RLG00000023861

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008522
Physical Location & Seq
Forward (+)
29287553 .. 29290996
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023861

Sequence Viewer

Length: 1272 bp
ATGGGCAACGCTCAGTCACCTCCTCACAAAGATCCTCGCTTTGCTTCTGCCTCCAGAGCTTTCACTCATACTGAGCTTGAAGATCTCAAGTCCCTCCTTGAGTCCTTGGCTGCTCAGTCACATAGCGACGCCCAGTTCATCTCTCCCTCGGGTTTTCAGACTTATTTCGGGCTTCATGGTCCTCTTGGAGATAGGATGTTTGATTTAGTAACCCAGCAACGGAAAGACCAGAAGCTCACTTTTGAGGACCTGGTGGTAGCCAAAGGGGCTTATGAGAAGGGAACAAGAGATGATATTGAAGAGTTCATTTATAAATTGTTGGACCTAAACGGCGATGGCATTTTGGGGAGGTCTGATCTGGAAGGTGTTCTGGTTGCAATGTTTGAATACATATTCAAAACGAAAAACTCTGAACCTGGATCAATTACATATCGGGAAACTGTGAATGCATTTCTTAATGCTGCACGGCTTACAAAGCACGACGAAGGACATACTGAGGAAAGCTTGTCCTTTGAAGATTTCAGAACTTGGTGCACTCTTCTCCCTTCTGTCAGGAAGTTCCTTGGAAGCTTATTGATTCCACCTGATCAAGGAAGGCCAGGTTCTCAGGTTCCACGGTTATTGCAATTGGAAAACATCAATTCAAATATGATATTATTAAACGAGGTGTATGCCTGGCATATAGGAGGAATCCTTCCTCACCAAGAGCTGGGAGAATGGAAACTATTATACCATAGTGCTGTTAATGGTCTGAGCTTCAACACATTTGTGGGAAACATATCAAATGATAAAGGGCCAACTGTATTCATTATCAAGGATAAAGACGGTTATGTATATGGAGGTTATGCTTCCCAACCGTGGGAGAGGCATGGTGATTTCTATGGTGATCTGAAGTCATTTCTTTTCCAATTGTATCCGAAGGCATCTATATATAGACCTACTGGAGCAAACACTAATCTACAATGGTGTGCTGTGAATTTCGGTTCAGAGAGCATCCCAAATGGTATTGGTTTTGGAGGAAAGGTGAATCACTTTGGTCTCTTCCTTTCAGCGAACTTTGATCAGGGGCACACTTTCTCGTGTACCACATTTGGTTCCCCTTGCCTCTCCAAGAGCAGCCGAATATGCCCGGAAGTAATAGAATGCTGGGGAGTTGTTAGGAAAGCAGCAGATGAAGAAAAACAGGACGGTGCTAAAGGCACTGTATTGGAGAGGTTTAAGGAAGATCGTCATATGCTCAACATGGTTGGGCTCGCAAATTCCAGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

424

Amino Acids

47.18

Weight (kDa)

5.66

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 215 - 385 1.8e-42 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccB7I CCANNNNNTGG 1 cut(s) 709
AclWI GGATC 2 cut(s) 26, 427
AcsI RAATTY 2 cut(s) 976, 1258
AcuI CTGAAG 1 cut(s) 911
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 1084
AfiI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
AgsI TTSAA 7 cut(s) 80, 299, 386, 397, 515, 645, 760
AjnI CCWGG 4 cut(s) 249, 415, 598, 674
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 7 cut(s) 59, 76, 235, 504, 570, 709, 756
AluI AGCT 7 cut(s) 59, 76, 235, 504, 570, 709, 756
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 1 cut(s) 1043
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 2 cut(s) 26, 427
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 2 cut(s) 596, 794
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 4 cut(s) 110, 461, 1116, 1166
ApoI RAATTY 2 cut(s) 976, 1258
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 4 cut(s) 179, 247, 322, 794
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 5 cut(s) 9, 692, 884, 896, 1036
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 3 cut(s) 179, 247, 322
BaeGI GKGCMC 2 cut(s) 536, 1071
BanII GRGCYC 1 cut(s) 1254
BauI CACGAG 1 cut(s) 1078
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 4 cut(s) 97, 448, 1128, 1178
BccI CCATC 1 cut(s) 329
BceAI ACGGC 2 cut(s) 346, 482
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 4 cut(s) 251, 417, 600, 676
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 2 cut(s) 586, 1060
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 1 cut(s) 1043
BfuI GTATCC 1 cut(s) 924
BglI GCCNNNNNGGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 111, 462, 1117, 1167
BlsI GCNGC 4 cut(s) 112, 463, 1118, 1168
Bme1390I CCNGG 5 cut(s) 251, 417, 600, 676, 1130
Bme18I GGWCC 3 cut(s) 179, 247, 322
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 4 cut(s) 179, 247, 322, 794
BmiI GGNNCC 2 cut(s) 612, 1096
BmrFI CCNGG 5 cut(s) 251, 417, 600, 676, 1130
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 932, 1002
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 2 cut(s) 37, 963
BpuEI CTTGAG 2 cut(s) 71, 119
BpuMI CCSGG 1 cut(s) 1130
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 5 cut(s) 105, 147, 562, 614, 857
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
Bse1I ACTGG 2 cut(s) 133, 946
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 4 cut(s) 251, 417, 600, 676
BseDI CCNNGG 5 cut(s) 105, 147, 562, 614, 857
BseGI GGATG 2 cut(s) 201, 993
BseLI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 6 cut(s) 26, 63, 128, 486, 620, 743
BseNI ACTGG 2 cut(s) 133, 946
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 2 cut(s) 536, 1071
BseXI GCAGC 4 cut(s) 97, 448, 1128, 1178
BseYI CCCAGC 3 cut(s) 213, 709, 1146
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 2 cut(s) 598, 796
BsiHKAI GWGCWC 1 cut(s) 536
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 1130
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 5 cut(s) 219, 590, 709, 858, 859
BsmAI GTCTC 1 cut(s) 1043
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 2 cut(s) 451, 1148
BsnI GGCC 2 cut(s) 598, 796
Bso31I GGTCTC 1 cut(s) 1043
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 536, 1071, 1254
Bsp143I GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
BspANI GGCC 2 cut(s) 598, 796
BspCNI CTCAG 6 cut(s) 25, 64, 127, 487, 619, 744
BspLI GGNNCC 2 cut(s) 612, 1096
BspPI GGATC 2 cut(s) 26, 427
BspTNI GGTCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 133, 946
BssECI CCNNGG 5 cut(s) 105, 147, 562, 614, 857
BssMI GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 1078
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2BI CACGAG 1 cut(s) 1078
Bst2UI CCWGG 4 cut(s) 251, 417, 600, 676
Bst4CI ACNGT 7 cut(s) 442, 618, 802, 827, 858, 1190, 1204
Bst6I CTCTTC 3 cut(s) 294, 543, 1046
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 1254
BstDEI CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
BstDSI CCRYGG 2 cut(s) 614, 857
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 201, 993
BstKTI GATC 8 cut(s) 34, 85, 358, 422, 589, 889, 1063, 1228
BstMAI GTCTC 1 cut(s) 1043
BstMBI GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 56, 266, 475, 1125
BstNI CCWGG 4 cut(s) 251, 417, 600, 676
BstSCI CCNGG 5 cut(s) 249, 415, 598, 674, 1128
BstSLI GKGCMC 2 cut(s) 536, 1071
BstV1I GCAGC 4 cut(s) 97, 448, 1128, 1178
BstX2I RGATCY 2 cut(s) 31, 82
BstYI RGATCY 2 cut(s) 31, 82
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 2 cut(s) 598, 796
BtgI CCRYGG 2 cut(s) 614, 857
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 201, 993
BtsIMutI CAGTG 1 cut(s) 1200
Cac8I GCNNGC 1 cut(s) 1254
Cfr13I GGNCC 4 cut(s) 179, 247, 322, 794
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 1083
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 3 cut(s) 176, 869, 1243
CviQI GTAC 1 cut(s) 1083
DdeI CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
DpnI GATC 8 cut(s) 33, 84, 357, 421, 588, 888, 1062, 1227
DpnII GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
Eam1104I CTCTTC 3 cut(s) 294, 543, 1046
EarI CTCTTC 3 cut(s) 294, 543, 1046
Eco130I CCWWGG 2 cut(s) 105, 562
Eco24I GRGCYC 1 cut(s) 1254
Eco31I GGTCTC 1 cut(s) 1043
Eco47I GGWCC 3 cut(s) 179, 247, 322
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 249, 415, 598, 674
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 1254
ErhI CCWWGG 2 cut(s) 105, 562
FaeI CATG 3 cut(s) 179, 872, 1246
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 175, 868, 1242
FauNDI CATATG 1 cut(s) 1233
FbaI TGATCA 2 cut(s) 586, 1060
Fnu4HI GCNGC 4 cut(s) 111, 462, 1117, 1167
FokI GGATG 2 cut(s) 208, 980
FriOI GRGCYC 1 cut(s) 1254
Fsp4HI GCNGC 4 cut(s) 111, 462, 1117, 1167
GluI GCNGC 4 cut(s) 111, 462, 1117, 1167
GsaI CCCAGC 3 cut(s) 217, 713, 1150
GsuI CTGGAG 2 cut(s) 37, 963
HaeIII GGCC 2 cut(s) 598, 796
HapII CCGG 1 cut(s) 1130
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 179, 872, 1246
HindIII AAGCTT 2 cut(s) 502, 568
HinfI GANTC 4 cut(s) 101, 577, 690, 1027
HpaII CCGG 1 cut(s) 1130
HphI GGTGA 5 cut(s) 9, 692, 884, 896, 1036
Hpy166II GTNNAC 2 cut(s) 534, 1083
Hpy188I TCNGA 8 cut(s) 159, 355, 412, 524, 753, 891, 918, 988
Hpy188III TCNNGA 4 cut(s) 54, 359, 434, 553
Hpy8I GTNNAC 2 cut(s) 534, 1083
Hpy99I CGWCG 2 cut(s) 131, 485
HpyAV CCTTC 7 cut(s) 271, 356, 479, 555, 588, 704, 913
HpyCH4III ACNGT 7 cut(s) 442, 618, 802, 827, 858, 1190, 1204
HpyCH4V TGCA 5 cut(s) 377, 449, 464, 534, 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 266, 475, 1125
HpyF3I CTNAG 6 cut(s) 12, 72, 114, 495, 606, 752
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 179, 872, 1246
Ksp22I TGATCA 2 cut(s) 586, 1060
Kzo9I GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
LmnI GCTCC 1 cut(s) 944
Lsp1109I GCAGC 4 cut(s) 97, 448, 1128, 1178
LweI GCATC 2 cut(s) 932, 1002
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 15, 117, 208
MalI GATC 8 cut(s) 33, 84, 357, 421, 588, 888, 1062, 1227
MboI GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
MboII GAAGA 7 cut(s) 92, 311, 527, 530, 1033, 1187, 1235
MfeI CAATTG 2 cut(s) 626, 908
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 3 cut(s) 536, 1071, 1254
MluCI AATT 7 cut(s) 314, 423, 626, 640, 908, 976, 1258
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 4 cut(s) 456, 659, 744, 1218
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 1 cut(s) 1130
MspR9I CCNGG 5 cut(s) 251, 417, 600, 676, 1130
MunI CAATTG 2 cut(s) 626, 908
Mva1269I GAATGC 2 cut(s) 451, 1148
MvaI CCWGG 4 cut(s) 251, 417, 600, 676
MwoI GCNNNNNNNGC 4 cut(s) 56, 266, 475, 1125
NciI CCSGG 1 cut(s) 1130
NdeI CATATG 1 cut(s) 1233
NdeII GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
NlaIII CATG 3 cut(s) 179, 872, 1246
NlaIV GGNNCC 2 cut(s) 612, 1096
NmuCI GTSAC 2 cut(s) 15, 117
NsiI ATGCAT 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 767
PctI GAATGC 2 cut(s) 451, 1148
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 577, 690, 1027
PflMI CCANNNNNTGG 1 cut(s) 709
PkrI GCNGC 4 cut(s) 112, 463, 1118, 1168
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 247
PsiI TTATAA 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 4 cut(s) 249, 415, 598, 674
PspFI CCCAGC 3 cut(s) 213, 709, 1146
PspGI CCWGG 4 cut(s) 249, 415, 598, 674
PspN4I GGNNCC 2 cut(s) 612, 1096
PspPI GGNCC 4 cut(s) 179, 247, 322, 794
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 2 cut(s) 31, 82
RsaI GTAC 1 cut(s) 1084
RsaNI GTAC 1 cut(s) 1083
RseI CAYNNNNRTG 1 cut(s) 767
SaqAI TTAA 4 cut(s) 456, 659, 744, 1218
SatI GCNGC 4 cut(s) 111, 462, 1117, 1167
Sau3AI GATC 8 cut(s) 31, 82, 355, 419, 586, 886, 1060, 1225
Sau96I GGNCC 4 cut(s) 179, 247, 322, 794
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 5 cut(s) 251, 417, 600, 676, 1130
SduI GDGCHC 3 cut(s) 536, 1071, 1254
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 2 cut(s) 932, 1002
SinI GGWCC 3 cut(s) 179, 247, 322
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 7 cut(s) 314, 423, 626, 640, 908, 976, 1258
StyD4I CCNGG 5 cut(s) 249, 415, 598, 674, 1128
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 7 cut(s) 442, 618, 802, 827, 858, 1190, 1204
TasI AATT 7 cut(s) 314, 423, 626, 640, 908, 976, 1258
TfiI GAWTC 3 cut(s) 577, 690, 1027
Tru1I TTAA 4 cut(s) 456, 659, 744, 1218
Tru9I TTAA 4 cut(s) 456, 659, 744, 1218
TscAI CASTG 1 cut(s) 1207
TseFI GTSAC 2 cut(s) 15, 117
TseI GCWGC 4 cut(s) 110, 461, 1116, 1166
Tsp45I GTSAC 2 cut(s) 15, 117
TspDTI ATGAA 5 cut(s) 127, 164, 295, 796, 1188
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 1207
Van91I CCANNNNNTGG 1 cut(s) 709
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 3 cut(s) 179, 247, 322
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 2 cut(s) 976, 1258
XmnI GAANNNNTTC 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.