Rroxscaffold_7G00169870

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
10371235 .. 10373869
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169870.1

Sequence Viewer

Length: 1224 bp
ATGGGGCGGAGAGATGTTCAGGTTTTCGATGACAGGAGCGATGGATTCTTCTCCGTTTGCAATTTGGGGTTTCAATCGAGTCCCCAACAGGTGCAGTATCCCCACGCCGGAGGCTTATTCGCCAGCGTTTCCCAAGTCGGAATGGGGTTCGGAGTCTCGCCAACGCCGGACCCGCAAAACCAGCGCGGCGACGGCGGCGGCATGAAGCTTCCGTACGCCGACCTGTACATGAAGTATGTGGAGGGCATTAAGAATTTTGGGGTCAAGGAGGAGGAGGTAGTAGAAGGGGAAGGGGTGGTGAAGAAGAAGAAGGGTGGTCTCAAGTTGAAGATTAAGATTGCTAATCCTTCTCTGAGGAGGTTGATTAGTGGTGCGGTGGCCGGTGCGGTGTCGAGGACGGCGGTGGCGCCGTTGGAGACTATAAGGACGCATTTGATGGTTGGGAGTAGTGGGAATTCGAGTACTGAGATCACGGCTGTGAGCATTGTGTGGATCAAAGAAATTGAGGTGGTTGCATGGTCCTCTTTGTTAGTCTTAGCCGGGGGAAATACTGCTGCAATTTCTGATTTGATATGCTTGTCTGTTTTTCCTCTGTTTGCTTATGATACAGTTAATAAGCACCTGTCGCCCAAAGCTGGAGAGCAGTCAAAACTTCCAATTCCTGCCTCATTAGTTGCAGGTGCCTGTGCTGGAGTAAGCTCCACACTTATCACATACCCCCTTGAGTTACTAAAGACTCGGCTAACCATTCAGAGAGGCGTATATAATGGCCTTCTTGATGCATTTGTAAAAATTATTCGAGAAGAGGGACCTGCAGAGCTCTATAGAGGTCTTGCACCCAGTCTTATTGGAGTCATTCCTTATGCTGCCACAAATTACTGTGCTTATGACACATTACGGAAAGCCTATCGTAAGATTTTCAAGCAGGAGAAGATTGGGAACATTCAGACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGTACCGCAACTTTCCCTCTTGAAGTAGCTCGCAAACATATGCAGGTGGGGGCCGTGGGTGGAAGGCAGTATAATGATGTGATTCATGCCCTCGCAAGCATACTTGAACATGAAGGTATTGCTGGTTTATACAGAGGGCTTGGGCCTAGCTGCATGAAGTTGGTGCCTGCAGCAGGGATTTCTTTCATGTGCTACGAAGCAATGAAGAAGATACTGGTAGAGGATGATGAGGAAGCATAG

Protein Analysis

407

Amino Acids

43.47

Weight (kDa)

8.72

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 116 - 209 4.5e-08 Mitochondrial carrier protein
Mito_carr PF00153 217 - 305 1.1e-24 Mitochondrial carrier protein
Mito_carr PF00153 313 - 402 2.1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 668, 1018
Acc36I ACCTGC 3 cut(s) 668, 820, 1018
AccB1I GGYRCC 3 cut(s) 406, 680, 1147
AccII CGCG 1 cut(s) 186
AciI CCGC 9 cut(s) 7, 173, 186, 195, 198, 374, 386, 401, 990
AclWI GGATC 2 cut(s) 500, 970
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 253, 454
AcyI GRCGYC 1 cut(s) 407
AfaI GTAC 4 cut(s) 215, 227, 463, 988
AfiI CCNNNNNNNGG 3 cut(s) 107, 635, 1157
AgsI TTSAA 6 cut(s) 74, 328, 922, 984, 1007, 1091
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 7 cut(s) 208, 635, 699, 820, 971, 1013, 1134
AluI AGCT 7 cut(s) 208, 635, 699, 820, 971, 1013, 1134
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 3 cut(s) 160, 323, 410
AlwI GGATC 2 cut(s) 500, 970
AlwNI CAGNNNCTG 1 cut(s) 971
AoxI GGCC 4 cut(s) 378, 769, 1035, 1127
ApeKI GCWGC 5 cut(s) 554, 866, 968, 1134, 1154
ApoI RAATTY 2 cut(s) 253, 454
AspLEI GCGC 2 cut(s) 186, 409
AspS9I GGNCC 5 cut(s) 169, 519, 809, 1035, 1127
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 3 cut(s) 169, 519, 809
BanI GGYRCC 3 cut(s) 406, 680, 1147
BanII GRGCYC 1 cut(s) 822
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 5 cut(s) 541, 853, 980, 1121, 1166
BccI CCATC 2 cut(s) 35, 430
BceAI ACGGC 5 cut(s) 208, 394, 414, 489, 1022
BciVI GTATCC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 160, 323, 410
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 3 cut(s) 813, 823, 1152
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 3 cut(s) 668, 820, 1018
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 8 cut(s) 187, 196, 199, 555, 867, 969, 1135, 1155
BlsI GCNGC 8 cut(s) 188, 197, 200, 556, 868, 970, 1136, 1156
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 3 cut(s) 169, 519, 809
BmgT120I GGNCC 5 cut(s) 169, 519, 809, 1035, 1127
BmiI GGNNCC 6 cut(s) 171, 408, 682, 810, 1036, 1149
BmrFI CCNGG 1 cut(s) 541
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 834
BpmI CTGGAG 2 cut(s) 657, 711
BpuEI CTTGAG 2 cut(s) 305, 743
BpuMI CCSGG 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 540, 1038
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 635, 1157
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 840, 1203
Bse3DI GCAATG 1 cut(s) 1191
BseDI CCNNGG 2 cut(s) 540, 1038
BseGI GGATG 1 cut(s) 1213
BseLI CCNNNNNNNGG 3 cut(s) 107, 635, 1157
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 2 cut(s) 344, 456
BseNI ACTGG 2 cut(s) 840, 1203
BseRI GAGGAG 3 cut(s) 284, 287, 370
BseXI GCAGC 5 cut(s) 541, 853, 980, 1121, 1166
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 380, 771, 1037, 1129
BshNI GGYRCC 3 cut(s) 406, 680, 1147
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 4 cut(s) 108, 167, 381, 540
BsiWI CGTACG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 66, 822
BslI CCNNNNNNNGG 3 cut(s) 107, 635, 1157
BsmAI GTCTC 3 cut(s) 160, 323, 410
BsmFI GGGAC 2 cut(s) 66, 822
BsnI GGCC 4 cut(s) 380, 771, 1037, 1129
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 822
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 3 cut(s) 468, 492, 962
BspACI CCGC 9 cut(s) 7, 173, 186, 195, 198, 374, 386, 401, 990
BspANI GGCC 4 cut(s) 380, 771, 1037, 1129
BspCNI CTCAG 2 cut(s) 345, 457
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 6 cut(s) 171, 408, 682, 810, 1036, 1149
BspMAI CTGCAG 2 cut(s) 817, 1156
BspMI ACCTGC 3 cut(s) 668, 820, 1018
BspPI GGATC 2 cut(s) 500, 970
BspT107I GGYRCC 3 cut(s) 406, 680, 1147
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 1191
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 2 cut(s) 840, 1203
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 540, 1038
BssMI GATC 3 cut(s) 468, 492, 962
BssNI GRCGYC 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 610, 881
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 974
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 4 cut(s) 124, 1015, 1081, 1152
BstDEI CTNAG 3 cut(s) 353, 465, 535
BstDSI CCRYGG 1 cut(s) 1038
BstENI CCTNNNNNAGG 1 cut(s) 1155
BstF5I GGATG 1 cut(s) 1213
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 186, 409
BstKTI GATC 3 cut(s) 471, 495, 965
BstMAI GTCTC 3 cut(s) 160, 323, 410
BstMBI GATC 3 cut(s) 468, 492, 962
BstMWI GCNNNNNNNGC 6 cut(s) 172, 181, 192, 195, 625, 974
BstSCI CCNGG 1 cut(s) 539
BstSFI CTRYAG 3 cut(s) 813, 823, 1152
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 5 cut(s) 541, 853, 980, 1121, 1166
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 4 cut(s) 380, 771, 1037, 1129
BtgI CCRYGG 1 cut(s) 1038
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 1213
BveI ACCTGC 3 cut(s) 668, 820, 1018
Cac8I GCNNGC 4 cut(s) 124, 1015, 1081, 1152
CaiI CAGNNNCTG 1 cut(s) 971
CfoI GCGC 2 cut(s) 186, 409
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 5 cut(s) 169, 519, 809, 1035, 1127
CseI GACGC 1 cut(s) 436
Csp6I GTAC 4 cut(s) 214, 226, 462, 987
CviAII CATG 7 cut(s) 202, 229, 516, 1070, 1094, 1138, 1171
CviQI GTAC 4 cut(s) 214, 226, 462, 987
DdeI CTNAG 3 cut(s) 353, 465, 535
DinI GGCGCC 1 cut(s) 408
DpnI GATC 3 cut(s) 470, 494, 964
DpnII GATC 3 cut(s) 468, 492, 962
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 3 cut(s) 169, 519, 809
Eco53kI GAGCTC 1 cut(s) 820
EcoICRI GAGCTC 1 cut(s) 820
EcoNI CCTNNNNNAGG 1 cut(s) 1155
EcoO109I RGGNCCY 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 454
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 822
EgeI GGCGCC 1 cut(s) 408
EheI GGCGCC 1 cut(s) 408
FaeI CATG 7 cut(s) 205, 232, 519, 1073, 1097, 1141, 1174
FaqI GGGAC 2 cut(s) 66, 822
FatI CATG 7 cut(s) 201, 228, 515, 1069, 1093, 1137, 1170
FauI CCCGC 1 cut(s) 180
FauNDI CATATG 1 cut(s) 1023
Fnu4HI GCNGC 8 cut(s) 187, 196, 199, 555, 867, 969, 1135, 1155
FokI GGATG 1 cut(s) 1220
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 8 cut(s) 187, 196, 199, 555, 867, 969, 1135, 1155
FspBI CTAG 1 cut(s) 1131
GlaI GCGC 2 cut(s) 185, 408
GluI GCNGC 8 cut(s) 187, 196, 199, 555, 867, 969, 1135, 1155
GsuI CTGGAG 2 cut(s) 657, 711
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 4 cut(s) 380, 771, 1037, 1129
HapII CCGG 4 cut(s) 108, 167, 381, 540
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 186, 409
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 7 cut(s) 205, 232, 519, 1073, 1097, 1141, 1174
Hin6I GCGC 2 cut(s) 184, 407
HinP1I GCGC 2 cut(s) 184, 407
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 6 cut(s) 45, 79, 153, 736, 852, 1066
HpaII CCGG 4 cut(s) 108, 167, 381, 540
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 140, 152, 354, 565, 753, 948
Hpy188III TCNNGA 3 cut(s) 776, 800, 1004
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 7 cut(s) 278, 284, 304, 357, 782, 1041, 1091
HpyCH4III ACNGT 2 cut(s) 610, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 181, 192, 195, 625, 974
HpyF3I CTNAG 3 cut(s) 353, 465, 535
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 7 cut(s) 205, 232, 519, 1073, 1097, 1141, 1174
HspAI GCGC 2 cut(s) 184, 407
KasI GGCGCC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 468, 492, 962
LmnI GCTCC 2 cut(s) 36, 704
Lsp1109I GCAGC 5 cut(s) 541, 853, 980, 1121, 1166
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 1131
MaeIII GTNAC 1 cut(s) 726
MalI GATC 3 cut(s) 470, 494, 964
MboI GATC 3 cut(s) 468, 492, 962
MboII GAAGA 9 cut(s) 40, 313, 316, 319, 340, 815, 943, 1201, 1204
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 9 cut(s) 61, 253, 454, 501, 558, 657, 792, 874, 957
Mly113I GGCGCC 1 cut(s) 407
MlyI GAGTC 4 cut(s) 88, 162, 730, 861
MmeI TCCRAC 2 cut(s) 118, 393
Mph1103I ATGCAT 1 cut(s) 784
MseI TTAA 4 cut(s) 249, 333, 612, 956
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 4 cut(s) 108, 167, 381, 540
MspR9I CCNGG 1 cut(s) 541
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 6 cut(s) 172, 181, 192, 195, 625, 974
NarI GGCGCC 1 cut(s) 407
NciI CCSGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 1023
NdeII GATC 3 cut(s) 468, 492, 962
NlaIII CATG 7 cut(s) 205, 232, 519, 1073, 1097, 1141, 1174
NlaIV GGNNCC 6 cut(s) 171, 408, 682, 810, 1036, 1149
NmeAIII GCCGAG 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 784
OliI CACNNNNGTG 1 cut(s) 476
PaqCI CACCTGC 2 cut(s) 668, 1018
PfeI GAWTC 2 cut(s) 45, 1066
Pfl23II CGTACG 1 cut(s) 213
PkrI GCNGC 8 cut(s) 188, 197, 200, 556, 868, 970, 1136, 1156
PleI GAGTC 4 cut(s) 87, 161, 730, 860
PluTI GGCGCC 1 cut(s) 410
PpsI GAGTC 4 cut(s) 87, 161, 730, 860
PpuMI RGGWCCY 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 809
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 6 cut(s) 171, 408, 682, 810, 1036, 1149
PspPI GGNCC 5 cut(s) 169, 519, 809, 1035, 1127
PspPPI RGGWCCY 1 cut(s) 809
PstI CTGCAG 2 cut(s) 817, 1156
PstNI CAGNNNCTG 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 4 cut(s) 215, 227, 463, 988
RsaNI GTAC 4 cut(s) 214, 226, 462, 987
RseI CAYNNNNRTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 4 cut(s) 249, 333, 612, 956
SatI GCNGC 8 cut(s) 187, 196, 199, 555, 867, 969, 1135, 1155
Sau3AI GATC 3 cut(s) 468, 492, 962
Sau96I GGNCC 5 cut(s) 169, 519, 809, 1035, 1127
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 4 cut(s) 88, 162, 730, 861
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 822
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 3 cut(s) 813, 823, 1152
SfoI GGCGCC 1 cut(s) 408
SinI GGWCC 3 cut(s) 169, 519, 809
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 320, 722
SmoI CTYRAG 2 cut(s) 320, 722
Sse9I AATT 9 cut(s) 61, 253, 454, 501, 558, 657, 792, 874, 957
SsiI CCGC 9 cut(s) 7, 173, 186, 195, 198, 374, 386, 401, 990
SspDI GGCGCC 1 cut(s) 406
SspMI CTAG 1 cut(s) 1131
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 539
TaaI ACNGT 2 cut(s) 610, 881
TaqI TCGA 5 cut(s) 27, 77, 392, 458, 799
TasI AATT 9 cut(s) 61, 253, 454, 501, 558, 657, 792, 874, 957
TatI WGTACW 2 cut(s) 225, 461
TauI GCSGC 3 cut(s) 189, 198, 201
TfiI GAWTC 2 cut(s) 45, 1066
Tru1I TTAA 4 cut(s) 249, 333, 612, 956
Tru9I TTAA 4 cut(s) 249, 333, 612, 956
TseI GCWGC 5 cut(s) 554, 866, 968, 1134, 1154
TspDTI ATGAA 7 cut(s) 218, 245, 1058, 1110, 1154, 1159, 1202
TspGWI ACGGA 3 cut(s) 43, 201, 913
VpaK11BI GGWCC 3 cut(s) 169, 519, 809
XagI CCTNNNNNAGG 1 cut(s) 1155
XapI RAATTY 2 cut(s) 253, 454
XspI CTAG 1 cut(s) 1131
ZrmI AGTACT 1 cut(s) 463
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.