Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029323.1

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Reverse (-)

5933 .. 8420

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029323.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggggcggagagatgttcaggttttcgatgacaggagcgatggattcttctccgtttgcaatttggggtttcaatcgagtcctcaacaggtgcagtatccccacgccggaggcttattcgccagcgtttcccaagtcggaatggggttcggagtctcgccaacgccggacccgcaaaacccgcgcggggacggcggcggcatgaagctgccgtacgccgacctctacatgaagtatgtggagggcattaagaattttggggccaaggaggaggaggtagtagaaggggaaggggtggtgaagaagaagaagaagggtggtctcaagttgaagattaagattgctaatccttctctgaggcgattgattagtggtgcggtggccggagcggtgtcgaggacggcggtggcgccgttggagactataaggacgcatttgatggttgggagtagtgggaattcgtgtactgaggtgtttactgatattatgaaggtggatgggtggacgggattgtttagggggaatttggtcaatgtgattcgggttgcgccgagcaaggcaatagagctgtttgcttatgatacagttaataagcacctgtcgcccaaagctggagaacagtcgaaacttccaattcctgcctcattagttgcaggtgcatgtgctggagtgagctccacacttatcacatacccccttgagttactaaagactcggctaactattcagagaggcgtatataatggccttcttgatgcatttgtaaaaattattcgagaagagggacctgcagagctctatagaggtcttgcacccagtcttattggagtcattccttatgctgccacaaattactgtgcttatgacacattacggaaagcctatcgtaagattttcaagcaggagaagattgggaacattcagacccttttaattggatcagcagctggtgctatttcaagtactgcaactttccctcttgaagtagctcgcaaacatatgcaggtgggggccgtgggtggaaggcagtataatgatgtgattcatgccctcgcaagcatacttgaacatgaaggtattgctggtttatacagagggctcgggcctagctgcatgaagttggtgcctgcagcagggatttctttcatgtgctacgaagcaatgaagaagatactggtagaggatgatgaggaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

399

Amino Acids

42.81

Weight (kDa)

9.1

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	644, 994
Acc36I	ACCTGC	3 cut(s)	644, 796, 994
AccB1I	GGYRCC	2 cut(s)	409, 1123
AccBSI	CCGCTC	1 cut(s)	389
AccII	CGCG	2 cut(s)	184, 186
AciI	CCGC	9 cut(s)	7, 173, 182, 186, 195, 198, 377, 389, 404
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	3 cut(s)	253, 457, 523
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	3 cut(s)	215, 466, 964
AfiI	CCNNNNNNNGG	4 cut(s)	107, 187, 611, 1133
AgsI	TTSAA	6 cut(s)	74, 331, 898, 960, 983, 1067
AluBI	AGCT	8 cut(s)	208, 568, 611, 675, 796, 947, 989, 1110
AluI	AGCT	8 cut(s)	208, 568, 611, 675, 796, 947, 989, 1110
Alw21I	GWGCWC	2 cut(s)	677, 798
Alw26I	GTCTC	3 cut(s)	160, 326, 413
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	1100
AoxI	GGCC	5 cut(s)	261, 381, 745, 1011, 1103
ApeKI	GCWGC	5 cut(s)	208, 842, 944, 1110, 1130
ApoI	RAATTY	3 cut(s)	253, 457, 523
AspLEI	GCGC	3 cut(s)	186, 412, 550
AspS9I	GGNCC	5 cut(s)	169, 261, 785, 1011, 1103
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	1100
AvaII	GGWCC	2 cut(s)	169, 785
BanI	GGYRCC	2 cut(s)	409, 1123
BanII	GRGCYC	3 cut(s)	677, 798, 1101
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	2 cut(s)	677, 798
BbvI	GCAGC	5 cut(s)	195, 829, 956, 1097, 1142
BccI	CCATC	3 cut(s)	35, 433, 491
BceAI	ACGGC	5 cut(s)	196, 208, 397, 417, 998
BciVI	GTATCC	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	160, 326, 413
BfaI	CTAG	1 cut(s)	1107
BfmI	CTRYAG	3 cut(s)	789, 799, 1128
BfoI	RGCGCY	1 cut(s)	413
BfuAI	ACCTGC	3 cut(s)	644, 796, 994
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	7 cut(s)	196, 199, 209, 843, 945, 1111, 1131
BlsI	GCNGC	7 cut(s)	197, 200, 210, 844, 946, 1112, 1132
BmcAI	AGTACT	1 cut(s)	964
Bme18I	GGWCC	2 cut(s)	169, 785
BmeT110I	CYCGRG	1 cut(s)	1100
BmgT120I	GGNCC	5 cut(s)	169, 261, 785, 1011, 1103
BmiI	GGNNCC	6 cut(s)	171, 262, 411, 786, 1012, 1125
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	1 cut(s)	745
BmuI	ACTGGG	1 cut(s)	810
BpmI	CTGGAG	2 cut(s)	633, 687
BpuEI	CTTGAG	2 cut(s)	308, 719
BsaHI	GRCGYC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	264, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 187, 611, 1133
Bse1I	ACTGG	2 cut(s)	816, 1179
Bse3DI	GCAATG	1 cut(s)	1167
BseDI	CCNNGG	2 cut(s)	264, 1014
BseGI	GGATG	2 cut(s)	502, 1189
BseLI	CCNNNNNNNGG	4 cut(s)	107, 187, 611, 1133
BseMI	GCAATG	1 cut(s)	1167
BseMII	CTCAG	2 cut(s)	347, 459
BseNI	ACTGG	2 cut(s)	816, 1179
BseRI	GAGGAG	2 cut(s)	284, 287
BseXI	GCAGC	5 cut(s)	195, 829, 956, 1097, 1142
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	184, 186
BshFI	GGCC	5 cut(s)	263, 383, 747, 1013, 1105
BshNI	GGYRCC	2 cut(s)	409, 1123
BsiHKAI	GWGCWC	2 cut(s)	677, 798
BsiHKCI	CYCGRG	1 cut(s)	1100
BsiSI	CCGG	3 cut(s)	108, 167, 384
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	203, 798
BslI	CCNNNNNNNGG	4 cut(s)	107, 187, 611, 1133
BsmAI	GTCTC	3 cut(s)	160, 326, 413
BsmFI	GGGAC	2 cut(s)	203, 798
BsnI	GGCC	5 cut(s)	263, 383, 747, 1013, 1105
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	1100
Bsp1286I	GDGCHC	3 cut(s)	677, 798, 1101
Bsp143I	GATC	1 cut(s)	938
BspACI	CCGC	9 cut(s)	7, 173, 182, 186, 195, 198, 377, 389, 404
BspANI	GGCC	5 cut(s)	263, 383, 747, 1013, 1105
BspCNI	CTCAG	2 cut(s)	348, 460
BspFNI	CGCG	2 cut(s)	184, 186
BspLI	GGNNCC	6 cut(s)	171, 262, 411, 786, 1012, 1125
BspMAI	CTGCAG	2 cut(s)	793, 1132
BspMI	ACCTGC	3 cut(s)	644, 796, 994
BspPI	GGATC	1 cut(s)	946
BspT107I	GGYRCC	2 cut(s)	409, 1123
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	1167
BsrI	ACTGG	2 cut(s)	816, 1179
BssECI	CCNNGG	2 cut(s)	264, 1014
BssMI	GATC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	586, 621, 857
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	4 cut(s)	124, 991, 1057, 1128
BstDEI	CTNAG	2 cut(s)	356, 468
BstDSI	CCRYGG	1 cut(s)	1014
BstENI	CCTNNNNNAGG	1 cut(s)	1131
BstF5I	GGATG	2 cut(s)	502, 1189
BstFNI	CGCG	2 cut(s)	184, 186
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	3 cut(s)	186, 412, 550
BstKTI	GATC	1 cut(s)	941
BstMAI	GTCTC	3 cut(s)	160, 326, 413
BstMBI	GATC	1 cut(s)	938
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 181, 192, 601, 950
BstNSI	RCATGY	1 cut(s)	663
BstSFI	CTRYAG	3 cut(s)	789, 799, 1128
BstUI	CGCG	2 cut(s)	184, 186
BstV1I	GCAGC	5 cut(s)	195, 829, 956, 1097, 1142
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	5 cut(s)	263, 383, 747, 1013, 1105
BtgI	CCRYGG	1 cut(s)	1014
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	502, 1189
BveI	ACCTGC	3 cut(s)	644, 796, 994
Cac8I	GCNNGC	4 cut(s)	124, 991, 1057, 1128
CaiI	CAGNNNCTG	1 cut(s)	947
CfoI	GCGC	3 cut(s)	186, 412, 550
Cfr13I	GGNCC	5 cut(s)	169, 261, 785, 1011, 1103
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	214, 465, 963
CviAII	CATG	7 cut(s)	202, 229, 660, 1046, 1070, 1114, 1147
CviQI	GTAC	3 cut(s)	214, 465, 963
DdeI	CTNAG	2 cut(s)	356, 468
DinI	GGCGCC	1 cut(s)	411
DpnI	GATC	1 cut(s)	940
DpnII	GATC	1 cut(s)	938
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	2 cut(s)	675, 796
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	3 cut(s)	677, 798, 1101
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	169, 785
Eco53kI	GAGCTC	2 cut(s)	675, 796
Eco88I	CYCGRG	1 cut(s)	1100
EcoICRI	GAGCTC	2 cut(s)	675, 796
EcoNI	CCTNNNNNAGG	1 cut(s)	1131
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	3 cut(s)	677, 798, 1101
EgeI	GGCGCC	1 cut(s)	411
EheI	GGCGCC	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	7 cut(s)	205, 232, 663, 1049, 1073, 1117, 1150
FaqI	GGGAC	2 cut(s)	203, 798
FatI	CATG	7 cut(s)	201, 228, 659, 1045, 1069, 1113, 1146
FauI	CCCGC	3 cut(s)	179, 180, 189
FauNDI	CATATG	1 cut(s)	999
Fnu4HI	GCNGC	7 cut(s)	196, 199, 209, 843, 945, 1111, 1131
FokI	GGATG	2 cut(s)	509, 1196
FriOI	GRGCYC	3 cut(s)	677, 798, 1101
Fsp4HI	GCNGC	7 cut(s)	196, 199, 209, 843, 945, 1111, 1131
FspBI	CTAG	1 cut(s)	1107
GlaI	GCGC	3 cut(s)	185, 411, 549
GluI	GCNGC	7 cut(s)	196, 199, 209, 843, 945, 1111, 1131
GsuI	CTGGAG	2 cut(s)	633, 687
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	5 cut(s)	263, 383, 747, 1013, 1105
HapII	CCGG	3 cut(s)	108, 167, 384
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	3 cut(s)	186, 412, 550
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	7 cut(s)	205, 232, 663, 1049, 1073, 1117, 1150
Hin6I	GCGC	3 cut(s)	184, 410, 548
HinP1I	GCGC	3 cut(s)	184, 410, 548
HinfI	GANTC	7 cut(s)	45, 79, 153, 538, 712, 828, 1042
HpaII	CCGG	3 cut(s)	108, 167, 384
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	465, 477, 504
Hpy188I	TCNGA	5 cut(s)	140, 152, 357, 729, 924
Hpy188III	TCNNGA	3 cut(s)	752, 776, 980
Hpy8I	GTNNAC	3 cut(s)	465, 477, 504
HpyAV	CCTTC	8 cut(s)	278, 284, 307, 360, 484, 758, 1017, 1067
HpyCH4III	ACNGT	3 cut(s)	586, 621, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 181, 192, 601, 950
HpyF3I	CTNAG	2 cut(s)	356, 468
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	7 cut(s)	205, 232, 663, 1049, 1073, 1117, 1150
HspAI	GCGC	3 cut(s)	184, 410, 548
KasI	GGCGCC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	938
LmnI	GCTCC	3 cut(s)	36, 386, 680
Lsp1109I	GCAGC	5 cut(s)	195, 829, 956, 1097, 1142
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	1107
MaeIII	GTNAC	1 cut(s)	702
MalI	GATC	1 cut(s)	940
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	1 cut(s)	938
MhlI	GDGCHC	3 cut(s)	677, 798, 1101
MluCI	AATT	8 cut(s)	61, 253, 457, 523, 633, 768, 850, 933
Mly113I	GGCGCC	1 cut(s)	410
MlyI	GAGTC	4 cut(s)	88, 162, 706, 837
MmeI	TCCRAC	2 cut(s)	118, 396
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	4 cut(s)	249, 336, 588, 932
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	3 cut(s)	108, 167, 384
MvnI	CGCG	2 cut(s)	184, 186
MwoI	GCNNNNNNNGC	5 cut(s)	172, 181, 192, 601, 950
NarI	GGCGCC	1 cut(s)	410
NdeI	CATATG	1 cut(s)	999
NdeII	GATC	1 cut(s)	938
NlaIII	CATG	7 cut(s)	205, 232, 663, 1049, 1073, 1117, 1150
NlaIV	GGNNCC	6 cut(s)	171, 262, 411, 786, 1012, 1125
NmeAIII	GCCGAG	2 cut(s)	576, 694
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	1 cut(s)	663
PaqCI	CACCTGC	2 cut(s)	644, 994
PfeI	GAWTC	3 cut(s)	45, 538, 1042
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	7 cut(s)	197, 200, 210, 844, 946, 1112, 1132
PleI	GAGTC	4 cut(s)	87, 161, 706, 836
PluTI	GGCGCC	1 cut(s)	413
PpsI	GAGTC	4 cut(s)	87, 161, 706, 836
PpuMI	RGGWCCY	1 cut(s)	785
Psp124BI	GAGCTC	2 cut(s)	677, 798
Psp5II	RGGWCCY	1 cut(s)	785
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	6 cut(s)	171, 262, 411, 786, 1012, 1125
PspPI	GGNCC	5 cut(s)	169, 261, 785, 1011, 1103
PspPPI	RGGWCCY	1 cut(s)	785
PstI	CTGCAG	2 cut(s)	793, 1132
PstNI	CAGNNNCTG	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	3 cut(s)	215, 466, 964
RsaNI	GTAC	3 cut(s)	214, 465, 963
SacI	GAGCTC	2 cut(s)	677, 798
SaqAI	TTAA	4 cut(s)	249, 336, 588, 932
SatI	GCNGC	7 cut(s)	196, 199, 209, 843, 945, 1111, 1131
Sau3AI	GATC	1 cut(s)	938
Sau96I	GGNCC	5 cut(s)	169, 261, 785, 1011, 1103
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	4 cut(s)	88, 162, 706, 837
SduI	GDGCHC	3 cut(s)	677, 798, 1101
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	3 cut(s)	789, 799, 1128
SfoI	GGCGCC	1 cut(s)	411
SinI	GGWCC	2 cut(s)	169, 785
SmlI	CTYRAG	2 cut(s)	323, 698
SmoI	CTYRAG	2 cut(s)	323, 698
Sse9I	AATT	8 cut(s)	61, 253, 457, 523, 633, 768, 850, 933
SsiI	CCGC	9 cut(s)	7, 173, 182, 186, 195, 198, 377, 389, 404
SspDI	GGCGCC	1 cut(s)	409
SspMI	CTAG	1 cut(s)	1107
SstI	GAGCTC	2 cut(s)	677, 798
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	586, 621, 857
TaqI	TCGA	5 cut(s)	27, 77, 395, 623, 775
TasI	AATT	8 cut(s)	61, 253, 457, 523, 633, 768, 850, 933
TatI	WGTACW	2 cut(s)	464, 962
TauI	GCSGC	2 cut(s)	198, 201
TfiI	GAWTC	3 cut(s)	45, 538, 1042
Tru1I	TTAA	4 cut(s)	249, 336, 588, 932
Tru9I	TTAA	4 cut(s)	249, 336, 588, 932
TseI	GCWGC	5 cut(s)	208, 842, 944, 1110, 1130
TspDTI	ATGAA	8 cut(s)	218, 245, 503, 1034, 1086, 1130, 1135, 1178
TspGWI	ACGGA	2 cut(s)	43, 889
VpaK11BI	GGWCC	2 cut(s)	169, 785
XagI	CCTNNNNNAGG	1 cut(s)	1131
XapI	RAATTY	3 cut(s)	253, 457, 523
XceI	RCATGY	1 cut(s)	663
XspI	CTAG	1 cut(s)	1107
ZrmI	AGTACT	1 cut(s)	964
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.