAI	GWGCWC	2 cut(s)	399, 709
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	315, 584
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	531, 776
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	399, 709
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	268, 319, 640
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	6 cut(s)	192, 223, 403, 672, 763, 777
BspANI	GGCC	2 cut(s)	531, 776
BspCNI	CTCAG	2 cut(s)	82, 556
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	5 cut(s)	7, 75, 107, 190, 669
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	612
BspT107I	GGYRCC	2 cut(s)	73, 105
BspTI	CTTAAG	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	42, 631, 657
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	46, 110, 149, 184, 613, 771
BssMI	GATC	3 cut(s)	268, 319, 640
BssT1I	CCWWGG	2 cut(s)	149, 771
Bst2UI	CCWGG	2 cut(s)	48, 186
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	90, 543, 711
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	381, 795
BstHHI	GCGC	2 cut(s)	45, 517
BstKTI	GATC	3 cut(s)	271, 322, 643
BstMAI	GTCTC	2 cut(s)	315, 584
BstMBI	GATC	3 cut(s)	268, 319, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 126, 394, 618, 627
BstNI	CCWGG	2 cut(s)	48, 186
BstSCI	CCNGG	2 cut(s)	46, 184
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	98, 304
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	531, 776
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	381, 795
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	2 cut(s)	45, 517
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	667
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	4 cut(s)	74, 106, 488, 500
CviAII	CATG	2 cut(s)	97, 150
CviQI	GTAC	4 cut(s)	74, 106, 488, 500
DdeI	CTNAG	3 cut(s)	90, 543, 711
DpnI	GATC	3 cut(s)	270, 321, 642
DpnII	GATC	3 cut(s)	268, 319, 640
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	149, 771
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	267, 483
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRII	CCWGG	2 cut(s)	46, 184
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	149, 771
ErhI	CCWWGG	2 cut(s)	149, 771
FaeI	CATG	2 cut(s)	100, 153
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	2 cut(s)	96, 149
FauI	CCCGC	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	4 cut(s)	87, 293, 764, 777
FokI	GGATG	2 cut(s)	388, 802
Fsp4HI	GCNGC	4 cut(s)	87, 293, 764, 777
FspBI	CTAG	3 cut(s)	249, 594, 609
GlaI	GCGC	2 cut(s)	44, 516
GluI	GCNGC	4 cut(s)	87, 293, 764, 777
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	531, 776
HapII	CCGG	1 cut(s)	518
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	2 cut(s)	45, 517
Hin1II	CATG	2 cut(s)	100, 153
Hin6I	GCGC	2 cut(s)	43, 515
HinP1I	GCGC	2 cut(s)	43, 515
HincII	GTYRAC	1 cut(s)	722
HindII	GTYRAC	1 cut(s)	722
HinfI	GANTC	4 cut(s)	64, 263, 308, 335
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	2 cut(s)	270, 650
Hpy166II	GTNNAC	3 cut(s)	651, 662, 722
Hpy188I	TCNGA	4 cut(s)	262, 268, 315, 789
Hpy188III	TCNNGA	3 cut(s)	97, 424, 800
Hpy8I	GTNNAC	3 cut(s)	651, 662, 722
HpyAV	CCTTC	3 cut(s)	96, 291, 358
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 126, 394, 618, 627
HpyF3I	CTNAG	3 cut(s)	90, 543, 711
Hsp92II	CATG	2 cut(s)	100, 153
HspAI	GCGC	2 cut(s)	43, 515
KpnI	GGTACC	2 cut(s)	77, 109
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	268, 319, 640
LmnI	GCTCC	2 cut(s)	712, 760
Lsp1109I	GCAGC	2 cut(s)	98, 304
LweI	GCATC	4 cut(s)	129, 358, 424, 780
MaeI	CTAG	3 cut(s)	249, 594, 609
MalI	GATC	3 cut(s)	270, 321, 642
MbiI	CCGCTC	1 cut(s)	763
MboI	GATC	3 cut(s)	268, 319, 640
MboII	GAAGA	7 cut(s)	130, 199, 210, 267, 476, 504, 570
MhlI	GDGCHC	2 cut(s)	399, 709
MluCI	AATT	2 cut(s)	78, 734
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	3 cut(s)	85, 105, 623
MseI	TTAA	3 cut(s)	162, 243, 411
MspA1I	CMGCKG	3 cut(s)	89, 194, 779
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	48, 186
MvaI	CCWGG	2 cut(s)	48, 186
MwoI	GCNNNNNNNGC	5 cut(s)	20, 126, 394, 618, 627
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	268, 319, 640
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	2 cut(s)	100, 153
NlaIV	GGNNCC	5 cut(s)	7, 75, 107, 190, 669
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	64, 263, 335
PkrI	GCNGC	4 cut(s)	88, 294, 765, 778
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	46, 184
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	2 cut(s)	46, 184
PspN4I	GGNNCC	5 cut(s)	7, 75, 107, 190, 669
PspPI	GGNCC	1 cut(s)	667
PspPPI	RGGWCCY	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	4 cut(s)	75, 107, 489, 501
RsaNI	GTAC	4 cut(s)	74, 106, 488, 500
SaqAI	TTAA	3 cut(s)	162, 243, 411
SatI	GCNGC	4 cut(s)	87, 293, 764, 777
Sau3AI	GATC	3 cut(s)	268, 319, 640
Sau96I	GGNCC	1 cut(s)	667
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	48, 186
SduI	GDGCHC	2 cut(s)	399, 709
SfaNI	GCATC	4 cut(s)	129, 358, 424, 780
SfcI	CTRYAG	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	667
SmlI	CTYRAG	2 cut(s)	410, 644
SmoI	CTYRAG	2 cut(s)	410, 644
Sse9I	AATT	2 cut(s)	78, 734
SsiI	CCGC	6 cut(s)	192, 223, 403, 672, 763, 777
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	3 cut(s)	249, 594, 609
StyD4I	CCNGG	2 cut(s)	46, 184
StyI	CCWWGG	2 cut(s)	149, 771
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	141, 338
TasI	AATT	2 cut(s)	78, 734
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	2 cut(s)	766, 779
TfiI	GAWTC	3 cut(s)	64, 263, 335
Tru1I	TTAA	3 cut(s)	162, 243, 411
Tru9I	TTAA	3 cut(s)	162, 243, 411
TseI	GCWGC	2 cut(s)	86, 292
TspDTI	ATGAA	2 cut(s)	56, 199
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	1 cut(s)	734
XspI	CTAG	3 cut(s)	249, 594, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.