FvH4_2g29400

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22814841 .. 22817916
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29400.t1

Sequence Viewer

Length: 1203 bp
ATGGGCCGGAGAGATGTTCAGGTTTTCGACGACCGGAGCGACGGTTTCTTCTCCGTCTGCAACTTGGGGTTCCAATCGAGTCCCCAACCCGTGCAATATCCCCACGCCGGAGGGTTATTCGCGAGCGTTTCGCAAGTCGGAATGGGGTTCGGAGTTTCTCCGACGCCGGAGCCGCAGAACCCGCGCGGCGACGGCGGCGGCGGGATGAAGCTGCCGTACGCCGACCTGTATATGAAGTATGTGGAGGGGATTAAGAATTTTGGGGCCAAGGAGGAGGAGGAGGTGGTAGAAGGGGTAGGGGTGGTGAAGAAGAAGAAGGGTGGGCTGAAGCTGAAGATTAAGATTGCTAATCCTTCGTTGAGGAGGTTGATTAGTGGCGCGGTGGCCGGAGCGGTGTCGAGGACGGCGGTGGCGCCGTTGGAGACTATAAGGACGCATTTGATGGTTGGGAGTAGTGGGAATTCGAGTACTGAGGTGTTTAATGATATTATGAAGGTTGATGGGTGGACGGGGTTGTTTAGGGGGAATTTGGTCAATGTGATTCGGGTTGCGCCGAGCAAGGCTATAGAGCTGTTTGCTTATGACACAGTTAACAAGCACTTGTCTCCCAAAGATGGAGAACAGTCCAAACTTCCAATTCCGGCCTCATTAATTGCAGGTGCCTGTGCTGGAGTGAGCTCTACTCTTGTCACATATCCCCTTGAATTACTTAAGACTCGGCTAACCATTCAGAGAGGCGTATATAACGGCCTTCTCGATGCATTTGTAAAAATTGTGCGAGAAGAGGGACCTGCAGAGCTTTATAGAGGTCTTGCCCCCAGTCTTATTGGAGTCATTCCATATGCTGCAACAAATTACTGTGCTTATGACACATTGCGGAAAGCCTATCGTAAGATTTTCAAGCAGGAGAAGATCGGGAACATTCAGACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGTACTGCGACTTTCCCACTCGAAGTGGCTCGCAAACATATGCAGGTGGGGGCCGTGGGTGGCAGGCAGTATAATGATGTGTTTCACGCCCTTACAAGCATACTTGAACACGAAGGTATTGCCGGTTTATACAGAGGGCTTGGGCCTAGCTGCATGAAGTTGGTCCCTGCAGCTGGAATTTCTTTTATGTGCTATGAAGCAATGAAGAAGATACTGGTAGAGGATGATGAGGAAGCATAG

Protein Analysis

401

Amino Acids

42.91

Weight (kDa)

8.98

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 118 - 203 3.8e-21 Mitochondrial carrier protein
Mito_carr PF00153 210 - 298 5.5e-25 Mitochondrial carrier protein
Mito_carr PF00153 306 - 395 1.2e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 647, 997
Acc36I ACCTGC 3 cut(s) 647, 799, 997
AccB1I GGYRCC 2 cut(s) 412, 659
AccBSI CCGCTC 1 cut(s) 392
AccII CGCG 4 cut(s) 122, 184, 186, 380
AclWI GGATC 1 cut(s) 949
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 4 cut(s) 256, 460, 526, 1140
AcuI CTGAAG 2 cut(s) 347, 353
AcyI GRCGYC 2 cut(s) 164, 413
AfaI GTAC 3 cut(s) 218, 469, 967
AfiI CCNNNNNNNGG 3 cut(s) 107, 614, 1136
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 4 cut(s) 704, 901, 963, 1070
AluBI AGCT 8 cut(s) 211, 331, 571, 678, 799, 950, 1113, 1136
AluI AGCT 8 cut(s) 211, 331, 571, 678, 799, 950, 1113, 1136
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 2 cut(s) 416, 609
AlwI GGATC 1 cut(s) 949
AlwNI CAGNNNCTG 1 cut(s) 950
AoxI GGCC 7 cut(s) 4, 264, 384, 642, 748, 1014, 1106
ApeKI GCWGC 5 cut(s) 211, 845, 947, 1113, 1133
ApoI RAATTY 4 cut(s) 256, 460, 526, 1140
AseI ATTAAT 1 cut(s) 650
AspLEI GCGC 4 cut(s) 186, 380, 415, 553
AspS9I GGNCC 6 cut(s) 4, 264, 788, 1014, 1106, 1126
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 788, 1126
BanI GGYRCC 2 cut(s) 412, 659
BanII GRGCYC 1 cut(s) 680
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 5 cut(s) 198, 832, 959, 1100, 1145
BccI CCATC 3 cut(s) 436, 494, 608
BceAI ACGGC 6 cut(s) 199, 208, 400, 420, 763, 1001
BcgI CGANNNNNNTGC 2 cut(s) 1064, 1098
BcoDI GTCTC 2 cut(s) 416, 609
BfaI CTAG 1 cut(s) 1110
BfmI CTRYAG 3 cut(s) 564, 792, 1131
BfoI RGCGCY 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 710
BfuAI ACCTGC 3 cut(s) 647, 799, 997
BisI GCNGC 9 cut(s) 173, 187, 196, 199, 212, 846, 948, 1114, 1134
BlsI GCNGC 9 cut(s) 174, 188, 197, 200, 213, 847, 949, 1115, 1135
BmcAI AGTACT 2 cut(s) 469, 967
Bme18I GGWCC 2 cut(s) 788, 1126
BmgT120I GGNCC 6 cut(s) 4, 264, 788, 1014, 1106, 1126
BmiI GGNNCC 8 cut(s) 71, 171, 265, 414, 661, 789, 1015, 1128
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 813
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BpmI CTGGAG 1 cut(s) 690
BsaHI GRCGYC 2 cut(s) 164, 413
BsaJI CCNNGG 2 cut(s) 267, 1017
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 614, 1136
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 2 cut(s) 819, 1182
Bse3DI GCAATG 2 cut(s) 872, 1170
BseDI CCNNGG 2 cut(s) 267, 1017
BseGI GGATG 2 cut(s) 210, 1192
BseLI CCNNNNNNNGG 3 cut(s) 107, 614, 1136
BseMI GCAATG 2 cut(s) 872, 1170
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 819, 1182
BseRI GAGGAG 4 cut(s) 287, 290, 293, 376
BseXI GCAGC 5 cut(s) 198, 832, 959, 1100, 1145
Bsh1236I CGCG 4 cut(s) 122, 184, 186, 380
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 7 cut(s) 6, 266, 386, 644, 750, 1016, 1108
BshNI GGYRCC 2 cut(s) 412, 659
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 7 cut(s) 7, 34, 108, 167, 387, 641, 1086
BsiWI CGTACG 1 cut(s) 216
BslFI GGGAC 3 cut(s) 66, 801, 1112
BslI CCNNNNNNNGG 3 cut(s) 107, 614, 1136
BsmAI GTCTC 2 cut(s) 416, 609
BsmFI GGGAC 3 cut(s) 66, 801, 1112
BsnI GGCC 7 cut(s) 6, 266, 386, 644, 750, 1016, 1108
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 2 cut(s) 912, 941
Bsp68I TCGCGA 1 cut(s) 122
BspANI GGCC 7 cut(s) 6, 266, 386, 644, 750, 1016, 1108
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 4 cut(s) 122, 184, 186, 380
BspLI GGNNCC 8 cut(s) 71, 171, 265, 414, 661, 789, 1015, 1128
BspMAI CTGCAG 2 cut(s) 796, 1135
BspMI ACCTGC 3 cut(s) 647, 799, 997
BspPI GGATC 1 cut(s) 949
BspT107I GGYRCC 2 cut(s) 412, 659
BspTI CTTAAG 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 392
BsrDI GCAATG 2 cut(s) 872, 1170
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 2 cut(s) 819, 1182
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 2 cut(s) 267, 1017
BssMI GATC 2 cut(s) 912, 941
BssNI GRCGYC 2 cut(s) 164, 413
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 4 cut(s) 44, 589, 624, 860
Bst6I CTCTTC 1 cut(s) 777
BstACI GRCGYC 2 cut(s) 164, 413
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 953
BstC8I GCNNGC 3 cut(s) 124, 994, 1028
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 1017
BstF5I GGATG 2 cut(s) 210, 1192
BstFNI CGCG 4 cut(s) 122, 184, 186, 380
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 4 cut(s) 186, 380, 415, 553
BstKTI GATC 2 cut(s) 915, 944
BstMAI GTCTC 2 cut(s) 416, 609
BstMBI GATC 2 cut(s) 912, 941
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 195, 953
BstSFI CTRYAG 3 cut(s) 564, 792, 1131
BstUI CGCG 4 cut(s) 122, 184, 186, 380
BstV1I GCAGC 5 cut(s) 198, 832, 959, 1100, 1145
BsuRI GGCC 7 cut(s) 6, 266, 386, 644, 750, 1016, 1108
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 2 cut(s) 210, 1192
BtuMI TCGCGA 1 cut(s) 122
BveI ACCTGC 3 cut(s) 647, 799, 997
Cac8I GCNNGC 3 cut(s) 124, 994, 1028
CaiI CAGNNNCTG 1 cut(s) 950
CfoI GCGC 4 cut(s) 186, 380, 415, 553
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 6 cut(s) 4, 264, 788, 1014, 1106, 1126
CseI GACGC 2 cut(s) 172, 442
Csp6I GTAC 3 cut(s) 217, 468, 966
CviAII CATG 1 cut(s) 1117
CviQI GTAC 3 cut(s) 217, 468, 966
DdeI CTNAG 1 cut(s) 471
DinI GGCGCC 1 cut(s) 414
DpnI GATC 2 cut(s) 914, 943
DpnII GATC 2 cut(s) 912, 941
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 680
Eco47I GGWCC 2 cut(s) 788, 1126
Eco53kI GAGCTC 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 347, 353
EcoICRI GAGCTC 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 788
EcoRI GAATTC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 680
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 1120
FaqI GGGAC 3 cut(s) 66, 801, 1112
FatI CATG 1 cut(s) 1116
FauI CCCGC 2 cut(s) 189, 194
FauNDI CATATG 2 cut(s) 841, 1002
Fnu4HI GCNGC 9 cut(s) 173, 187, 196, 199, 212, 846, 948, 1114, 1134
FokI GGATG 2 cut(s) 217, 1199
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 9 cut(s) 173, 187, 196, 199, 212, 846, 948, 1114, 1134
FspBI CTAG 1 cut(s) 1110
GlaI GCGC 4 cut(s) 185, 379, 414, 552
GluI GCNGC 9 cut(s) 173, 187, 196, 199, 212, 846, 948, 1114, 1134
GsuI CTGGAG 1 cut(s) 690
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 7 cut(s) 6, 266, 386, 644, 750, 1016, 1108
HapII CCGG 7 cut(s) 7, 34, 108, 167, 387, 641, 1086
HgaI GACGC 2 cut(s) 172, 442
HhaI GCGC 4 cut(s) 186, 380, 415, 553
Hin1I GRCGYC 2 cut(s) 164, 413
Hin1II CATG 1 cut(s) 1120
Hin6I GCGC 4 cut(s) 184, 378, 413, 551
HinP1I GCGC 4 cut(s) 184, 378, 413, 551
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 4 cut(s) 79, 541, 715, 831
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 7 cut(s) 7, 34, 108, 167, 387, 641, 1086
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 507, 592
Hpy188I TCNGA 5 cut(s) 140, 152, 162, 732, 927
Hpy188III TCNNGA 3 cut(s) 121, 755, 916
Hpy8I GTNNAC 2 cut(s) 507, 592
Hpy99I CGWCG 4 cut(s) 32, 44, 166, 194
HpyAV CCTTC 6 cut(s) 284, 310, 363, 487, 761, 1070
HpyCH4III ACNGT 4 cut(s) 44, 589, 624, 860
HpyCH4V TGCA 9 cut(s) 60, 94, 656, 761, 794, 848, 1006, 1116, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 195, 953
HpyF3I CTNAG 1 cut(s) 471
Hsp92I GRCGYC 2 cut(s) 164, 413
Hsp92II CATG 1 cut(s) 1120
HspAI GCGC 4 cut(s) 184, 378, 413, 551
KasI GGCGCC 1 cut(s) 412
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 2 cut(s) 912, 941
LmnI GCTCC 3 cut(s) 36, 169, 389
Lsp1109I GCAGC 5 cut(s) 198, 832, 959, 1100, 1145
LweI GCATC 1 cut(s) 748
MaeI CTAG 1 cut(s) 1110
MaeIII GTNAC 1 cut(s) 688
MalI GATC 2 cut(s) 914, 943
MbiI CCGCTC 1 cut(s) 392
MboI GATC 2 cut(s) 912, 941
MboII GAAGA 9 cut(s) 40, 319, 322, 325, 346, 794, 922, 1180, 1183
MhlI GDGCHC 1 cut(s) 680
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 3 cut(s) 88, 709, 840
MmeI TCCRAC 3 cut(s) 118, 185, 399
Mph1103I ATGCAT 1 cut(s) 763
MseI TTAA 7 cut(s) 252, 339, 480, 591, 650, 711, 935
MspA1I CMGCKG 2 cut(s) 950, 1136
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 7 cut(s) 7, 34, 108, 167, 387, 641, 1086
MvnI CGCG 4 cut(s) 122, 184, 186, 380
MwoI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 195, 953
NarI GGCGCC 1 cut(s) 413
NdeI CATATG 2 cut(s) 841, 1002
NdeII GATC 2 cut(s) 912, 941
NlaIII CATG 1 cut(s) 1120
NlaIV GGNNCC 8 cut(s) 71, 171, 265, 414, 661, 789, 1015, 1128
NmeAIII GCCGAG 2 cut(s) 579, 697
NmuCI GTSAC 1 cut(s) 688
NruI TCGCGA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 763
PaqCI CACCTGC 2 cut(s) 647, 997
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 753
PfeI GAWTC 1 cut(s) 541
Pfl23II CGTACG 1 cut(s) 216
PkrI GCNGC 9 cut(s) 174, 188, 197, 200, 213, 847, 949, 1115, 1135
PleI GAGTC 3 cut(s) 87, 709, 839
PluTI GGCGCC 1 cut(s) 416
PpsI GAGTC 3 cut(s) 87, 709, 839
PpuMI RGGWCCY 1 cut(s) 788
PshBI ATTAAT 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 788
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 8 cut(s) 71, 171, 265, 414, 661, 789, 1015, 1128
PspPI GGNCC 6 cut(s) 4, 264, 788, 1014, 1106, 1126
PspPPI RGGWCCY 1 cut(s) 788
PstI CTGCAG 2 cut(s) 796, 1135
PstNI CAGNNNCTG 1 cut(s) 950
PvuII CAGCTG 2 cut(s) 950, 1136
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 3 cut(s) 218, 469, 967
RsaNI GTAC 3 cut(s) 217, 468, 966
SacI GAGCTC 1 cut(s) 680
SaqAI TTAA 7 cut(s) 252, 339, 480, 591, 650, 711, 935
SatI GCNGC 9 cut(s) 173, 187, 196, 199, 212, 846, 948, 1114, 1134
Sau3AI GATC 2 cut(s) 912, 941
Sau96I GGNCC 6 cut(s) 4, 264, 788, 1014, 1106, 1126
ScaI AGTACT 2 cut(s) 469, 967
SchI GAGTC 3 cut(s) 88, 709, 840
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 3 cut(s) 564, 792, 1131
SfoI GGCGCC 1 cut(s) 414
SinI GGWCC 2 cut(s) 788, 1126
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 1110
SstI GAGCTC 1 cut(s) 680
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 4 cut(s) 44, 589, 624, 860
TaqI TCGA 6 cut(s) 27, 77, 398, 464, 756, 984
TatI WGTACW 2 cut(s) 467, 965
TauI GCSGC 4 cut(s) 175, 189, 198, 201
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 7 cut(s) 252, 339, 480, 591, 650, 711, 935
Tru9I TTAA 7 cut(s) 252, 339, 480, 591, 650, 711, 935
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 5 cut(s) 211, 845, 947, 1113, 1133
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 6 cut(s) 221, 248, 506, 1133, 1173, 1181
TspGWI ACGGA 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 2 cut(s) 788, 1126
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 4 cut(s) 256, 460, 526, 1140
XspI CTAG 1 cut(s) 1110
ZrmI AGTACT 2 cut(s) 469, 967
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.