MD15G1123400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
8935134 .. 8938433
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1123400.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGGTAGGAAGCAAATCCAAGTTTTCGATGATAGGAGTGATGGGTTTCTATCTGTTTGCAATTTGGGAAATTTGGGATTTCAATGGAGTCCCGAAGAGGGGGGTTGCCATCCCGGAGGCTTATTTGCAAGCGTTAGCCAAGTGGGGATGGGCTTCGGGGTCTCGCCGGACCCTCCCAATCCACGACGTGATGGCGGGGCCGTGAAGCTTCCGTATGCCGAGCAGTACATGAAGTATGTGGAGGGGATTAAGAGTTTTGGGGTTGGGGAAGAGAAAGAGGTGGTGAAGAATAAGAAGGGCGGACTTAAATTGAAGATTAAGATTGCTAACCCTTCACTGAGGAGGCTAATAAGTGGTGCAGTAGCCGGGGCAATTTCACGGACGGCTGTGGCGCCATTGGAGACGATAAGGACTCATTTGATGGTTGGGAATTGTGGGAAATCTACTACTGAGGTCTTCAATGATATAATGAAAATTGATGGGTGGAAGGGGTTGTTTAGGGGAAATCTAGTCAATGTGATTCGGGTTGCACCGAGCAAGGCGATAGAGCTGTTTGCTTATGATACGGTTAACAAGCAACTGTCACCAAAACCTGGAGAGGAGCCCATACTTCCAATTCCTGCCTCGTTAATTGCAGGTGCTTGTGCTGGAGTGAGCTCAACAATTTGCACATACCCTCTTGAGTTAATTAAGACGCGGCTAACCATTCAGAGAGACGCTTATGACGGTCTTCTGGATGCATTCTTAAAAATAGTGCGAGAAGAGGGACCGGCAGAACTCTACAGAGGTCTTGCCCCTAGTCTTATTGGAGTAATTCCATATGCTGCCACCAATTACTATGCTTATGATACATTACGGAAAGCCTATCGCAAGTTTCTCAAGCAGGAGAAGATCGGCAACATTGAAACCCTTTTAATTGGATCAGCAGCCGGTGCTATTTCAAGTACTGCGACATTCCCACTTGAGGTGGCACGCAAGCACATGCAGGCGGGAGCCGTGAATGGAACACAACATAGAAATATGCTTCACGCCCTCACCAGTATACTTGAGAAGCAGGGGGTTGAGGGTTTATACAAAGGGCTAGGCCCGAGCTGCATGAAGTTGGTGCCTGCGGCAGGGATTTCTTTTATGTGCTACGAAGCGTGCAAGCGGATACTGGTAGAGGAAAAAGAGGAAGAGTAG

Protein Analysis

394

Amino Acids

42.51

Weight (kDa)

9.01

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 111 - 195 2.3e-20 Mitochondrial carrier protein
Mito_carr PF00153 205 - 291 9.1e-25 Mitochondrial carrier protein
Mito_carr PF00153 300 - 389 2.9e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 626
AccB1I GGYRCC 2 cut(s) 391, 1105
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 1042
AccII CGCG 1 cut(s) 697
AciI CCGC 6 cut(s) 195, 300, 697, 989, 1112, 1150
AclWI GGATC 1 cut(s) 928
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 2 cut(s) 227, 946
AfiI CCNNNNNNNGG 5 cut(s) 98, 99, 593, 964, 1115
AgsI TTSAA 5 cut(s) 83, 313, 460, 905, 942
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 4 cut(s) 208, 550, 657, 1092
AluI AGCT 4 cut(s) 208, 550, 657, 1092
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 3 cut(s) 166, 395, 708
AlwI GGATC 1 cut(s) 928
Ama87I CYCGRG 1 cut(s) 1087
AoxI GGCC 2 cut(s) 198, 1084
ApeKI GCWGC 3 cut(s) 824, 926, 1092
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 4 cut(s) 169, 198, 767, 1085
AsuC2I CCSGG 2 cut(s) 114, 367
AsuHPI GGTGA 3 cut(s) 295, 576, 1027
AvaI CYCGRG 1 cut(s) 1087
AvaII GGWCC 2 cut(s) 169, 767
BanI GGYRCC 2 cut(s) 391, 1105
BanII GRGCYC 2 cut(s) 606, 659
BbsI GAAGAC 2 cut(s) 448, 722
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 3 cut(s) 811, 938, 1079
BccI CCATC 6 cut(s) 35, 117, 142, 185, 415, 473
BceAI ACGGC 3 cut(s) 185, 399, 980
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 1146
BcnI CCSGG 2 cut(s) 114, 367
BcoDI GTCTC 3 cut(s) 166, 395, 708
BfaI CTAG 3 cut(s) 509, 798, 1082
BfmI CTRYAG 1 cut(s) 781
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 626
BfuI GTATCC 1 cut(s) 1146
BisI GCNGC 5 cut(s) 698, 825, 927, 1093, 1113
BlsI GCNGC 5 cut(s) 699, 826, 928, 1094, 1114
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 3 cut(s) 114, 367, 594
Bme18I GGWCC 2 cut(s) 169, 767
BmeT110I CYCGRG 1 cut(s) 1087
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 4 cut(s) 169, 198, 767, 1085
BmiI GGNNCC 7 cut(s) 171, 199, 393, 603, 768, 994, 1107
BmrFI CCNGG 3 cut(s) 114, 367, 594
BmsI GCATC 1 cut(s) 727
BpiI GAAGAC 2 cut(s) 448, 722
BpmI CTGGAG 2 cut(s) 615, 669
BpuEI CTTGAG 4 cut(s) 701, 863, 983, 1067
BpuMI CCSGG 2 cut(s) 114, 367
BsaHI GRCGYC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 99, 593, 964, 1115
Bse118I RCCGGY 2 cut(s) 769, 929
Bse1I ACTGG 2 cut(s) 1038, 1161
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 3 cut(s) 109, 153, 742
BseLI CCNNNNNNNGG 5 cut(s) 98, 99, 593, 964, 1115
BseMII CTCAG 2 cut(s) 329, 441
BseNI ACTGG 2 cut(s) 1038, 1161
BseRI GAGGAG 2 cut(s) 355, 614
BseXI GCAGC 3 cut(s) 811, 938, 1079
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 697
BshFI GGCC 2 cut(s) 200, 1086
BshNI GGYRCC 2 cut(s) 391, 1105
BsiHKAI GWGCWC 1 cut(s) 659
BsiHKCI CYCGRG 1 cut(s) 1087
BsiSI CCGG 5 cut(s) 114, 167, 366, 770, 930
BslFI GGGAC 2 cut(s) 75, 780
BslI CCNNNNNNNGG 5 cut(s) 98, 99, 593, 964, 1115
BsmAI GTCTC 3 cut(s) 166, 395, 708
BsmBI CGTCTC 2 cut(s) 395, 708
BsmFI GGGAC 2 cut(s) 75, 780
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 2 cut(s) 200, 1086
Bso31I GGTCTC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 606, 659
Bsp143I GATC 2 cut(s) 891, 920
BspACI CCGC 6 cut(s) 195, 300, 697, 989, 1112, 1150
BspANI GGCC 2 cut(s) 200, 1086
BspCNI CTCAG 2 cut(s) 330, 442
BspFNI CGCG 1 cut(s) 697
BspLI GGNNCC 7 cut(s) 171, 199, 393, 603, 768, 994, 1107
BspMI ACCTGC 1 cut(s) 626
BspPI GGATC 1 cut(s) 928
BspT107I GGYRCC 2 cut(s) 391, 1105
BspTNI GGTCTC 1 cut(s) 166
BsrFI RCCGGY 2 cut(s) 769, 929
BsrI ACTGG 2 cut(s) 1038, 1161
BssAI RCCGGY 2 cut(s) 769, 929
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 891, 920
BssNAI GTATAC 1 cut(s) 1043
BssNI GRCGYC 1 cut(s) 392
Bst1107I GTATAC 1 cut(s) 1043
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 568, 582, 728
Bst6I CTCTTC 4 cut(s) 90, 264, 756, 1170
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 7 cut(s) 130, 973, 977, 987, 1110, 1144, 1148
BstDEI CTNAG 2 cut(s) 338, 450
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 3 cut(s) 109, 153, 742
BstFNI CGCG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 894, 923
BstMAI GTCTC 3 cut(s) 166, 395, 708
BstMBI GATC 2 cut(s) 891, 920
BstMWI GCNNNNNNNGC 2 cut(s) 932, 1092
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 985
BstSCI CCNGG 3 cut(s) 112, 365, 592
BstSFI CTRYAG 1 cut(s) 781
BstUI CGCG 1 cut(s) 697
BstV1I GCAGC 3 cut(s) 811, 938, 1079
BstV2I GAAGAC 2 cut(s) 448, 722
BstZ17I GTATAC 1 cut(s) 1043
BsuI GTATCC 1 cut(s) 1146
BsuRI GGCC 2 cut(s) 200, 1086
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 109, 153, 742
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 7 cut(s) 130, 973, 977, 987, 1110, 1144, 1148
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 2 cut(s) 769, 929
Cfr13I GGNCC 4 cut(s) 169, 198, 767, 1085
CseI GACGC 2 cut(s) 703, 725
Csp6I GTAC 2 cut(s) 226, 945
CviAII CATG 3 cut(s) 229, 982, 1096
CviQI GTAC 2 cut(s) 226, 945
DdeI CTNAG 2 cut(s) 338, 450
DinI GGCGCC 1 cut(s) 393
DpnI GATC 2 cut(s) 893, 922
DpnII GATC 2 cut(s) 891, 920
DraIII CACNNNGTG 1 cut(s) 188
Eam1104I CTCTTC 4 cut(s) 90, 264, 756, 1170
EarI CTCTTC 4 cut(s) 90, 264, 756, 1170
EciI GGCGGA 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 657
Eco24I GRGCYC 2 cut(s) 606, 659
Eco31I GGTCTC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 169, 767
Eco53kI GAGCTC 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 1087
EcoICRI GAGCTC 1 cut(s) 657
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoRII CCWGG 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 742
EcoT38I GRGCYC 2 cut(s) 606, 659
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
Esp3I CGTCTC 2 cut(s) 395, 708
FaeI CATG 3 cut(s) 232, 985, 1099
FaqI GGGAC 2 cut(s) 75, 780
FatI CATG 3 cut(s) 228, 981, 1095
FauI CCCGC 2 cut(s) 188, 982
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 5 cut(s) 698, 825, 927, 1093, 1113
FokI GGATG 3 cut(s) 96, 160, 749
FriOI GRGCYC 2 cut(s) 606, 659
Fsp4HI GCNGC 5 cut(s) 698, 825, 927, 1093, 1113
FspBI CTAG 3 cut(s) 509, 798, 1082
GlaI GCGC 1 cut(s) 393
GluI GCNGC 5 cut(s) 698, 825, 927, 1093, 1113
GsuI CTGGAG 2 cut(s) 615, 669
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 2 cut(s) 200, 1086
HapII CCGG 5 cut(s) 114, 167, 366, 770, 930
HgaI GACGC 2 cut(s) 703, 725
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 3 cut(s) 232, 985, 1099
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 3 cut(s) 88, 412, 520
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 5 cut(s) 114, 167, 366, 770, 930
HphI GGTGA 3 cut(s) 295, 576, 1027
Hpy166II GTNNAC 2 cut(s) 571, 1043
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 3 cut(s) 92, 680, 734
Hpy8I GTNNAC 2 cut(s) 571, 1043
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 289, 342, 481
HpyCH4III ACNGT 3 cut(s) 568, 582, 728
HpyCH4IV ACGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 932, 1092
HpyF3I CTNAG 2 cut(s) 338, 450
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 3 cut(s) 232, 985, 1099
HspAI GCGC 1 cut(s) 392
KasI GGCGCC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 891, 920
LmnI GCTCC 2 cut(s) 601, 992
Lsp1109I GCAGC 3 cut(s) 811, 938, 1079
LweI GCATC 1 cut(s) 727
MaeI CTAG 3 cut(s) 509, 798, 1082
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 582
MalI GATC 2 cut(s) 893, 922
MboI GATC 2 cut(s) 891, 920
MboII GAAGA 8 cut(s) 107, 281, 298, 325, 448, 722, 773, 901
MhlI GDGCHC 2 cut(s) 606, 659
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 2 cut(s) 97, 406
Mph1103I ATGCAT 1 cut(s) 742
MseI TTAA 9 cut(s) 249, 306, 318, 570, 629, 686, 690, 746, 914
MspI CCGG 5 cut(s) 114, 167, 366, 770, 930
MspR9I CCNGG 3 cut(s) 114, 367, 594
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 697
MwoI GCNNNNNNNGC 2 cut(s) 932, 1092
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 2 cut(s) 114, 367
NdeI CATATG 1 cut(s) 820
NdeII GATC 2 cut(s) 891, 920
NlaIII CATG 3 cut(s) 232, 985, 1099
NlaIV GGNNCC 7 cut(s) 171, 199, 393, 603, 768, 994, 1107
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 582
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 1 cut(s) 985
PacI TTAATTAA 1 cut(s) 690
PaqCI CACCTGC 1 cut(s) 626
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 5 cut(s) 699, 826, 928, 1094, 1114
PleI GAGTC 2 cut(s) 96, 406
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 2 cut(s) 96, 406
Psp124BI GAGCTC 1 cut(s) 659
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 7 cut(s) 171, 199, 393, 603, 768, 994, 1107
PspPI GGNCC 4 cut(s) 169, 198, 767, 1085
RsaI GTAC 2 cut(s) 227, 946
RsaNI GTAC 2 cut(s) 226, 945
SacI GAGCTC 1 cut(s) 659
SaqAI TTAA 9 cut(s) 249, 306, 318, 570, 629, 686, 690, 746, 914
SatI GCNGC 5 cut(s) 698, 825, 927, 1093, 1113
Sau3AI GATC 2 cut(s) 891, 920
Sau96I GGNCC 4 cut(s) 169, 198, 767, 1085
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 2 cut(s) 97, 406
ScrFI CCNGG 3 cut(s) 114, 367, 594
SduI GDGCHC 2 cut(s) 606, 659
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 1 cut(s) 781
SfoI GGCGCC 1 cut(s) 393
SinI GGWCC 2 cut(s) 169, 767
SmlI CTYRAG 4 cut(s) 680, 878, 962, 1046
SmoI CTYRAG 4 cut(s) 680, 878, 962, 1046
SsiI CCGC 6 cut(s) 195, 300, 697, 989, 1112, 1150
SspDI GGCGCC 1 cut(s) 391
SspMI CTAG 3 cut(s) 509, 798, 1082
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 3 cut(s) 112, 365, 592
TaaI ACNGT 3 cut(s) 568, 582, 728
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 27
TatI WGTACW 2 cut(s) 225, 944
TauI GCSGC 2 cut(s) 700, 1115
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 9 cut(s) 249, 306, 318, 570, 629, 686, 690, 746, 914
Tru9I TTAA 9 cut(s) 249, 306, 318, 570, 629, 686, 690, 746, 914
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 3 cut(s) 824, 926, 1092
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 3 cut(s) 245, 485, 1112
TspGWI ACGGA 3 cut(s) 201, 394, 871
TspRI CASTG 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 169, 767
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 985
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 3 cut(s) 509, 798, 1082
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.