AT5G06260

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008522
Physical Location & Seq
Reverse (-)
1902565 .. 1905277
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06260.1

Sequence Viewer

Length: 1275 bp
ATGGGAAATTCGAATTCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCTTTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTCCCTCGCTTCCAATTCTCAGAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACGCAGGAAAGATGATAAAATGACTTATGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGACGATGAGATTGCTGAGTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGTCAAGGTCTGATTTAGAGTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGAAGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATCTGATGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCTCATTCGTTCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGGATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCTTGTAGAGTGGAAGCTGTTGTATCACAGTTCCGTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATCAAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAAGGATATGTGTATGGAGGGTACGCCTCTCAACCTTGGGAGAGGTACAGCGATTTCTATGGAGACATGAAGTCTTTTCTTTTCCAGCTTAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAACATTCAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCGAATGGGATAGGATTTGGAGGTAAGATAAATCACTTTGGCCTGTTTATATCAGCAAGCTTCGATCAAGGCCAGACATTCGAATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGCCTCAAATGAACAAGACACCAAACATAACGCCATGAAAGGTACTGTTCTGGAGAGGTTTAAGGAAGATCGCAACATGCTCAAACTAGTCGGCATGGCAGGCAATTCAAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

424

Amino Acids

47.42

Weight (kDa)

5.45

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 215 - 384 7e-43 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 3 cut(s) 413, 459, 608
AclI AACGTT 1 cut(s) 1085
AcsI RAATTY 3 cut(s) 7, 13, 1119
AcuI CTGAAG 1 cut(s) 499
AfaI GTAC 6 cut(s) 143, 583, 738, 842, 866, 1201
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 5 cut(s) 382, 509, 754, 959, 1266
AhdI GACNNNNNGTC 1 cut(s) 889
AhlI ACTAGT 1 cut(s) 1243
AjnI CCWGG 3 cut(s) 153, 366, 592
Alw21I GWGCWC 2 cut(s) 530, 688
Alw26I GTCTC 4 cut(s) 103, 142, 583, 876
AlwNI CAGNNNCTG 1 cut(s) 522
Ama87I CYCGRG 2 cut(s) 577, 1096
AoxI GGCC 3 cut(s) 1033, 1063, 1158
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 3 cut(s) 7, 13, 1119
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 385, 686
AsuII TTCGAA 2 cut(s) 11, 1074
AvaI CYCGRG 2 cut(s) 577, 1096
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 12, 516
Bbv12I GWGCWC 2 cut(s) 530, 688
BbvI GCAGC 1 cut(s) 932
BccI CCATC 2 cut(s) 430, 476
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 3 cut(s) 155, 368, 594
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 103, 142, 583, 876
BcuI ACTAGT 1 cut(s) 1243
BfaI CTAG 1 cut(s) 1244
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 459, 921
BlsI GCNGC 2 cut(s) 460, 922
Bme1390I CCNGG 3 cut(s) 155, 368, 594
BmeRI GACNNNNNGTC 1 cut(s) 889
BmeT110I CYCGRG 2 cut(s) 577, 1096
BmrFI CCNGG 3 cut(s) 155, 368, 594
BmsI GCATC 4 cut(s) 400, 433, 619, 803
BpiI GAAGAC 2 cut(s) 12, 516
BpmI CTGGAG 2 cut(s) 960, 1229
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 2 cut(s) 11, 1074
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 3 cut(s) 556, 763, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 787, 943
Bse3DI GCAATG 2 cut(s) 130, 337
BseBI CCWGG 3 cut(s) 155, 368, 594
BseDI CCNNGG 3 cut(s) 556, 763, 854
BseGI GGATG 3 cut(s) 198, 325, 448
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 2 cut(s) 130, 337
BseMII CTCAG 5 cut(s) 77, 131, 161, 288, 390
BseNI ACTGG 2 cut(s) 787, 943
BseRI GAGGAG 1 cut(s) 696
BseXI GCAGC 1 cut(s) 932
BseYI CCCAGC 1 cut(s) 1143
BshFI GGCC 3 cut(s) 1035, 1065, 1160
BsiHKAI GWGCWC 2 cut(s) 530, 688
BsiHKCI CYCGRG 2 cut(s) 577, 1096
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 4 cut(s) 103, 142, 583, 876
BsmBI CGTCTC 2 cut(s) 103, 142
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 2 cut(s) 1082, 1145
BsnI GGCC 3 cut(s) 1035, 1065, 1160
Bso31I GGTCTC 1 cut(s) 583
BsoBI CYCGRG 2 cut(s) 577, 1096
Bsp119I TTCGAA 2 cut(s) 11, 1074
Bsp1286I GDGCHC 2 cut(s) 530, 688
Bsp143I GATC 5 cut(s) 28, 79, 244, 1057, 1225
BspACI CCGC 3 cut(s) 413, 459, 608
BspANI GGCC 3 cut(s) 1035, 1065, 1160
BspCNI CTCAG 5 cut(s) 76, 130, 162, 289, 391
BspQI GCTCTTC 1 cut(s) 693
BspT104I TTCGAA 2 cut(s) 11, 1074
BspTNI GGTCTC 1 cut(s) 583
BsrDI GCAATG 2 cut(s) 130, 337
BsrI ACTGG 2 cut(s) 787, 943
BssECI CCNNGG 3 cut(s) 556, 763, 854
BssMI GATC 5 cut(s) 28, 79, 244, 1057, 1225
BssT1I CCWWGG 1 cut(s) 854
Bst2UI CCWGG 3 cut(s) 155, 368, 594
Bst4CI ACNGT 4 cut(s) 586, 731, 743, 1204
Bst6I CTCTTC 3 cut(s) 98, 377, 693
BstBI TTCGAA 2 cut(s) 11, 1074
BstC8I GCNNGC 3 cut(s) 566, 1051, 1258
BstDEI CTNAG 6 cut(s) 63, 117, 170, 258, 297, 399
BstF5I GGATG 3 cut(s) 198, 325, 448
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 5 cut(s) 31, 82, 247, 1060, 1228
BstMAI GTCTC 4 cut(s) 103, 142, 583, 876
BstMBI GATC 5 cut(s) 28, 79, 244, 1057, 1225
BstMWI GCNNNNNNNGC 2 cut(s) 53, 1257
BstNI CCWGG 3 cut(s) 155, 368, 594
BstNSI RCATGY 1 cut(s) 1237
BstSCI CCNGG 3 cut(s) 153, 366, 592
BstV1I GCAGC 1 cut(s) 932
BstV2I GAAGAC 2 cut(s) 12, 516
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 3 cut(s) 1035, 1065, 1160
BtgZI GCGATG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 198, 325, 448
BtsIMutI CAGTG 3 cut(s) 396, 591, 780
Cac8I GCNNGC 3 cut(s) 566, 1051, 1258
CaiI CAGNNNCTG 1 cut(s) 522
CfoI GCGC 1 cut(s) 448
Csp6I GTAC 6 cut(s) 142, 582, 737, 841, 865, 1200
CviAII CATG 5 cut(s) 698, 886, 1192, 1234, 1252
CviQI GTAC 6 cut(s) 142, 582, 737, 841, 865, 1200
DdeI CTNAG 6 cut(s) 63, 117, 170, 258, 297, 399
DpnI GATC 5 cut(s) 30, 81, 246, 1059, 1227
DpnII GATC 5 cut(s) 28, 79, 244, 1057, 1225
DrdI GACNNNNNNGTC 1 cut(s) 134
DriI GACNNNNNGTC 1 cut(s) 889
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 98, 377, 693
Eam1105I GACNNNNNGTC 1 cut(s) 889
EarI CTCTTC 3 cut(s) 98, 377, 693
Ecl136II GAGCTC 1 cut(s) 686
Eco130I CCWWGG 1 cut(s) 854
Eco147I AGGCCT 1 cut(s) 1160
Eco24I GRGCYC 1 cut(s) 688
Eco31I GGTCTC 1 cut(s) 583
Eco32I GATATC 1 cut(s) 599
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 1 cut(s) 499
Eco88I CYCGRG 2 cut(s) 577, 1096
EcoICRI GAGCTC 1 cut(s) 686
EcoRI GAATTC 2 cut(s) 13, 1119
EcoRII CCWGG 3 cut(s) 153, 366, 592
EcoRV GATATC 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 854
Esp3I CGTCTC 2 cut(s) 103, 142
FaeI CATG 5 cut(s) 701, 889, 1195, 1237, 1255
FaqI GGGAC 1 cut(s) 590
FatI CATG 5 cut(s) 697, 885, 1191, 1233, 1251
FauI CCCGC 1 cut(s) 615
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 459, 921
FokI GGATG 3 cut(s) 205, 332, 455
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 2 cut(s) 459, 921
FspBI CTAG 1 cut(s) 1244
GlaI GCGC 1 cut(s) 447
GluI GCNGC 2 cut(s) 459, 921
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 2 cut(s) 960, 1229
HaeIII GGCC 3 cut(s) 1035, 1065, 1160
HhaI GCGC 1 cut(s) 448
Hin1II CATG 5 cut(s) 701, 889, 1195, 1237, 1255
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 3 cut(s) 562, 748, 1051
HinfI GANTC 3 cut(s) 359, 416, 1149
HphI GGTGA 2 cut(s) 385, 686
Hpy166II GTNNAC 1 cut(s) 739
Hpy188III TCNNGA 2 cut(s) 51, 1208
Hpy8I GTNNAC 1 cut(s) 739
HpyAV CCTTC 2 cut(s) 652, 815
HpyCH4III ACNGT 4 cut(s) 586, 731, 743, 1204
HpyCH4IV ACGT 2 cut(s) 135, 1085
HpyCH4V TGCA 1 cut(s) 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 1257
HpyF3I CTNAG 6 cut(s) 63, 117, 170, 258, 297, 399
HpySE526I ACGT 2 cut(s) 135, 1085
Hsp92II CATG 5 cut(s) 701, 889, 1195, 1237, 1255
HspAI GCGC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 5 cut(s) 28, 79, 244, 1057, 1225
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 2 cut(s) 683, 941
Lsp1109I GCAGC 1 cut(s) 932
LweI GCATC 4 cut(s) 400, 433, 619, 803
MaeI CTAG 1 cut(s) 1244
MaeII ACGT 2 cut(s) 135, 1085
MaeIII GTNAC 1 cut(s) 205
MalI GATC 5 cut(s) 30, 81, 246, 1059, 1227
MboI GATC 5 cut(s) 28, 79, 244, 1057, 1225
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 530, 688
MluCI AATT 6 cut(s) 7, 13, 112, 973, 1119, 1261
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 563
MseI TTAA 4 cut(s) 324, 653, 909, 1218
MslI CAYNNNNRTG 2 cut(s) 785, 1075
MspR9I CCNGG 3 cut(s) 155, 368, 594
Mva1269I GAATGC 2 cut(s) 1082, 1145
MvaI CCWGG 3 cut(s) 155, 368, 594
MwoI GCNNNNNNNGC 2 cut(s) 53, 1257
NdeII GATC 5 cut(s) 28, 79, 244, 1057, 1225
NlaIII CATG 5 cut(s) 701, 889, 1195, 1237, 1255
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 1237
NspV TTCGAA 2 cut(s) 11, 1074
PceI AGGCCT 1 cut(s) 1160
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 2 cut(s) 1082, 1145
PfeI GAWTC 2 cut(s) 416, 1149
PflMI CCANNNNNTGG 1 cut(s) 316
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 2 cut(s) 460, 922
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp124BI GAGCTC 1 cut(s) 688
Psp1406I AACGTT 1 cut(s) 1085
Psp6I CCWGG 3 cut(s) 153, 366, 592
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 3 cut(s) 153, 366, 592
PstNI CAGNNNCTG 1 cut(s) 522
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 6 cut(s) 143, 583, 738, 842, 866, 1201
RsaNI GTAC 6 cut(s) 142, 582, 737, 841, 865, 1200
RseI CAYNNNNRTG 2 cut(s) 785, 1075
SacI GAGCTC 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 324, 653, 909, 1218
SatI GCNGC 2 cut(s) 459, 921
Sau3AI GATC 5 cut(s) 28, 79, 244, 1057, 1225
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 155, 368, 594
SduI GDGCHC 2 cut(s) 530, 688
SfaNI GCATC 4 cut(s) 400, 433, 619, 803
SfuI TTCGAA 2 cut(s) 11, 1074
SmiMI CAYNNNNRTG 2 cut(s) 785, 1075
SpeI ACTAGT 1 cut(s) 1243
Sse9I AATT 6 cut(s) 7, 13, 112, 973, 1119, 1261
SseBI AGGCCT 1 cut(s) 1160
SsiI CCGC 3 cut(s) 413, 459, 608
SspMI CTAG 1 cut(s) 1244
SstI GAGCTC 1 cut(s) 688
StuI AGGCCT 1 cut(s) 1160
StyD4I CCNGG 3 cut(s) 153, 366, 592
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 4 cut(s) 586, 731, 743, 1204
TaiI ACGT 2 cut(s) 138, 1088
TaqI TCGA 4 cut(s) 11, 75, 1056, 1074
TasI AATT 6 cut(s) 7, 13, 112, 973, 1119, 1261
TatI WGTACW 1 cut(s) 581
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 2 cut(s) 416, 1149
Tru1I TTAA 4 cut(s) 324, 653, 909, 1218
Tru9I TTAA 4 cut(s) 324, 653, 909, 1218
TscAI CASTG 3 cut(s) 403, 591, 787
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 920
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 6 cut(s) 28, 255, 636, 902, 1182, 1208
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 3 cut(s) 403, 591, 787
Van91I CCANNNNNTGG 1 cut(s) 316
XapI RAATTY 3 cut(s) 7, 13, 1119
XceI RCATGY 1 cut(s) 1237
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.