Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008522

Physical Location & Seq

Genomic Coordinates Reverse (-)

16323084 .. 16325295

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAATCTAGTTGTGAGCTCTTCGTGTTTGCCCCCCTTTATTTTCTGTTCTTTAAGTGGAAGATCAATCAAAAATAATAGAAGAACAGAGACGACGAAACCTGCCGGAGAACTGAGGGGAGAAAAAAACCCGGCGAAAAAGGGAAATTCGAATTCGTCTTCTGTTGATCATTGCTTCACTTCTGCTTCCAGAGCTTTTACTCAGAAGAAGCTCGCTGATCTCAAATCTCTCTTTTTTTCCCTCGCTTCCAAGTCTCAGAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTCTTTAGGAGAAAGGATCTTTGATATGGTTACTCAACACAGGAAAGATGATAAAATGACTTTTGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGATGATGAGATTGCTGAGTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGAGAAGGTCTGATTTAGAGTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGGAGATGGTAGATGCGCTACTCGATGCCGCTACTTTCTCAAAATCTGATGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCCCACTCGTTCCAACTATCAGAAAGTTCCTCGGCAGCTTGCTTATTCCCCCGGGTCCAGTGAGACCTGGATATCAAGTCCCGGATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAAGCTGTTGTATCGCAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATCGGGGATGGAGGGATCGAACATGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

313

Amino Acids

34.87

Weight (kDa)

5.71

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45243 AT4G34070 AT5G06260 AT5G06260 AT5G06260
fragaria_vesca	FvH4_6g19780
malus_domestica	MD14G1033800.v1.1
prunus_persica	Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1
pyrus_communis	pycom14g02980
rosa_chinensis	RchiOBHm_Chr3g0475131
rosa_laevigata	RLG00000023861
rosa_multiflora	Rmu_sc0003093.1_g000026 Rmu_sc0040867.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406540
rosa_rugosa	Rorug03G0146900
rosa_samantha	Rh3AG196700 Rh3BG226700 Rh3DG222200
rosa_wichuraiana	Rw3G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	663
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	2 cut(s)	551, 597
AclWI	GGATC	3 cut(s)	338, 756, 934
AcsI	RAATTY	2 cut(s)	145, 151
AcuI	CTGAAG	1 cut(s)	637
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	380, 520, 647, 892
AjnI	CCWGG	3 cut(s)	291, 504, 730
AluBI	AGCT	9 cut(s)	18, 194, 211, 660, 702, 824, 841, 856, 888
AluI	AGCT	9 cut(s)	18, 194, 211, 660, 702, 824, 841, 856, 888
Alw21I	GWGCWC	2 cut(s)	20, 826
Alw26I	GTCTC	4 cut(s)	83, 258, 280, 721
AlwI	GGATC	3 cut(s)	338, 756, 934
AlwNI	CAGNNNCTG	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	715
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	1 cut(s)	699
ApoI	RAATTY	2 cut(s)	145, 151
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	4 cut(s)	131, 716, 717, 746
AsuHPI	GGTGA	2 cut(s)	523, 824
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	663
BanII	GRGCYC	2 cut(s)	20, 826
BauI	CACGAG	1 cut(s)	836
BbsI	GAAGAC	2 cut(s)	150, 654
Bbv12I	GWGCWC	2 cut(s)	20, 826
BbvI	GCAGC	1 cut(s)	711
BccI	CCATC	3 cut(s)	568, 614, 913
BciT130I	CCWGG	3 cut(s)	293, 506, 732
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	4 cut(s)	131, 716, 717, 746
BcoDI	GTCTC	4 cut(s)	83, 258, 280, 721
BfaI	CTAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	597, 700
BlsI	GCNGC	2 cut(s)	598, 701
Bme1390I	CCNGG	7 cut(s)	131, 293, 506, 716, 717, 732, 746
Bme18I	GGWCC	1 cut(s)	719
BmeT110I	CYCGRG	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	2 cut(s)	665, 720
BmrFI	CCNGG	7 cut(s)	131, 293, 506, 716, 717, 732, 746
BmsI	GCATC	3 cut(s)	538, 571, 583
BpiI	GAAGAC	2 cut(s)	150, 654
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	499
BpuMI	CCSGG	4 cut(s)	131, 716, 717, 746
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	4 cut(s)	694, 714, 715, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	722
Bse3DI	GCAATG	3 cut(s)	169, 268, 475
BseBI	CCWGG	3 cut(s)	293, 506, 732
BseDI	CCNNGG	4 cut(s)	694, 714, 715, 901
BseGI	GGATG	2 cut(s)	463, 924
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	3 cut(s)	169, 268, 475
BseMII	CTCAG	6 cut(s)	104, 215, 269, 299, 426, 528
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	1 cut(s)	834
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	711
BshFI	GGCC	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	20, 826
BsiHKCI	CYCGRG	1 cut(s)	715
BsiSI	CCGG	4 cut(s)	105, 131, 716, 746
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	4 cut(s)	83, 258, 280, 721
BsmBI	CGTCTC	2 cut(s)	83, 280
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	715
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	20, 668, 826
Bsp143I	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
BspACI	CCGC	2 cut(s)	551, 597
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	6 cut(s)	105, 214, 268, 300, 427, 529
BspLI	GGNNCC	2 cut(s)	665, 720
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	3 cut(s)	338, 756, 934
BspQI	GCTCTTC	2 cut(s)	25, 831
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	3 cut(s)	169, 268, 475
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	694, 714, 715, 901
BssMI	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
BssSI	CACGAG	1 cut(s)	836
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	3 cut(s)	293, 506, 732
Bst4CI	ACNGT	1 cut(s)	881
Bst6I	CTCTTC	3 cut(s)	25, 515, 831
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	213, 704
BstDEI	CTNAG	7 cut(s)	113, 201, 255, 308, 396, 435, 537
BstF5I	GGATG	2 cut(s)	463, 924
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	7 cut(s)	65, 169, 220, 333, 385, 751, 929
BstMAI	GTCTC	4 cut(s)	83, 258, 280, 721
BstMBI	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	3 cut(s)	293, 506, 732
BstSCI	CCNGG	7 cut(s)	129, 291, 504, 714, 715, 730, 744
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	711
BstV2I	GAAGAC	2 cut(s)	150, 654
BstX2I	RGATCY	3 cut(s)	330, 382, 748
BstYI	RGATCY	3 cut(s)	330, 382, 748
BsuRI	GGCC	1 cut(s)	938
BtsCI	GGATG	2 cut(s)	463, 924
BtsIMutI	CAGTG	2 cut(s)	534, 729
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	213, 704
CaiI	CAGNNNCTG	1 cut(s)	660
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	719
Cfr9I	CCCGGG	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	934
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	7 cut(s)	113, 201, 255, 308, 396, 435, 537
DpnI	GATC	7 cut(s)	64, 168, 219, 332, 384, 750, 928
DpnII	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	25, 515, 831
EarI	CTCTTC	3 cut(s)	25, 515, 831
Ecl136II	GAGCTC	2 cut(s)	18, 824
Eco24I	GRGCYC	2 cut(s)	20, 826
Eco31I	GGTCTC	1 cut(s)	721
Eco32I	GATATC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	2 cut(s)	18, 824
Eco57I	CTGAAG	1 cut(s)	637
Eco88I	CYCGRG	1 cut(s)	715
EcoICRI	GAGCTC	2 cut(s)	18, 824
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	291, 504, 730
EcoRV	GATATC	1 cut(s)	737
EcoT38I	GRGCYC	2 cut(s)	20, 826
Esp3I	CGTCTC	2 cut(s)	83, 280
FaeI	CATG	1 cut(s)	937
FaiI	YATR	6 cut(s)	341, 406, 757, 759, 813, 935
FaqI	GGGAC	1 cut(s)	728
FatI	CATG	1 cut(s)	933
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	597, 700
FokI	GGATG	2 cut(s)	470, 931
FriOI	GRGCYC	2 cut(s)	20, 826
Fsp4HI	GCNGC	2 cut(s)	597, 700
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	597, 700
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	4 cut(s)	105, 131, 716, 746
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	1 cut(s)	937
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	3 cut(s)	4, 497, 554
HpaII	CCGG	4 cut(s)	105, 131, 716, 746
HphI	GGTGA	2 cut(s)	523, 824
Hpy188III	TCNNGA	2 cut(s)	189, 478
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	477, 790
HpyCH4III	ACNGT	1 cut(s)	881
HpyCH4IV	ACGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	7 cut(s)	113, 201, 255, 308, 396, 435, 537
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	937
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
LguI	GCTCTTC	2 cut(s)	25, 831
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	1 cut(s)	711
LweI	GCATC	3 cut(s)	538, 571, 583
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	7 cut(s)	64, 168, 219, 332, 384, 750, 928
MboI	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
MflI	RGATCY	3 cut(s)	330, 382, 748
MhlI	GDGCHC	3 cut(s)	20, 668, 826
MluCI	AATT	2 cut(s)	145, 151
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	701
MnlI	CCTC	7 cut(s)	108, 251, 704, 812, 840, 911, 916
MseI	TTAA	3 cut(s)	53, 462, 791
MspI	CCGG	4 cut(s)	105, 131, 716, 746
MspR9I	CCNGG	7 cut(s)	131, 293, 506, 716, 717, 732, 746
MvaI	CCWGG	3 cut(s)	293, 506, 732
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	4 cut(s)	131, 716, 717, 746
NdeII	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
NlaIII	CATG	1 cut(s)	937
NlaIV	GGNNCC	2 cut(s)	665, 720
NmeAIII	GCCGAG	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	25, 831
PfeI	GAWTC	2 cut(s)	4, 554
PflMI	CCANNNNNTGG	1 cut(s)	454
PfoI	TCCNGGA	2 cut(s)	291, 744
PkrI	GCNGC	2 cut(s)	598, 701
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	2 cut(s)	20, 826
Psp6I	CCWGG	3 cut(s)	291, 504, 730
PspGI	CCWGG	3 cut(s)	291, 504, 730
PspN4I	GGNNCC	2 cut(s)	665, 720
PspPI	GGNCC	1 cut(s)	719
PstNI	CAGNNNCTG	1 cut(s)	660
PsuI	RGATCY	3 cut(s)	330, 382, 748
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	2 cut(s)	20, 826
SapI	GCTCTTC	2 cut(s)	25, 831
SaqAI	TTAA	3 cut(s)	53, 462, 791
SatI	GCNGC	2 cut(s)	597, 700
Sau3AI	GATC	7 cut(s)	62, 166, 217, 330, 382, 748, 926
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	7 cut(s)	131, 293, 506, 716, 717, 732, 746
SduI	GDGCHC	3 cut(s)	20, 668, 826
SfaNI	GCATC	3 cut(s)	538, 571, 583
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	719
SmaI	CCCGGG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	2 cut(s)	145, 151
SsiI	CCGC	2 cut(s)	551, 597
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	2 cut(s)	20, 826
StyD4I	CCNGG	7 cut(s)	129, 291, 504, 714, 715, 730, 744
TaaI	ACNGT	1 cut(s)	881
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	3 cut(s)	149, 591, 929
TasI	AATT	2 cut(s)	145, 151
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	4, 554
Tru1I	TTAA	3 cut(s)	53, 462, 791
Tru9I	TTAA	3 cut(s)	53, 462, 791
TscAI	CASTG	2 cut(s)	541, 729
TseI	GCWGC	1 cut(s)	699
TspDTI	ATGAA	2 cut(s)	17, 774
TspMI	CCCGGG	1 cut(s)	715
TspRI	CASTG	2 cut(s)	541, 729
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	145, 151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	715
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.