Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8184044.1

Orthogroup ID

OG0010485

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8184044.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 482 bp

ctgtttgcttatgatacagttaataagcacctgtcgcccaaagctggagaacagtcgaaacttccaattcctgcctcattagttgcaggtgcctgtgctggagtgagctccacacttatcacatacccccttgagttactaaagactcggctaactattcagagaggcgtatataatggccttcttgatgcatttgtaaaaattattcgagaagagggacctgcagagctctatagaggtcttgcacccagtcttattggagtcattccttatgctgccacaaattactgtgcttatgacacattacggaaagcctatcgtaagattttcaagcaggagaagattgggaacattcagacccttttaattggatcagcagctggtgctatttcaagtactgcaactttccctcttgaagtagctcgcaaacatatgcaggtgggggccgtgggtggaaggcagtataatgatgtgattcatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

161

Amino Acids

17.35

Weight (kDa)

9.49

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32400
fragaria_vesca	FvH4_2g29400
malus_domestica	MD08G1147400.v1.1 MD15G1123400.v1.1
prunus_persica	Prupe.1G478800_v2.0.a1 Prupe.1G478800_v2.0.a1
pyrus_communis	pycom08g12440 pycom15g11120
rosa_chinensis	RchiOBHm_Chr6g0298201
rosa_laevigata	RLG00000011527
rosa_multiflora	Rmu_co8184044.1_g000001 Rmu_sc0017507.1_g000005 Rmu_sc0029323.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169870
rosa_rugosa	Rorug06G0174400 Rorug06G0279500
rosa_samantha	Rh6AG389700 Rh6BG398100 Rh6CG404000 Rh6DG390700
rosa_wichuraiana	Rw6G034020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	77, 427
Acc36I	ACCTGC	3 cut(s)	77, 229, 427
AccB1I	GGYRCC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	331, 393, 416
AluBI	AGCT	5 cut(s)	44, 108, 229, 380, 422
AluI	AGCT	5 cut(s)	44, 108, 229, 380, 422
Alw21I	GWGCWC	2 cut(s)	110, 231
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	178, 444
ApeKI	GCWGC	2 cut(s)	275, 377
AspS9I	GGNCC	2 cut(s)	218, 444
AvaII	GGWCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	110, 231
Bbv12I	GWGCWC	2 cut(s)	110, 231
BbvI	GCAGC	2 cut(s)	262, 389
BceAI	ACGGC	1 cut(s)	431
BfmI	CTRYAG	2 cut(s)	222, 232
BfuAI	ACCTGC	3 cut(s)	77, 229, 427
BisI	GCNGC	2 cut(s)	276, 378
BlsI	GCNGC	2 cut(s)	277, 379
BmcAI	AGTACT	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 444
BmiI	GGNNCC	3 cut(s)	91, 219, 445
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	66, 120
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	262, 389
BshFI	GGCC	2 cut(s)	180, 446
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	110, 231
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	180, 446
Bsp1286I	GDGCHC	2 cut(s)	110, 231
Bsp143I	GATC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	180, 446
BspLI	GGNNCC	3 cut(s)	91, 219, 445
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	3 cut(s)	77, 229, 427
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	19, 54, 290
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	424
BstDSI	CCRYGG	1 cut(s)	447
BstKTI	GATC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 383
BstSFI	CTRYAG	2 cut(s)	222, 232
BstV1I	GCAGC	2 cut(s)	262, 389
BsuRI	GGCC	2 cut(s)	180, 446
BtgI	CCRYGG	1 cut(s)	447
BveI	ACCTGC	3 cut(s)	77, 229, 427
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	218, 444
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	9 cut(s)	44, 108, 151, 180, 229, 314, 380, 422, 446
CviKI_1	RGCY	9 cut(s)	44, 108, 151, 180, 229, 314, 380, 422, 446
CviQI	GTAC	1 cut(s)	396
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	108, 229
Eco24I	GRGCYC	2 cut(s)	110, 231
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	2 cut(s)	108, 229
EcoICRI	GAGCTC	2 cut(s)	108, 229
EcoO109I	RGGNCCY	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	110, 231
FaeI	CATG	1 cut(s)	482
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	478
FauNDI	CATATG	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	276, 378
FriOI	GRGCYC	2 cut(s)	110, 231
Fsp4HI	GCNGC	2 cut(s)	276, 378
GluI	GCNGC	2 cut(s)	276, 378
GsuI	CTGGAG	2 cut(s)	66, 120
HaeIII	GGCC	2 cut(s)	180, 446
Hin1II	CATG	1 cut(s)	482
HinfI	GANTC	3 cut(s)	145, 261, 475
Hpy188I	TCNGA	2 cut(s)	162, 357
Hpy188III	TCNNGA	3 cut(s)	185, 209, 413
HpyAV	CCTTC	2 cut(s)	191, 450
HpyCH4III	ACNGT	3 cut(s)	19, 54, 290
HpyCH4V	TGCA	6 cut(s)	86, 191, 224, 245, 401, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 383
Hsp92II	CATG	1 cut(s)	482
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	262, 389
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	2 cut(s)	224, 352
MhlI	GDGCHC	2 cut(s)	110, 231
MluCI	AATT	4 cut(s)	66, 201, 283, 366
MlyI	GAGTC	2 cut(s)	139, 270
MnlI	CCTC	5 cut(s)	85, 158, 208, 230, 420
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	21, 365
MspA1I	CMGCKG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	34, 383
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	3 cut(s)	91, 219, 445
NmeAIII	GCCGAG	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	193
PaqCI	CACCTGC	2 cut(s)	77, 427
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	277, 379
PleI	GAGTC	2 cut(s)	139, 269
PpsI	GAGTC	2 cut(s)	139, 269
PpuMI	RGGWCCY	1 cut(s)	218
Psp124BI	GAGCTC	2 cut(s)	110, 231
Psp5II	RGGWCCY	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	91, 219, 445
PspPI	GGNCC	2 cut(s)	218, 444
PspPPI	RGGWCCY	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SacI	GAGCTC	2 cut(s)	110, 231
SaqAI	TTAA	2 cut(s)	21, 365
SatI	GCNGC	2 cut(s)	276, 378
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	2 cut(s)	218, 444
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	2 cut(s)	139, 270
SduI	GDGCHC	2 cut(s)	110, 231
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	222, 232
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	66, 201, 283, 366
SstI	GAGCTC	2 cut(s)	110, 231
TaaI	ACNGT	3 cut(s)	19, 54, 290
TaqI	TCGA	2 cut(s)	56, 208
TasI	AATT	4 cut(s)	66, 201, 283, 366
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	21, 365
Tru9I	TTAA	2 cut(s)	21, 365
TseI	GCWGC	2 cut(s)	275, 377
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.