Rh3AG196700

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008522
Physical Location & Seq
Reverse (-)
19190547 .. 19194501
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG196700.1

Sequence Viewer

Length: 978 bp
ATGGGCAACGCTCAGTCACCTCCTCACAAAGATCCTCGCTTTGCTTCTGCCTCCAGAGCTTTCACTCATACTGAGCTTCAAGATCTCAAGTCCCTGCTTGAGTCCTTGGCTGCTCAGTCACACAGCGATGGCCAATTCATCTCTCCCTCGGTTTTTCAGACTTATTTCGGGCTTCATGGTCGTCTTGGAGATAGAATGTTTGATTTAGTAACCCAGCAACGGAAAGACCAGAAGCTCACTTTTGAAGACCTGGTGGTAGCCAAAGGGACTTATGAGAAGGGAACAAGAGATGATATTGAAGAGTTCATATATAAATTGTTGGACCTAAACGGCGATGGCATTTTGGGGAGGTCTGATCTGGAAGGTGTTCTGGTTGCAATGTCTGAATACATATTCAAAACGAAAAACTCTGAACCTGGGTCAAGTACATATCGGGAAACTGTGAATGCATTTCTTAATGCTGCACGGCTTACAAAGCACGACGAAGGACATACTGAGGAAAGTTTGTCCTTTGAAGATTTCAGAACTTGGTGCACTCTTCTTCCTTCTGTCAGGAAGTTCCTTGGAAGCTTATTGATTCCACCTGATCAAGGAAGGCCAGGTTCTCAGGTTCCACGGTTATTGCAATTGGAAAACATTAATTCAAATATGATATTATTAAACGAGGTGTATGCCTGGCATATAGGAGGAATCCTTCCTCACCAAGAGCTGGGAGAATGGAAACTATTATACCATAGTGCTGTTAATGGTCTAAGCTTCAACACATTTGTGGGAAACATATCAAATGATAGAGGGCCAACTGTATTCATTATCAAGGATAAAGATGGTTATGTATATGGAGGTTATGCTTCCCAACCGTGGGAGAGGCATGGTGATTTCTATGGTGATCTGAAGTCATTTCTTTTCCAATTGTATCCGAAGGCATCTATATATAGGCCTACTGGAGCAAACACTAATCTACAATGGGTGAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

325

Amino Acids

36.68

Weight (kDa)

5.82

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 215 - 322 5.3e-27 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 709
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
AgsI TTSAA 7 cut(s) 80, 245, 299, 397, 515, 645, 760
AjnI CCWGG 4 cut(s) 249, 415, 598, 674
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 6 cut(s) 59, 76, 235, 570, 709, 756
AluI AGCT 6 cut(s) 59, 76, 235, 570, 709, 756
Alw21I GWGCWC 1 cut(s) 536
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 1 cut(s) 26
AoxI GGCC 4 cut(s) 130, 596, 794, 935
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 110, 461
AseI ATTAAT 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 322, 794
AsuHPI GGTGA 4 cut(s) 9, 692, 884, 896
AvaII GGWCC 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 2 cut(s) 97, 448
BccI CCATC 3 cut(s) 122, 329, 818
BceAI ACGGC 2 cut(s) 346, 482
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 4 cut(s) 251, 417, 600, 676
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 1 cut(s) 586
BfuI GTATCC 1 cut(s) 924
BglII AGATCT 1 cut(s) 82
BisI GCNGC 2 cut(s) 111, 462
BlsI GCNGC 2 cut(s) 112, 463
Bme1390I CCNGG 4 cut(s) 251, 417, 600, 676
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 322, 794
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 4 cut(s) 251, 417, 600, 676
BmsI GCATC 1 cut(s) 932
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 2 cut(s) 37, 963
BpuEI CTTGAG 2 cut(s) 71, 119
BsaJI CCNNGG 6 cut(s) 105, 147, 416, 562, 614, 857
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 4 cut(s) 251, 417, 600, 676
BseDI CCNNGG 6 cut(s) 105, 147, 416, 562, 614, 857
BseLI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 5 cut(s) 26, 63, 128, 486, 620
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 2 cut(s) 97, 448
BseYI CCCAGC 2 cut(s) 213, 709
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 4 cut(s) 132, 598, 796, 937
BsiHKAI GWGCWC 1 cut(s) 536
BslFI GGGAC 2 cut(s) 76, 280
BslI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
BsmFI GGGAC 2 cut(s) 76, 280
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 4 cut(s) 132, 598, 796, 937
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 5 cut(s) 31, 82, 355, 586, 886
BspANI GGCC 4 cut(s) 132, 598, 796, 937
BspCNI CTCAG 5 cut(s) 25, 64, 127, 487, 619
BspLI GGNNCC 1 cut(s) 612
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 6 cut(s) 105, 147, 416, 562, 614, 857
BssMI GATC 5 cut(s) 31, 82, 355, 586, 886
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2UI CCWGG 4 cut(s) 251, 417, 600, 676
Bst4CI ACNGT 4 cut(s) 442, 618, 802, 858
Bst6I CTCTTC 2 cut(s) 294, 543
BstDEI CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
BstDSI CCRYGG 2 cut(s) 614, 857
BstENI CCTNNNNNAGG 1 cut(s) 588
BstKTI GATC 5 cut(s) 34, 85, 358, 589, 889
BstMBI GATC 5 cut(s) 31, 82, 355, 586, 886
BstMWI GCNNNNNNNGC 2 cut(s) 56, 475
BstNI CCWGG 4 cut(s) 251, 417, 600, 676
BstSCI CCNGG 4 cut(s) 249, 415, 598, 674
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 2 cut(s) 97, 448
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 31, 82
BstYI RGATCY 2 cut(s) 31, 82
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 4 cut(s) 132, 598, 796, 937
BtgI CCRYGG 2 cut(s) 614, 857
BtgZI GCGATG 2 cut(s) 141, 348
Cfr13I GGNCC 2 cut(s) 322, 794
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 2 cut(s) 176, 869
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
DpnI GATC 5 cut(s) 33, 84, 357, 588, 888
DpnII GATC 5 cut(s) 31, 82, 355, 586, 886
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 294, 543
EarI CTCTTC 2 cut(s) 294, 543
Eco130I CCWWGG 2 cut(s) 105, 562
Eco147I AGGCCT 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 911
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoRII CCWGG 4 cut(s) 249, 415, 598, 674
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 2 cut(s) 105, 562
FaeI CATG 2 cut(s) 179, 872
FaqI GGGAC 2 cut(s) 76, 280
FatI CATG 2 cut(s) 175, 868
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 111, 462
Fsp4HI GCNGC 2 cut(s) 111, 462
GluI GCNGC 2 cut(s) 111, 462
GsaI CCCAGC 2 cut(s) 217, 713
GsuI CTGGAG 2 cut(s) 37, 963
HaeIII GGCC 4 cut(s) 132, 598, 796, 937
Hin1II CATG 2 cut(s) 179, 872
HindIII AAGCTT 2 cut(s) 568, 754
HinfI GANTC 3 cut(s) 101, 577, 690
HphI GGTGA 4 cut(s) 9, 692, 884, 896
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 8 cut(s) 159, 355, 385, 412, 524, 891, 918, 977
Hpy188III TCNNGA 5 cut(s) 54, 80, 359, 434, 553
Hpy8I GTNNAC 1 cut(s) 534
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 7 cut(s) 271, 356, 479, 555, 588, 704, 913
HpyCH4III ACNGT 4 cut(s) 442, 618, 802, 858
HpyCH4V TGCA 5 cut(s) 377, 449, 464, 534, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 475
HpyF3I CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
Hsp92II CATG 2 cut(s) 179, 872
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 31, 82, 355, 586, 886
LmnI GCTCC 1 cut(s) 944
Lsp1109I GCAGC 2 cut(s) 97, 448
LweI GCATC 1 cut(s) 932
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 15, 117, 208
MalI GATC 5 cut(s) 33, 84, 357, 588, 888
MboI GATC 5 cut(s) 31, 82, 355, 586, 886
MboII GAAGA 5 cut(s) 257, 311, 527, 530, 533
MfeI CAATTG 2 cut(s) 626, 908
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 1 cut(s) 536
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 5 cut(s) 134, 314, 626, 640, 908
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 132
MseI TTAA 4 cut(s) 456, 639, 659, 744
MslI CAYNNNNRTG 2 cut(s) 126, 767
Msp20I TGGCCA 1 cut(s) 132
MspR9I CCNGG 4 cut(s) 251, 417, 600, 676
MunI CAATTG 2 cut(s) 626, 908
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 4 cut(s) 251, 417, 600, 676
MwoI GCNNNNNNNGC 2 cut(s) 56, 475
NdeII GATC 5 cut(s) 31, 82, 355, 586, 886
NlaIII CATG 2 cut(s) 179, 872
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 2 cut(s) 15, 117
NsiI ATGCAT 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 767
PceI AGGCCT 1 cut(s) 937
PctI GAATGC 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 577, 690
PflMI CCANNNNNTGG 1 cut(s) 709
PkrI GCNGC 2 cut(s) 112, 463
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 249, 415, 598, 674
PspFI CCCAGC 2 cut(s) 213, 709
PspGI CCWGG 4 cut(s) 249, 415, 598, 674
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 2 cut(s) 322, 794
PsuI RGATCY 2 cut(s) 31, 82
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 2 cut(s) 126, 767
SaqAI TTAA 4 cut(s) 456, 639, 659, 744
SatI GCNGC 2 cut(s) 111, 462
Sau3AI GATC 5 cut(s) 31, 82, 355, 586, 886
Sau96I GGNCC 2 cut(s) 322, 794
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 4 cut(s) 251, 417, 600, 676
SduI GDGCHC 1 cut(s) 536
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 1 cut(s) 932
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 126, 767
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 5 cut(s) 134, 314, 626, 640, 908
SseBI AGGCCT 1 cut(s) 937
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 4 cut(s) 249, 415, 598, 674
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 4 cut(s) 442, 618, 802, 858
TasI AATT 5 cut(s) 134, 314, 626, 640, 908
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 2 cut(s) 577, 690
Tru1I TTAA 4 cut(s) 456, 639, 659, 744
Tru9I TTAA 4 cut(s) 456, 639, 659, 744
TseFI GTSAC 2 cut(s) 15, 117
TseI GCWGC 2 cut(s) 110, 461
Tsp45I GTSAC 2 cut(s) 15, 117
TspDTI ATGAA 4 cut(s) 127, 164, 295, 796
TspGWI ACGGA 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 709
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 322
VspI ATTAAT 1 cut(s) 639
XagI CCTNNNNNAGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.