Rw6G034020

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
58569371 .. 58571855
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034020.1

Sequence Viewer

Length: 1197 bp
ATGGGGCGGAGAGATGTTCAGGTTTTCGATGACAGGAGCGATGGATTCTTCTCCGTTTGCAATTTGGGGTTTCAATCGAGTCCTCAACAGGTGCAGTATCCCCACGCCGGAGGCTTATTCGCCAGCGTTTCCCAAGTCGGAATGGGGTTTGGAGTCTCGCCAACGCCGGACCCGCAAAACCCGCGCGGGGACGGCGGCGGCATGAAGCTGCCGTACGCCGACCTCTACATGAAGTATGTGGAGGGCATTAAGAATTTTGGGGCCAAGGAGGAGGACGTAGTAGAAGGGGAAGGGGTGGTGAAGAAGAAGAAGGGTGGTCTCAAGTTGAAGATTAAGATTGCTAATCCTTCTCTGAGGAGGTTGATTAGTGGTGCGGTGGCCGGAGCGGTGTCGAGGACGGCGGTGGCGCCGTTGGAGACTATAAGGACGCATTTGATGGTTGGGAGTAGTGGGAATTCGTGTACTGAGGTGTTTACTGATATTATGAAGGTGGATGGGTGGACGGGATTGTTTAGGGGGAATTTGGTCAATGTGATTCGGGTTGCACCGAGCAAGGCAATAGAGCTGTTTGCTTATGATACAGTTAATAAGCACCTGTCGCCCAAAGCTGGAGAACAGTCGAAACTTCCAATTCCTGCCTCATTAGTTGCAGGTGCCTGTGCTGGAGTGAGCTCCACACTTATCACATACCCCCTTGAGTTACTAAAGACTCGGCTAACTATTCAGAGAGGCGTATATAATGGCCTTCTTGATGCATTTGTAAAAATTATTCGAGAAGAGGGACCTGCAGAGCTCTATAGAGGTCTTGCACCCAGTCTTATTGGAGTCATTCCTTATGCTGCCACAAATTACTGTGCTTATGACACATTACGGAAAGCCTATCGTAAGATTTTCAAGCAGGAGAAGATTGGGAACATTCAGACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGTACTGCAACTTTCCCTCTTGAAGTAGCTCGCAAACATATGCAGGTGGGGGCCGTGGGTGGAAGGCAGTATAATGATGTGATTCATGCTCTCGCAAGCATACTTGAACATGAAGGTATTGCTGGATTATACAGAGGGCTCGGGCCTAGCTGCATGAAGTTGGTGCCTGCAGCAGGGATTTCTTTCATGTGCTACGAAGCAATGAAGAAGATACTGGTAGAGGATGATGAGGAAGCATAG

Protein Analysis

398

Amino Acids

42.66

Weight (kDa)

9.02

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 116 - 200 6.6e-21 Mitochondrial carrier protein
Mito_carr PF00153 208 - 296 1.1e-24 Mitochondrial carrier protein
Mito_carr PF00153 304 - 393 2.1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 641, 991
Acc36I ACCTGC 3 cut(s) 641, 793, 991
AccB1I GGYRCC 3 cut(s) 406, 653, 1120
AccBSI CCGCTC 1 cut(s) 386
AccII CGCG 2 cut(s) 184, 186
AciI CCGC 9 cut(s) 7, 173, 182, 186, 195, 198, 374, 386, 401
AclWI GGATC 1 cut(s) 943
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 3 cut(s) 253, 454, 520
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 3 cut(s) 215, 463, 961
AfiI CCNNNNNNNGG 4 cut(s) 107, 187, 608, 1130
AgsI TTSAA 6 cut(s) 74, 328, 895, 957, 980, 1064
AluBI AGCT 8 cut(s) 208, 565, 608, 672, 793, 944, 986, 1107
AluI AGCT 8 cut(s) 208, 565, 608, 672, 793, 944, 986, 1107
Alw21I GWGCWC 2 cut(s) 674, 795
Alw26I GTCTC 3 cut(s) 160, 323, 410
AlwI GGATC 1 cut(s) 943
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 1097
AoxI GGCC 5 cut(s) 261, 378, 742, 1008, 1100
ApeKI GCWGC 5 cut(s) 208, 839, 941, 1107, 1127
ApoI RAATTY 3 cut(s) 253, 454, 520
AspLEI GCGC 2 cut(s) 186, 409
AspS9I GGNCC 5 cut(s) 169, 261, 782, 1008, 1100
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 1097
AvaII GGWCC 2 cut(s) 169, 782
BanI GGYRCC 3 cut(s) 406, 653, 1120
BanII GRGCYC 3 cut(s) 674, 795, 1098
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
Bbv12I GWGCWC 2 cut(s) 674, 795
BbvI GCAGC 5 cut(s) 195, 826, 953, 1094, 1139
BccI CCATC 3 cut(s) 35, 430, 488
BceAI ACGGC 5 cut(s) 196, 208, 394, 414, 995
BciVI GTATCC 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 160, 323, 410
BfaI CTAG 1 cut(s) 1104
BfmI CTRYAG 3 cut(s) 786, 796, 1125
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 3 cut(s) 641, 793, 991
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 7 cut(s) 196, 199, 209, 840, 942, 1108, 1128
BlsI GCNGC 7 cut(s) 197, 200, 210, 841, 943, 1109, 1129
BmcAI AGTACT 1 cut(s) 961
Bme18I GGWCC 2 cut(s) 169, 782
BmeT110I CYCGRG 1 cut(s) 1097
BmgT120I GGNCC 5 cut(s) 169, 261, 782, 1008, 1100
BmiI GGNNCC 7 cut(s) 171, 262, 408, 655, 783, 1009, 1122
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 1 cut(s) 742
BmuI ACTGGG 1 cut(s) 807
BpmI CTGGAG 2 cut(s) 630, 684
BpuEI CTTGAG 2 cut(s) 305, 716
BsaHI GRCGYC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 264, 1011
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 187, 608, 1130
Bse1I ACTGG 2 cut(s) 813, 1176
Bse3DI GCAATG 1 cut(s) 1164
BseDI CCNNGG 2 cut(s) 264, 1011
BseGI GGATG 2 cut(s) 499, 1186
BseLI CCNNNNNNNGG 4 cut(s) 107, 187, 608, 1130
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 2 cut(s) 344, 456
BseNI ACTGG 2 cut(s) 813, 1176
BseRI GAGGAG 2 cut(s) 284, 370
BseXI GCAGC 5 cut(s) 195, 826, 953, 1094, 1139
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 2 cut(s) 184, 186
BshFI GGCC 5 cut(s) 263, 380, 744, 1010, 1102
BshNI GGYRCC 3 cut(s) 406, 653, 1120
BsiHKAI GWGCWC 2 cut(s) 674, 795
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 3 cut(s) 108, 167, 381
BsiWI CGTACG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 203, 795
BslI CCNNNNNNNGG 4 cut(s) 107, 187, 608, 1130
BsmAI GTCTC 3 cut(s) 160, 323, 410
BsmFI GGGAC 2 cut(s) 203, 795
BsnI GGCC 5 cut(s) 263, 380, 744, 1010, 1102
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 1097
Bsp1286I GDGCHC 3 cut(s) 674, 795, 1098
Bsp143I GATC 1 cut(s) 935
BspACI CCGC 9 cut(s) 7, 173, 182, 186, 195, 198, 374, 386, 401
BspANI GGCC 5 cut(s) 263, 380, 744, 1010, 1102
BspCNI CTCAG 2 cut(s) 345, 457
BspFNI CGCG 2 cut(s) 184, 186
BspLI GGNNCC 7 cut(s) 171, 262, 408, 655, 783, 1009, 1122
BspMAI CTGCAG 2 cut(s) 790, 1129
BspMI ACCTGC 3 cut(s) 641, 793, 991
BspPI GGATC 1 cut(s) 943
BspT107I GGYRCC 3 cut(s) 406, 653, 1120
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1164
BsrI ACTGG 2 cut(s) 813, 1176
BssECI CCNNGG 2 cut(s) 264, 1011
BssMI GATC 1 cut(s) 935
BssNI GRCGYC 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 583, 618, 854
Bst6I CTCTTC 1 cut(s) 771
BstACI GRCGYC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 124, 988, 1054, 1125
BstDEI CTNAG 2 cut(s) 353, 465
BstDSI CCRYGG 1 cut(s) 1011
BstENI CCTNNNNNAGG 1 cut(s) 1128
BstF5I GGATG 2 cut(s) 499, 1186
BstFNI CGCG 2 cut(s) 184, 186
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 186, 409
BstKTI GATC 1 cut(s) 938
BstMAI GTCTC 3 cut(s) 160, 323, 410
BstMBI GATC 1 cut(s) 935
BstMWI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 598, 947
BstSFI CTRYAG 3 cut(s) 786, 796, 1125
BstUI CGCG 2 cut(s) 184, 186
BstV1I GCAGC 5 cut(s) 195, 826, 953, 1094, 1139
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 5 cut(s) 263, 380, 744, 1010, 1102
BtgI CCRYGG 1 cut(s) 1011
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 499, 1186
BveI ACCTGC 3 cut(s) 641, 793, 991
Cac8I GCNNGC 4 cut(s) 124, 988, 1054, 1125
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 2 cut(s) 186, 409
Cfr13I GGNCC 5 cut(s) 169, 261, 782, 1008, 1100
CseI GACGC 1 cut(s) 436
Csp6I GTAC 3 cut(s) 214, 462, 960
CviAII CATG 6 cut(s) 202, 229, 1043, 1067, 1111, 1144
CviQI GTAC 3 cut(s) 214, 462, 960
DdeI CTNAG 2 cut(s) 353, 465
DinI GGCGCC 1 cut(s) 408
DpnI GATC 1 cut(s) 937
DpnII GATC 1 cut(s) 935
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 2 cut(s) 672, 793
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 3 cut(s) 674, 795, 1098
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 169, 782
Eco53kI GAGCTC 2 cut(s) 672, 793
Eco88I CYCGRG 1 cut(s) 1097
EcoICRI GAGCTC 2 cut(s) 672, 793
EcoNI CCTNNNNNAGG 1 cut(s) 1128
EcoO109I RGGNCCY 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 3 cut(s) 674, 795, 1098
EgeI GGCGCC 1 cut(s) 408
EheI GGCGCC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 6 cut(s) 205, 232, 1046, 1070, 1114, 1147
FaqI GGGAC 2 cut(s) 203, 795
FatI CATG 6 cut(s) 201, 228, 1042, 1066, 1110, 1143
FauI CCCGC 3 cut(s) 179, 180, 189
FauNDI CATATG 1 cut(s) 996
Fnu4HI GCNGC 7 cut(s) 196, 199, 209, 840, 942, 1108, 1128
FokI GGATG 2 cut(s) 506, 1193
FriOI GRGCYC 3 cut(s) 674, 795, 1098
Fsp4HI GCNGC 7 cut(s) 196, 199, 209, 840, 942, 1108, 1128
FspBI CTAG 1 cut(s) 1104
GlaI GCGC 2 cut(s) 185, 408
GluI GCNGC 7 cut(s) 196, 199, 209, 840, 942, 1108, 1128
GsuI CTGGAG 2 cut(s) 630, 684
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 5 cut(s) 263, 380, 744, 1010, 1102
HapII CCGG 3 cut(s) 108, 167, 381
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 186, 409
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 6 cut(s) 205, 232, 1046, 1070, 1114, 1147
Hin6I GCGC 2 cut(s) 184, 407
HinP1I GCGC 2 cut(s) 184, 407
HinfI GANTC 7 cut(s) 45, 79, 153, 535, 709, 825, 1039
HpaII CCGG 3 cut(s) 108, 167, 381
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 462, 474, 501
Hpy188I TCNGA 4 cut(s) 140, 354, 726, 921
Hpy188III TCNNGA 3 cut(s) 749, 773, 977
Hpy8I GTNNAC 3 cut(s) 462, 474, 501
HpyAV CCTTC 8 cut(s) 278, 284, 304, 357, 481, 755, 1014, 1064
HpyCH4III ACNGT 3 cut(s) 583, 618, 854
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 598, 947
HpyF3I CTNAG 2 cut(s) 353, 465
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 6 cut(s) 205, 232, 1046, 1070, 1114, 1147
HspAI GCGC 2 cut(s) 184, 407
KasI GGCGCC 1 cut(s) 406
Kzo9I GATC 1 cut(s) 935
LmnI GCTCC 3 cut(s) 36, 383, 677
Lsp1109I GCAGC 5 cut(s) 195, 826, 953, 1094, 1139
LweI GCATC 1 cut(s) 742
MaeI CTAG 1 cut(s) 1104
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 699
MalI GATC 1 cut(s) 937
MbiI CCGCTC 1 cut(s) 386
MboI GATC 1 cut(s) 935
MboII GAAGA 9 cut(s) 40, 313, 316, 319, 340, 788, 916, 1174, 1177
MhlI GDGCHC 3 cut(s) 674, 795, 1098
MluCI AATT 8 cut(s) 61, 253, 454, 520, 630, 765, 847, 930
Mly113I GGCGCC 1 cut(s) 407
MlyI GAGTC 4 cut(s) 88, 162, 703, 834
MmeI TCCRAC 2 cut(s) 118, 393
Mph1103I ATGCAT 1 cut(s) 757
MseI TTAA 4 cut(s) 249, 333, 585, 929
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 3 cut(s) 108, 167, 381
MvnI CGCG 2 cut(s) 184, 186
MwoI GCNNNNNNNGC 5 cut(s) 172, 181, 192, 598, 947
NarI GGCGCC 1 cut(s) 407
NdeI CATATG 1 cut(s) 996
NdeII GATC 1 cut(s) 935
NlaIII CATG 6 cut(s) 205, 232, 1046, 1070, 1114, 1147
NlaIV GGNNCC 7 cut(s) 171, 262, 408, 655, 783, 1009, 1122
NmeAIII GCCGAG 1 cut(s) 691
NsiI ATGCAT 1 cut(s) 757
PaqCI CACCTGC 2 cut(s) 641, 991
PfeI GAWTC 3 cut(s) 45, 535, 1039
Pfl23II CGTACG 1 cut(s) 213
PkrI GCNGC 7 cut(s) 197, 200, 210, 841, 943, 1109, 1129
PleI GAGTC 4 cut(s) 87, 161, 703, 833
PluTI GGCGCC 1 cut(s) 410
PpsI GAGTC 4 cut(s) 87, 161, 703, 833
PpuMI RGGWCCY 1 cut(s) 782
Psp124BI GAGCTC 2 cut(s) 674, 795
Psp5II RGGWCCY 1 cut(s) 782
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 7 cut(s) 171, 262, 408, 655, 783, 1009, 1122
PspPI GGNCC 5 cut(s) 169, 261, 782, 1008, 1100
PspPPI RGGWCCY 1 cut(s) 782
PstI CTGCAG 2 cut(s) 790, 1129
PstNI CAGNNNCTG 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 3 cut(s) 215, 463, 961
RsaNI GTAC 3 cut(s) 214, 462, 960
SacI GAGCTC 2 cut(s) 674, 795
SaqAI TTAA 4 cut(s) 249, 333, 585, 929
SatI GCNGC 7 cut(s) 196, 199, 209, 840, 942, 1108, 1128
Sau3AI GATC 1 cut(s) 935
Sau96I GGNCC 5 cut(s) 169, 261, 782, 1008, 1100
ScaI AGTACT 1 cut(s) 961
SchI GAGTC 4 cut(s) 88, 162, 703, 834
SduI GDGCHC 3 cut(s) 674, 795, 1098
SfaNI GCATC 1 cut(s) 742
SfcI CTRYAG 3 cut(s) 786, 796, 1125
SfoI GGCGCC 1 cut(s) 408
SinI GGWCC 2 cut(s) 169, 782
SmlI CTYRAG 2 cut(s) 320, 695
SmoI CTYRAG 2 cut(s) 320, 695
Sse9I AATT 8 cut(s) 61, 253, 454, 520, 630, 765, 847, 930
SsiI CCGC 9 cut(s) 7, 173, 182, 186, 195, 198, 374, 386, 401
SspDI GGCGCC 1 cut(s) 406
SspMI CTAG 1 cut(s) 1104
SstI GAGCTC 2 cut(s) 674, 795
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 583, 618, 854
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 27, 77, 392, 620, 772
TasI AATT 8 cut(s) 61, 253, 454, 520, 630, 765, 847, 930
TatI WGTACW 2 cut(s) 461, 959
TauI GCSGC 2 cut(s) 198, 201
TfiI GAWTC 3 cut(s) 45, 535, 1039
Tru1I TTAA 4 cut(s) 249, 333, 585, 929
Tru9I TTAA 4 cut(s) 249, 333, 585, 929
TseI GCWGC 5 cut(s) 208, 839, 941, 1107, 1127
TspDTI ATGAA 8 cut(s) 218, 245, 500, 1031, 1083, 1127, 1132, 1175
TspGWI ACGGA 2 cut(s) 43, 886
VpaK11BI GGWCC 2 cut(s) 169, 782
XagI CCTNNNNNAGG 1 cut(s) 1128
XapI RAATTY 3 cut(s) 253, 454, 520
XspI CTAG 1 cut(s) 1104
ZrmI AGTACT 1 cut(s) 961
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.