Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Reverse (-)

27198667 .. 27200805

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGGATATTATCAATGTATAAATTAGAAAACATCGCCAATGGCAACTTTCCCAAAGTGGTTCTCTGTCATCCAGCATACTTCCGTATTGCTGCTTTGTTGCACGGGCAAAGGGAGACGCTTGAGCAGGGAAAGAGAAATTTTAATAGATTTGGAGGGTGGCTGGGAAAGAATTCAATATTAGGCAAAAATTTGAGGCTCTTGGAAGATTTGCATTTCCATCTTCTTGCTTCTCGTGATTCTAGTTCAGGGAGTATGGAAGGCTATAGTACCTCAGTAGGTACGAGTACTAGCTTGGATTATTTTTCATGGGAAGATGAATACGTGGGATTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

6.9

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RFC1	PF08519	35 - 86	5.6e-06	Replication factor RFC1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	139, 172, 190
AfaI	GTAC	3 cut(s)	271, 283, 289
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	139, 172, 190
Asp700I	GAANNNNTTC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	243, 291
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmcAI	AGTACT	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	325
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	287
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	70
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	270, 282, 288
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	4 cut(s)	163, 199, 264, 294
CviKI_1	RGCY	4 cut(s)	163, 199, 264, 294
CviQI	GTAC	3 cut(s)	270, 282, 288
DdeI	CTNAG	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	312
FaiI	YATR	5 cut(s)	21, 79, 257, 267, 310
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	243, 291
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	312
HinfI	GANTC	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	103, 214
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	312
LpnPI	CCDG	4 cut(s)	87, 113, 149, 234
Lsp1109I	GCAGC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	243, 291
MaeII	ACGT	1 cut(s)	324
MboII	GAAGA	3 cut(s)	215, 218, 326
MluCI	AATT	4 cut(s)	23, 139, 172, 190
MnlI	CCTC	3 cut(s)	149, 189, 283
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	144
NlaIII	CATG	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	163
RsaI	GTAC	3 cut(s)	271, 283, 289
RsaNI	GTAC	3 cut(s)	270, 282, 288
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	289
SetI	ASST	4 cut(s)	275, 283, 296, 327
SfcI	CTRYAG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	23, 139, 172, 190
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	2 cut(s)	243, 291
TaiI	ACGT	1 cut(s)	327
TasI	AATT	4 cut(s)	23, 139, 172, 190
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	297, 333
TspGWI	ACGGA	1 cut(s)	74
XapI	RAATTY	3 cut(s)	139, 172, 190
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	2 cut(s)	243, 291
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.