Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Forward (+)

62581906 .. 62585146

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG398100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGCGGAGAGATGTTCAGGTTTTCGATGACAGGAGCGATGGATTCTTCTCCGTTTGCAATTTGGGGTTTCAATCGAGTCCCCAACAGGTGCAGTATCCCCACGCCGGAGGCTTATTCGCCAGCGTTTCCCAAGTCGGAATGGGGTTCGGAGTCTCGCCAACGCCGGAACCGCAAAACCCGCGCGGCGACGGTGGCGGCATGAAGCTGCCGTACGCCGACCTGTACATGAAGTATGTGGAGGGCATTAAGAATTTTGGGGCCAAGGAGGAGGAGATAGTAGAAGGGGTGGTGAAGAAGAAGAAGGGTGGTCTCAAGTTGAAGATTAAGATTGCTAATCCTTCTCTGAGGAGGTTGATTAGTGGTGCGGTGGCCGGAGCGGTGTCGAGGACGGCGGTGGCGCCGTTGGAGACTATAAGGACGCATTTGATGGTTGGGAGTAGTGGGAATTCCACTACTGAGGTGTTTACTGATATTATGAAGGTGGATGGGTGGACGGGATTGTTTAGGGGGAATTTGGTCAATGTGATTCGGGTTGCGCCGAGCAAGGCAATAGAGCTGTTTGCTTATGATACAGTTAATAAGCACCTGTCGCCCAAAGCTGGAGAACAGTCGAAACTTCCAATTCCTGCCTCATTAGTTGCAGGTGCCTGTGCTGGAGTGAGCTCCACACTTATCACATACCCCCTTGAGTTACTAAAAACTCGGCTAACCATTCAGAGAGGCGTATATAATGGCCTTCTTGATGCATTTGTAAAAATTATTCGAGAAGAGGGACCTGCAGAGCTCTATAGAGGTCTTGCACCCAGTCTTATTGGAGTCATTCCTTATGCTGCCACAAATTACTGTGCTTATGACACATTACGGAAAGCCTATCGTAAGATTTTCAAGCAGGAGAAGATTGGGAACATTCAGACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGTACCGCAACTTTCCCTCTTGAAGTAGCTCGCAAACATATGCAGGTGGGGGCCGTGGGTGGAAGGCAGTATAATGATGTGATTCATGCCCTCGCAAGCATACTTGAACATGAAGGTATTGCTGGTTTATACAGAGGGCTCGGGCCTAGCTGCATGAAGTTGGTGCCTGCAGCAGGGATTTCTTTCATGTGCTACGAAGCAATGAAGAAGATACTGGTAGAGGATGATGAGGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

396

Amino Acids

42.52

Weight (kDa)

9.15

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	114 - 198	2.3e-21	Mitochondrial carrier protein
Mito_carr	PF00153	206 - 294	1.1e-24	Mitochondrial carrier protein
Mito_carr	PF00153	302 - 391	2e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	635, 985
Acc36I	ACCTGC	3 cut(s)	635, 787, 985
AccB1I	GGYRCC	3 cut(s)	400, 647, 1114
AccBSI	CCGCTC	1 cut(s)	380
AccII	CGCG	2 cut(s)	184, 186
AciI	CCGC	9 cut(s)	7, 173, 182, 186, 198, 368, 380, 395, 957
AclWI	GGATC	1 cut(s)	937
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	3 cut(s)	253, 448, 514
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	215, 227, 955
AfiI	CCNNNNNNNGG	3 cut(s)	107, 602, 1124
AgsI	TTSAA	6 cut(s)	74, 322, 889, 951, 974, 1058
AluBI	AGCT	8 cut(s)	208, 559, 602, 666, 787, 938, 980, 1101
AluI	AGCT	8 cut(s)	208, 559, 602, 666, 787, 938, 980, 1101
Alw21I	GWGCWC	2 cut(s)	668, 789
Alw26I	GTCTC	3 cut(s)	160, 317, 404
AlwI	GGATC	1 cut(s)	937
AlwNI	CAGNNNCTG	1 cut(s)	938
Ama87I	CYCGRG	1 cut(s)	1091
AoxI	GGCC	5 cut(s)	261, 372, 736, 1002, 1094
ApeKI	GCWGC	5 cut(s)	208, 833, 935, 1101, 1121
ApoI	RAATTY	3 cut(s)	253, 448, 514
AspLEI	GCGC	3 cut(s)	186, 403, 541
AspS9I	GGNCC	4 cut(s)	261, 776, 1002, 1094
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	776
BanI	GGYRCC	3 cut(s)	400, 647, 1114
BanII	GRGCYC	3 cut(s)	668, 789, 1092
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	2 cut(s)	668, 789
BbvI	GCAGC	5 cut(s)	195, 820, 947, 1088, 1133
BccI	CCATC	3 cut(s)	35, 424, 482
BceAI	ACGGC	4 cut(s)	196, 388, 408, 989
BciVI	GTATCC	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	160, 317, 404
BfaI	CTAG	1 cut(s)	1098
BfmI	CTRYAG	3 cut(s)	780, 790, 1119
BfoI	RGCGCY	1 cut(s)	404
BfuAI	ACCTGC	3 cut(s)	635, 787, 985
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	7 cut(s)	187, 199, 209, 834, 936, 1102, 1122
BlsI	GCNGC	7 cut(s)	188, 200, 210, 835, 937, 1103, 1123
Bme18I	GGWCC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	4 cut(s)	261, 776, 1002, 1094
BmiI	GGNNCC	7 cut(s)	171, 262, 402, 649, 777, 1003, 1116
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	1 cut(s)	736
BmuI	ACTGGG	1 cut(s)	801
BpmI	CTGGAG	2 cut(s)	624, 678
BpuEI	CTTGAG	2 cut(s)	299, 710
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	264, 1005
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 602, 1124
Bse1I	ACTGG	2 cut(s)	807, 1170
Bse3DI	GCAATG	1 cut(s)	1158
BseDI	CCNNGG	2 cut(s)	264, 1005
BseGI	GGATG	2 cut(s)	493, 1180
BseLI	CCNNNNNNNGG	3 cut(s)	107, 602, 1124
BseMI	GCAATG	1 cut(s)	1158
BseMII	CTCAG	2 cut(s)	338, 450
BseNI	ACTGG	2 cut(s)	807, 1170
BseRI	GAGGAG	3 cut(s)	284, 287, 364
BseXI	GCAGC	5 cut(s)	195, 820, 947, 1088, 1133
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	184, 186
BshFI	GGCC	5 cut(s)	263, 374, 738, 1004, 1096
BshNI	GGYRCC	3 cut(s)	400, 647, 1114
BsiHKAI	GWGCWC	2 cut(s)	668, 789
BsiHKCI	CYCGRG	1 cut(s)	1091
BsiSI	CCGG	3 cut(s)	108, 167, 375
BsiWI	CGTACG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	66, 789
BslI	CCNNNNNNNGG	3 cut(s)	107, 602, 1124
BsmAI	GTCTC	3 cut(s)	160, 317, 404
BsmFI	GGGAC	2 cut(s)	66, 789
BsnI	GGCC	5 cut(s)	263, 374, 738, 1004, 1096
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	1091
Bsp1286I	GDGCHC	3 cut(s)	668, 789, 1092
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	929
BspACI	CCGC	9 cut(s)	7, 173, 182, 186, 198, 368, 380, 395, 957
BspANI	GGCC	5 cut(s)	263, 374, 738, 1004, 1096
BspCNI	CTCAG	2 cut(s)	339, 451
BspFNI	CGCG	2 cut(s)	184, 186
BspLI	GGNNCC	7 cut(s)	171, 262, 402, 649, 777, 1003, 1116
BspMAI	CTGCAG	2 cut(s)	784, 1123
BspMI	ACCTGC	3 cut(s)	635, 787, 985
BspPI	GGATC	1 cut(s)	937
BspT107I	GGYRCC	3 cut(s)	400, 647, 1114
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	1158
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	807, 1170
BssECI	CCNNGG	2 cut(s)	264, 1005
BssMI	GATC	1 cut(s)	929
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	4 cut(s)	194, 577, 612, 848
Bst6I	CTCTTC	1 cut(s)	765
BstACI	GRCGYC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	4 cut(s)	124, 982, 1048, 1119
BstDEI	CTNAG	2 cut(s)	347, 459
BstDSI	CCRYGG	1 cut(s)	1005
BstENI	CCTNNNNNAGG	1 cut(s)	1122
BstF5I	GGATG	2 cut(s)	493, 1180
BstFNI	CGCG	2 cut(s)	184, 186
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	3 cut(s)	186, 403, 541
BstKTI	GATC	1 cut(s)	932
BstMAI	GTCTC	3 cut(s)	160, 317, 404
BstMBI	GATC	1 cut(s)	929
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 181, 195, 592, 941
BstSFI	CTRYAG	3 cut(s)	780, 790, 1119
BstUI	CGCG	2 cut(s)	184, 186
BstV1I	GCAGC	5 cut(s)	195, 820, 947, 1088, 1133
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	5 cut(s)	263, 374, 738, 1004, 1096
BtgI	CCRYGG	1 cut(s)	1005
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	493, 1180
BveI	ACCTGC	3 cut(s)	635, 787, 985
Cac8I	GCNNGC	4 cut(s)	124, 982, 1048, 1119
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	3 cut(s)	186, 403, 541
Cfr13I	GGNCC	4 cut(s)	261, 776, 1002, 1094
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	214, 226, 954
CviAII	CATG	6 cut(s)	202, 229, 1037, 1061, 1105, 1138
CviQI	GTAC	3 cut(s)	214, 226, 954
DdeI	CTNAG	2 cut(s)	347, 459
DinI	GGCGCC	1 cut(s)	402
DpnI	GATC	1 cut(s)	931
DpnII	GATC	1 cut(s)	929
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	2 cut(s)	666, 787
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	3 cut(s)	668, 789, 1092
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	776
Eco53kI	GAGCTC	2 cut(s)	666, 787
Eco88I	CYCGRG	1 cut(s)	1091
EcoICRI	GAGCTC	2 cut(s)	666, 787
EcoNI	CCTNNNNNAGG	1 cut(s)	1122
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRI	GAATTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	3 cut(s)	668, 789, 1092
EgeI	GGCGCC	1 cut(s)	402
EheI	GGCGCC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	205, 232, 1040, 1064, 1108, 1141
FaqI	GGGAC	2 cut(s)	66, 789
FatI	CATG	6 cut(s)	201, 228, 1036, 1060, 1104, 1137
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	990
Fnu4HI	GCNGC	7 cut(s)	187, 199, 209, 834, 936, 1102, 1122
FokI	GGATG	2 cut(s)	500, 1187
FriOI	GRGCYC	3 cut(s)	668, 789, 1092
Fsp4HI	GCNGC	7 cut(s)	187, 199, 209, 834, 936, 1102, 1122
FspBI	CTAG	1 cut(s)	1098
GlaI	GCGC	3 cut(s)	185, 402, 540
GluI	GCNGC	7 cut(s)	187, 199, 209, 834, 936, 1102, 1122
GsuI	CTGGAG	2 cut(s)	624, 678
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	5 cut(s)	263, 374, 738, 1004, 1096
HapII	CCGG	3 cut(s)	108, 167, 375
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	3 cut(s)	186, 403, 541
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	6 cut(s)	205, 232, 1040, 1064, 1108, 1141
Hin6I	GCGC	3 cut(s)	184, 401, 539
HinP1I	GCGC	3 cut(s)	184, 401, 539
HinfI	GANTC	6 cut(s)	45, 79, 153, 529, 819, 1033
HpaII	CCGG	3 cut(s)	108, 167, 375
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	468, 495
Hpy188I	TCNGA	5 cut(s)	140, 152, 348, 720, 915
Hpy188III	TCNNGA	3 cut(s)	743, 767, 971
Hpy8I	GTNNAC	2 cut(s)	468, 495
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	7 cut(s)	278, 298, 351, 475, 749, 1008, 1058
HpyCH4III	ACNGT	4 cut(s)	194, 577, 612, 848
HpyCH4V	TGCA	9 cut(s)	60, 94, 644, 749, 782, 803, 994, 1104, 1121
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 181, 195, 592, 941
HpyF3I	CTNAG	2 cut(s)	347, 459
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	205, 232, 1040, 1064, 1108, 1141
HspAI	GCGC	3 cut(s)	184, 401, 539
KasI	GGCGCC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	929
LmnI	GCTCC	3 cut(s)	36, 377, 671
Lsp1109I	GCAGC	5 cut(s)	195, 820, 947, 1088, 1133
LweI	GCATC	1 cut(s)	736
MaeI	CTAG	1 cut(s)	1098
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	1 cut(s)	931
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	1 cut(s)	929
MboII	GAAGA	9 cut(s)	40, 307, 310, 313, 334, 782, 910, 1168, 1171
MhlI	GDGCHC	3 cut(s)	668, 789, 1092
MluCI	AATT	8 cut(s)	61, 253, 448, 514, 624, 759, 841, 924
Mly113I	GGCGCC	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	88, 162, 828
MmeI	TCCRAC	2 cut(s)	118, 387
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	4 cut(s)	249, 327, 579, 923
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	3 cut(s)	108, 167, 375
MvnI	CGCG	2 cut(s)	184, 186
MwoI	GCNNNNNNNGC	5 cut(s)	172, 181, 195, 592, 941
NarI	GGCGCC	1 cut(s)	401
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	1 cut(s)	929
NlaIII	CATG	6 cut(s)	205, 232, 1040, 1064, 1108, 1141
NlaIV	GGNNCC	7 cut(s)	171, 262, 402, 649, 777, 1003, 1116
NmeAIII	GCCGAG	2 cut(s)	567, 685
NsiI	ATGCAT	1 cut(s)	751
PaqCI	CACCTGC	2 cut(s)	635, 985
PfeI	GAWTC	3 cut(s)	45, 529, 1033
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	7 cut(s)	188, 200, 210, 835, 937, 1103, 1123
PleI	GAGTC	3 cut(s)	87, 161, 827
PluTI	GGCGCC	1 cut(s)	404
PpsI	GAGTC	3 cut(s)	87, 161, 827
PpuMI	RGGWCCY	1 cut(s)	776
Psp124BI	GAGCTC	2 cut(s)	668, 789
Psp5II	RGGWCCY	1 cut(s)	776
PspLI	CGTACG	1 cut(s)	213
PspN4I	GGNNCC	7 cut(s)	171, 262, 402, 649, 777, 1003, 1116
PspPI	GGNCC	4 cut(s)	261, 776, 1002, 1094
PspPPI	RGGWCCY	1 cut(s)	776
PstI	CTGCAG	2 cut(s)	784, 1123
PstNI	CAGNNNCTG	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	3 cut(s)	215, 227, 955
RsaNI	GTAC	3 cut(s)	214, 226, 954
SacI	GAGCTC	2 cut(s)	668, 789
SaqAI	TTAA	4 cut(s)	249, 327, 579, 923
SatI	GCNGC	7 cut(s)	187, 199, 209, 834, 936, 1102, 1122
Sau3AI	GATC	1 cut(s)	929
Sau96I	GGNCC	4 cut(s)	261, 776, 1002, 1094
SchI	GAGTC	3 cut(s)	88, 162, 828
SduI	GDGCHC	3 cut(s)	668, 789, 1092
SfaNI	GCATC	1 cut(s)	736
SfcI	CTRYAG	3 cut(s)	780, 790, 1119
SfoI	GGCGCC	1 cut(s)	402
SinI	GGWCC	1 cut(s)	776
SmlI	CTYRAG	2 cut(s)	314, 689
SmoI	CTYRAG	2 cut(s)	314, 689
Sse9I	AATT	8 cut(s)	61, 253, 448, 514, 624, 759, 841, 924
SsiI	CCGC	9 cut(s)	7, 173, 182, 186, 198, 368, 380, 395, 957
SspDI	GGCGCC	1 cut(s)	400
SspMI	CTAG	1 cut(s)	1098
SstI	GAGCTC	2 cut(s)	668, 789
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	194, 577, 612, 848
TaqI	TCGA	5 cut(s)	27, 77, 386, 614, 766
TasI	AATT	8 cut(s)	61, 253, 448, 514, 624, 759, 841, 924
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	2 cut(s)	189, 201
TfiI	GAWTC	3 cut(s)	45, 529, 1033
Tru1I	TTAA	4 cut(s)	249, 327, 579, 923
Tru9I	TTAA	4 cut(s)	249, 327, 579, 923
TseI	GCWGC	5 cut(s)	208, 833, 935, 1101, 1121
TspDTI	ATGAA	8 cut(s)	218, 245, 494, 1025, 1077, 1121, 1126, 1169
TspGWI	ACGGA	2 cut(s)	43, 880
VpaK11BI	GGWCC	1 cut(s)	776
XagI	CCTNNNNNAGG	1 cut(s)	1122
XapI	RAATTY	3 cut(s)	253, 448, 514
XspI	CTAG	1 cut(s)	1098
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.