MD08G1147400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
14859334 .. 14862604
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1147400.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGTTAGGAAGCAAATTCAAGTTTTCGATGATAAGAGTGATGGGTTTCTCTCTGTTGGCAATTTGGGAAATTTGGGATTTCAATGGAGTCCCCAAGAGGGGGGTTACCATCCCGGAGGCTTATTTGCAAGCGTTAGCCAAGTGGGGGTGGGGTTTGGGGTCTCGCCGGACCCTCCCAATCCACGCAGTGATGGTGGGGCCGTGAAGCTTCCGTATGCCGAGCAGTACATGAAGTATGTGGAGGGGATTAAGAATTTTGGGGTTGGGGAAGAGAAAGGGGTGGTGAAGAATAAGAAGGGTGGTCTCAAATTGAAGATTAAGATTGCAAACCCTTCACTGAGGAGACTAATAAGTGGTGCAGTAGCCGGGGCAGTTTCACGCACGGCTGTGGCGCCCTTGGAGACGATAAGGACGCATTTGATGGTCGGGAGTAGTGGGCATTCTACTACTGAGGTGTTCAATAATATAATGAAGACTGATGGGTGGAAGGGGTTGTTTAGAGGAAATCTAGTCAATGTGATTCGGGTTGCACCGAGCAAGGCGATAGAGCTGTTTGCTTATGATACGGTTAACAAGCAACTGCAACCAAAACCTGGAGAGCAGCCCAAACTTCCAATTCCTGCCTCATTAATTGCAGGTGCTTGTGCTGGAGTGAGCTCGACAATTTGCACATACCCTCTTGAGTTACTTAAGACGCGGCTAACCATTCAGAGAGGCGTTTATGATGGCCTTTTGGATGCATTCTTAAAAATAGTGCGAGAAGAGGGACCGGGAGAGCTTTACAGAGGTCTTGCCCCTAGTCTTATTGGAGTAATTCCATATGCTGCCACCAATTACTTTGCTTATGATACTTTACGGAAAGCCTATCGCAAGTTTCTCAAACAGGAGAAGATTGGAAACATTGAAACCCTTTTAATTGGATCAGCAGCCGGTGCTATTTCAAGTACTGCAACTTTCCCACTTGAAGTGGCACGCAAACAGATGCAGGTAGGAGCCCTCGGTGGGAGGCAGTATACGAATGTGCTTCACGCCCTCGCCAGTATACTTGAGCATGAGGGGGTTCAGGGTTTATACAAGGGGCTAGGGCCGAGCTGCATGAAGTTGGTGCCTGCAGCAGGGATTTCATTCATGTGCTACGAAGCATGCAAGAGGATACTGGTAGAAGGAAAAGAGGAAGAATAG

Protein Analysis

394

Amino Acids

42.2

Weight (kDa)

9.38

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 111 - 196 5.8e-22 Mitochondrial carrier protein
Mito_carr PF00153 204 - 291 1.1e-24 Mitochondrial carrier protein
Mito_carr PF00153 300 - 388 2.8e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 2 cut(s) 626, 976
AccB1I GGYRCC 2 cut(s) 391, 1105
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 2 cut(s) 1013, 1042
AccII CGCG 1 cut(s) 697
AciI CCGC 1 cut(s) 697
AclWI GGATC 1 cut(s) 928
AcsI RAATTY 3 cut(s) 15, 70, 253
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 2 cut(s) 227, 946
AfiI CCNNNNNNNGG 7 cut(s) 98, 99, 100, 145, 593, 1002, 1115
AflII CTTAAG 1 cut(s) 689
AgsI TTSAA 7 cut(s) 20, 83, 313, 460, 905, 942, 965
AjnI CCWGG 1 cut(s) 592
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 5 cut(s) 208, 550, 657, 778, 1092
AluI AGCT 5 cut(s) 208, 550, 657, 778, 1092
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 4 cut(s) 166, 308, 337, 395
AlwI GGATC 1 cut(s) 928
AoxI GGCC 3 cut(s) 198, 727, 1085
ApeKI GCWGC 5 cut(s) 601, 824, 926, 1092, 1112
ApoI RAATTY 3 cut(s) 15, 70, 253
AseI ATTAAT 1 cut(s) 629
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 4 cut(s) 169, 198, 767, 1085
AsuC2I CCSGG 3 cut(s) 114, 367, 771
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 2 cut(s) 169, 767
BanI GGYRCC 2 cut(s) 391, 1105
BanII GRGCYC 2 cut(s) 659, 997
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 5 cut(s) 613, 811, 938, 1079, 1124
BccI CCATC 6 cut(s) 35, 117, 185, 415, 473, 719
BceAI ACGGC 2 cut(s) 185, 399
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 1146
BcnI CCSGG 3 cut(s) 114, 367, 771
BcoDI GTCTC 4 cut(s) 166, 308, 337, 395
BfaI CTAG 3 cut(s) 509, 798, 1082
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 395
BfrI CTTAAG 1 cut(s) 689
BfuAI ACCTGC 2 cut(s) 626, 976
BfuI GTATCC 1 cut(s) 1146
BisI GCNGC 6 cut(s) 602, 698, 825, 927, 1093, 1113
BlsI GCNGC 6 cut(s) 603, 699, 826, 928, 1094, 1114
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 4 cut(s) 114, 367, 594, 771
Bme18I GGWCC 2 cut(s) 169, 767
BmgT120I GGNCC 4 cut(s) 169, 198, 767, 1085
BmiI GGNNCC 6 cut(s) 171, 199, 393, 768, 994, 1107
BmrFI CCNGG 4 cut(s) 114, 367, 594, 771
BmsI GCATC 2 cut(s) 727, 972
BpiI GAAGAC 1 cut(s) 479
BpmI CTGGAG 2 cut(s) 615, 669
BpuEI CTTGAG 2 cut(s) 701, 1067
BpuMI CCSGG 3 cut(s) 114, 367, 771
BsaHI GRCGYC 1 cut(s) 392
BsaI GGTCTC 2 cut(s) 166, 308
BsaJI CCNNGG 3 cut(s) 366, 396, 997
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 99, 100, 145, 593, 1002, 1115
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 2 cut(s) 1038, 1161
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 3 cut(s) 366, 396, 997
BseGI GGATG 2 cut(s) 109, 742
BseLI CCNNNNNNNGG 7 cut(s) 98, 99, 100, 145, 593, 1002, 1115
BseMII CTCAG 2 cut(s) 329, 441
BseNI ACTGG 2 cut(s) 1038, 1161
BseRI GAGGAG 1 cut(s) 355
BseXI GCAGC 5 cut(s) 613, 811, 938, 1079, 1124
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 697
BshFI GGCC 3 cut(s) 200, 729, 1087
BshNI GGYRCC 2 cut(s) 391, 1105
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 5 cut(s) 114, 167, 366, 770, 930
BslFI GGGAC 2 cut(s) 75, 780
BslI CCNNNNNNNGG 7 cut(s) 98, 99, 100, 145, 593, 1002, 1115
BsmAI GTCTC 4 cut(s) 166, 308, 337, 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 75, 780
BsmI GAATGC 2 cut(s) 439, 740
BsnI GGCC 3 cut(s) 200, 729, 1087
Bso31I GGTCTC 2 cut(s) 166, 308
Bsp1286I GDGCHC 2 cut(s) 659, 997
Bsp143I GATC 1 cut(s) 920
BspACI CCGC 1 cut(s) 697
BspANI GGCC 3 cut(s) 200, 729, 1087
BspCNI CTCAG 2 cut(s) 330, 442
BspFNI CGCG 1 cut(s) 697
BspLI GGNNCC 6 cut(s) 171, 199, 393, 768, 994, 1107
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 2 cut(s) 626, 976
BspPI GGATC 1 cut(s) 928
BspT107I GGYRCC 2 cut(s) 391, 1105
BspTI CTTAAG 1 cut(s) 689
BspTNI GGTCTC 2 cut(s) 166, 308
BsrFI RCCGGY 1 cut(s) 929
BsrI ACTGG 2 cut(s) 1038, 1161
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 3 cut(s) 366, 396, 997
BssMI GATC 1 cut(s) 920
BssNAI GTATAC 2 cut(s) 1014, 1043
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 396
Bst1107I GTATAC 2 cut(s) 1014, 1043
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 2 cut(s) 264, 756
BstACI GRCGYC 1 cut(s) 392
BstAFI CTTAAG 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 4 cut(s) 130, 973, 1110, 1144
BstDEI CTNAG 2 cut(s) 338, 450
BstEII GGTNACC 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 2 cut(s) 109, 742
BstFNI CGCG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 923
BstMAI GTCTC 4 cut(s) 166, 308, 337, 395
BstMBI GATC 1 cut(s) 920
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 1146
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 4 cut(s) 112, 365, 592, 769
BstSFI CTRYAG 1 cut(s) 1110
BstUI CGCG 1 cut(s) 697
BstV1I GCAGC 5 cut(s) 613, 811, 938, 1079, 1124
BstV2I GAAGAC 1 cut(s) 479
BstZ17I GTATAC 2 cut(s) 1014, 1043
BsuI GTATCC 1 cut(s) 1146
BsuRI GGCC 3 cut(s) 200, 729, 1087
BtsCI GGATG 2 cut(s) 109, 742
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 193, 335
BveI ACCTGC 2 cut(s) 626, 976
Cac8I GCNNGC 4 cut(s) 130, 973, 1110, 1144
CfoI GCGC 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 4 cut(s) 169, 198, 767, 1085
CseI GACGC 2 cut(s) 421, 703
Csp6I GTAC 2 cut(s) 226, 945
CviAII CATG 5 cut(s) 229, 1052, 1096, 1129, 1143
CviQI GTAC 2 cut(s) 226, 945
DdeI CTNAG 2 cut(s) 338, 450
DinI GGCGCC 1 cut(s) 393
DpnI GATC 1 cut(s) 922
DpnII GATC 1 cut(s) 920
DraIII CACNNNGTG 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 264, 756
EarI CTCTTC 2 cut(s) 264, 756
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 2 cut(s) 659, 997
Eco31I GGTCTC 2 cut(s) 166, 308
Eco47I GGWCC 2 cut(s) 169, 767
Eco53kI GAGCTC 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 657
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoO65I GGTNACC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 742
EcoT38I GRGCYC 2 cut(s) 659, 997
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 5 cut(s) 232, 1055, 1099, 1132, 1146
FaqI GGGAC 2 cut(s) 75, 780
FatI CATG 5 cut(s) 228, 1051, 1095, 1128, 1142
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 2 cut(s) 1013, 1042
Fnu4HI GCNGC 6 cut(s) 602, 698, 825, 927, 1093, 1113
FokI GGATG 2 cut(s) 96, 749
FriOI GRGCYC 2 cut(s) 659, 997
Fsp4HI GCNGC 6 cut(s) 602, 698, 825, 927, 1093, 1113
FspBI CTAG 3 cut(s) 509, 798, 1082
GlaI GCGC 1 cut(s) 393
GluI GCNGC 6 cut(s) 602, 698, 825, 927, 1093, 1113
GsuI CTGGAG 2 cut(s) 615, 669
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 3 cut(s) 200, 729, 1087
HapII CCGG 5 cut(s) 114, 167, 366, 770, 930
HgaI GACGC 2 cut(s) 421, 703
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 5 cut(s) 232, 1055, 1099, 1132, 1146
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 88, 520
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 5 cut(s) 114, 167, 366, 770, 930
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 3 cut(s) 571, 1014, 1043
Hpy188I TCNGA 1 cut(s) 711
Hpy188III TCNNGA 2 cut(s) 427, 680
Hpy8I GTNNAC 3 cut(s) 571, 1014, 1043
HpyAV CCTTC 4 cut(s) 289, 342, 481, 1157
HpyCH4III ACNGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 2 cut(s) 338, 450
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 5 cut(s) 232, 1055, 1099, 1132, 1146
HspAI GCGC 1 cut(s) 392
KasI GGCGCC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 1 cut(s) 920
LmnI GCTCC 1 cut(s) 992
Lsp1109I GCAGC 5 cut(s) 613, 811, 938, 1079, 1124
LweI GCATC 2 cut(s) 727, 972
MaeI CTAG 3 cut(s) 509, 798, 1082
MaeIII GTNAC 2 cut(s) 104, 684
MalI GATC 1 cut(s) 922
MboI GATC 1 cut(s) 920
MboII GAAGA 6 cut(s) 281, 298, 325, 484, 773, 901
MhlI GDGCHC 2 cut(s) 659, 997
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 742
MseI TTAA 7 cut(s) 249, 318, 570, 629, 690, 746, 914
MslI CAYNNNNRTG 2 cut(s) 386, 1129
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 5 cut(s) 114, 167, 366, 770, 930
MspR9I CCNGG 4 cut(s) 114, 367, 594, 771
Mva1269I GAATGC 2 cut(s) 439, 740
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 697
MwoI GCNNNNNNNGC 1 cut(s) 932
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 3 cut(s) 114, 367, 771
NdeI CATATG 1 cut(s) 820
NdeII GATC 1 cut(s) 920
NlaIII CATG 5 cut(s) 232, 1055, 1099, 1132, 1146
NlaIV GGNNCC 6 cut(s) 171, 199, 393, 768, 994, 1107
NmeAIII GCCGAG 2 cut(s) 244, 1113
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 1 cut(s) 1146
OliI CACNNNNGTG 1 cut(s) 386
PaeI GCATGC 1 cut(s) 1146
PaqCI CACCTGC 1 cut(s) 626
PctI GAATGC 2 cut(s) 439, 740
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 6 cut(s) 603, 699, 826, 928, 1094, 1114
PleI GAGTC 1 cut(s) 96
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 659
Psp6I CCWGG 1 cut(s) 592
PspEI GGTNACC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 6 cut(s) 171, 199, 393, 768, 994, 1107
PspPI GGNCC 4 cut(s) 169, 198, 767, 1085
PstI CTGCAG 1 cut(s) 1114
RsaI GTAC 2 cut(s) 227, 946
RsaNI GTAC 2 cut(s) 226, 945
RseI CAYNNNNRTG 2 cut(s) 386, 1129
SacI GAGCTC 1 cut(s) 659
SaqAI TTAA 7 cut(s) 249, 318, 570, 629, 690, 746, 914
SatI GCNGC 6 cut(s) 602, 698, 825, 927, 1093, 1113
Sau3AI GATC 1 cut(s) 920
Sau96I GGNCC 4 cut(s) 169, 198, 767, 1085
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 4 cut(s) 114, 367, 594, 771
SduI GDGCHC 2 cut(s) 659, 997
SfaNI GCATC 2 cut(s) 727, 972
SfcI CTRYAG 1 cut(s) 1110
SfoI GGCGCC 1 cut(s) 393
SinI GGWCC 2 cut(s) 169, 767
SmiMI CAYNNNNRTG 2 cut(s) 386, 1129
SmlI CTYRAG 3 cut(s) 680, 689, 1046
SmoI CTYRAG 3 cut(s) 680, 689, 1046
SphI GCATGC 1 cut(s) 1146
SsiI CCGC 1 cut(s) 697
SspDI GGCGCC 1 cut(s) 391
SspMI CTAG 3 cut(s) 509, 798, 1082
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 4 cut(s) 112, 365, 592, 769
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 568
TaqI TCGA 2 cut(s) 27, 659
TatI WGTACW 2 cut(s) 225, 944
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 7 cut(s) 249, 318, 570, 629, 690, 746, 914
Tru9I TTAA 7 cut(s) 249, 318, 570, 629, 690, 746, 914
TscAI CASTG 2 cut(s) 193, 342
TseI GCWGC 5 cut(s) 601, 824, 926, 1092, 1112
TspDTI ATGAA 5 cut(s) 245, 485, 1112, 1113, 1117
TspGWI ACGGA 2 cut(s) 201, 871
TspRI CASTG 2 cut(s) 193, 342
Van91I CCANNNNNTGG 1 cut(s) 593
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 169, 767
VspI ATTAAT 1 cut(s) 629
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 3 cut(s) 15, 70, 253
XceI RCATGY 1 cut(s) 1146
XmiI GTMKAC 2 cut(s) 1013, 1042
XspI CTAG 3 cut(s) 509, 798, 1082
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.