Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017507.1

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Reverse (-)

22292 .. 23513

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017507.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggcggtgagcattgtgtggatcaaagaaattgagttggttgcatggtcctctttcttagtcttagccgggggaaatactgctgcaatttctgatttgatgtgcttgtctgtttttcctctgtttgcttatgatacagttaataagcacctgtcgcccaaagctggagaacagtcgaaacttccaattcctgcctcattagttgcaggtgcatgtgctggagtgagctccacacttatcacatacccccttgagttactaaagactcggctaactattcagagaggcgtatataatggccttcttgatgcatttgtaaaaattattcgagaagagggacctgcagagctctatagaggtcttgcacccagtcttattggagtcattccttatgctgccacaaattactgtgcttatgacacattacggaaagcctatcgtaagattttcaagcaggagaagattgggaacattcagacccttttaattggatcagcagctggtgctatttcaagtactgcaactttccctcttgaagtagctcgcaaacatatgcaggtgggggccgtgggtggaaggcagtataatgatgtgattcatgccctcgcaagcatacttgaacatgaaggtattgctggtttatacagagggctcgggcctagctgcatgaagttggtgcctgcagcagggatttctttcatgtgctacgaagcaatgaagaagatactggtagaggatgatgaggaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

250

Amino Acids

26.87

Weight (kDa)

7.61

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	197, 547
Acc36I	ACCTGC	3 cut(s)	197, 349, 547
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	29, 499
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	164, 686
AgsI	TTSAA	4 cut(s)	451, 513, 536, 620
AluBI	AGCT	6 cut(s)	164, 228, 349, 500, 542, 663
AluI	AGCT	6 cut(s)	164, 228, 349, 500, 542, 663
Alw21I	GWGCWC	2 cut(s)	230, 351
AlwI	GGATC	2 cut(s)	29, 499
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	3 cut(s)	298, 564, 656
ApeKI	GCWGC	5 cut(s)	83, 395, 497, 663, 683
AspS9I	GGNCC	4 cut(s)	48, 338, 564, 656
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	2 cut(s)	48, 338
BanI	GGYRCC	1 cut(s)	676
BanII	GRGCYC	3 cut(s)	230, 351, 654
Bbv12I	GWGCWC	2 cut(s)	230, 351
BbvI	GCAGC	5 cut(s)	70, 382, 509, 650, 695
BceAI	ACGGC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	3 cut(s)	342, 352, 681
BfuAI	ACCTGC	3 cut(s)	197, 349, 547
BisI	GCNGC	5 cut(s)	84, 396, 498, 664, 684
BlsI	GCNGC	5 cut(s)	85, 397, 499, 665, 685
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	48, 338
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	4 cut(s)	48, 338, 564, 656
BmiI	GGNNCC	3 cut(s)	339, 565, 678
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	363
BpmI	CTGGAG	2 cut(s)	186, 240
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	69, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 686
Bse1I	ACTGG	2 cut(s)	369, 732
Bse3DI	GCAATG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	69, 567
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	2 cut(s)	164, 686
BseMI	GCAATG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	369, 732
BseXI	GCAGC	5 cut(s)	70, 382, 509, 650, 695
BshFI	GGCC	3 cut(s)	300, 566, 658
BshNI	GGYRCC	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	230, 351
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	164, 686
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	300, 566, 658
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	3 cut(s)	230, 351, 654
Bsp143I	GATC	2 cut(s)	21, 491
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	300, 566, 658
BspLI	GGNNCC	3 cut(s)	339, 565, 678
BspMAI	CTGCAG	2 cut(s)	346, 685
BspMI	ACCTGC	3 cut(s)	197, 349, 547
BspPI	GGATC	2 cut(s)	29, 499
BspT107I	GGYRCC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	369, 732
BssECI	CCNNGG	2 cut(s)	69, 567
BssMI	GATC	2 cut(s)	21, 491
Bst4CI	ACNGT	3 cut(s)	139, 174, 410
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	544, 610, 681
BstDEI	CTNAG	2 cut(s)	58, 64
BstDSI	CCRYGG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	2 cut(s)	24, 494
BstMBI	GATC	2 cut(s)	21, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 503
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	3 cut(s)	342, 352, 681
BstV1I	GCAGC	5 cut(s)	70, 382, 509, 650, 695
BsuRI	GGCC	3 cut(s)	300, 566, 658
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	742
BveI	ACCTGC	3 cut(s)	197, 349, 547
Cac8I	GCNNGC	3 cut(s)	544, 610, 681
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	4 cut(s)	48, 338, 564, 656
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	6 cut(s)	45, 213, 599, 623, 667, 700
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	2 cut(s)	58, 64
DpnI	GATC	2 cut(s)	23, 493
DpnII	GATC	2 cut(s)	21, 491
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	2 cut(s)	228, 349
Eco24I	GRGCYC	3 cut(s)	230, 351, 654
Eco47I	GGWCC	2 cut(s)	48, 338
Eco53kI	GAGCTC	2 cut(s)	228, 349
Eco88I	CYCGRG	1 cut(s)	653
EcoICRI	GAGCTC	2 cut(s)	228, 349
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	3 cut(s)	230, 351, 654
FaeI	CATG	6 cut(s)	48, 216, 602, 626, 670, 703
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	44, 212, 598, 622, 666, 699
FauNDI	CATATG	1 cut(s)	552
Fnu4HI	GCNGC	5 cut(s)	84, 396, 498, 664, 684
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	3 cut(s)	230, 351, 654
Fsp4HI	GCNGC	5 cut(s)	84, 396, 498, 664, 684
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	5 cut(s)	84, 396, 498, 664, 684
GsuI	CTGGAG	2 cut(s)	186, 240
HaeIII	GGCC	3 cut(s)	300, 566, 658
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	6 cut(s)	48, 216, 602, 626, 670, 703
HinfI	GANTC	3 cut(s)	265, 381, 595
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	94, 282, 477
Hpy188III	TCNNGA	3 cut(s)	305, 329, 533
HpyAV	CCTTC	3 cut(s)	311, 570, 620
HpyCH4III	ACNGT	3 cut(s)	139, 174, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 503
HpyF3I	CTNAG	2 cut(s)	58, 64
Hsp92II	CATG	6 cut(s)	48, 216, 602, 626, 670, 703
Kzo9I	GATC	2 cut(s)	21, 491
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	5 cut(s)	70, 382, 509, 650, 695
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	660
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	2 cut(s)	23, 493
MboI	GATC	2 cut(s)	21, 491
MboII	GAAGA	4 cut(s)	344, 472, 730, 733
MhlI	GDGCHC	3 cut(s)	230, 351, 654
MluCI	AATT	6 cut(s)	30, 87, 186, 321, 403, 486
MlyI	GAGTC	2 cut(s)	259, 390
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	2 cut(s)	141, 485
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	154, 503
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	2 cut(s)	21, 491
NlaIII	CATG	6 cut(s)	48, 216, 602, 626, 670, 703
NlaIV	GGNNCC	3 cut(s)	339, 565, 678
NmeAIII	GCCGAG	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	216
PaqCI	CACCTGC	2 cut(s)	197, 547
PfeI	GAWTC	1 cut(s)	595
PkrI	GCNGC	5 cut(s)	85, 397, 499, 665, 685
PleI	GAGTC	2 cut(s)	259, 389
PpsI	GAGTC	2 cut(s)	259, 389
PpuMI	RGGWCCY	1 cut(s)	338
Psp124BI	GAGCTC	2 cut(s)	230, 351
Psp5II	RGGWCCY	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	339, 565, 678
PspPI	GGNCC	4 cut(s)	48, 338, 564, 656
PspPPI	RGGWCCY	1 cut(s)	338
PstI	CTGCAG	2 cut(s)	346, 685
PstNI	CAGNNNCTG	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SacI	GAGCTC	2 cut(s)	230, 351
SaqAI	TTAA	2 cut(s)	141, 485
SatI	GCNGC	5 cut(s)	84, 396, 498, 664, 684
Sau3AI	GATC	2 cut(s)	21, 491
Sau96I	GGNCC	4 cut(s)	48, 338, 564, 656
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	2 cut(s)	259, 390
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	230, 351, 654
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	3 cut(s)	342, 352, 681
SinI	GGWCC	2 cut(s)	48, 338
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	6 cut(s)	30, 87, 186, 321, 403, 486
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	660
SstI	GAGCTC	2 cut(s)	230, 351
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	139, 174, 410
TaqI	TCGA	2 cut(s)	176, 328
TasI	AATT	6 cut(s)	30, 87, 186, 321, 403, 486
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	2 cut(s)	141, 485
Tru9I	TTAA	2 cut(s)	141, 485
TseI	GCWGC	5 cut(s)	83, 395, 497, 663, 683
TspDTI	ATGAA	5 cut(s)	587, 639, 683, 688, 731
TspGWI	ACGGA	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	48, 338
XagI	CCTNNNNNAGG	1 cut(s)	684
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	660
ZrmI	AGTACT	1 cut(s)	517
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.