Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003093.1

Orthogroup ID

OG0008522

Physical Location & Seq

Genomic Coordinates Reverse (-)

122606 .. 127730

Gene Structure 5125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003093.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

atgaaattaagggacaagattcttgataacgaccctctcaattctttgaaggtttgcgtgtcacaccccataccttatgttttgaggtttgagaaggtagtgcgcgggacttatgagaagggaacaagagatgatattgaagagttcatatataaattgttggacctaaacggcgatggcattttggggagaaccaggaaagcagaaaagatgggcaacgctcagtcacctcctcacaaagatcctcgctttgcttctgcctccagagctttcactcatactgagcttgaagatctcaagtccctgcttgagtccttggctgctcagtcacacagcgatggccaattcatctctccctcggtttttcagacttatttcgggcttcatggtcctcttggagataggatgtttgatttagtaacccagcaacggaaagaccagaagctcacttttcaagacctggtggtagccaaagggacttatgagaagggaacaagagatgatattgaagagttcatatataaattgttggacctaaacggcgatggcattttggggaggtctgatctggaaggtgttctggttgcaatgtttgaatacatattcaaaacgaaaaactctgaacctggatcaagtacatatcgggaaactgtgaatgcatttcttaatgctgcacggcttacaaagcacgacgaaggacatactgaggaaagtttgtcctttgaagatttcggaacttggtgcactcttcttccttctgtcaggaagttccttggaagcttattgattccacctgatcaaggaaggccaggttctcaggttccacggttattgcaattggaaaacattaattcaaatatgatattattaaatgaggtgtatgcctggcatataggaggaatccttcctcaccaagagctgggagaatggaaactattataccatagtgctgttaatggtctgagcttcaacacatttgtgggaaacatatcaaatgatagagggccaactgtattcattatcaaggataaagatggttatgtatatggaggttatgcttcccaaccgtgggagaggcatggtgatttctatggtgatctgaagtcatttcttttccaattgtatccgaaggcatctatatataggcctactggagcaaacactaatctacaatggtgtgctgtgaatttcggttcagagagcatcccaaatggtattggttttggaggaaaggtgaatcactttggtctcttcctttcggcgaactttgatcagggtcacactttctcgtgtaccacatttggttctccttgcctctccaagaccagccgaatatgcccggaagtaatagaatgctggggagctgttaggaaagcagcagatgaagaaaaactggatggtgctaaaggcactgtattggagaggtttaaggaagatcgtcatatgctcaacatggttgggctcgcaaattccagcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

493

Amino Acids

55.22

Weight (kDa)

5.91

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45243 AT4G34070 AT5G06260 AT5G06260 AT5G06260
fragaria_vesca	FvH4_6g19780
malus_domestica	MD14G1033800.v1.1
prunus_persica	Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1
pyrus_communis	pycom14g02980
rosa_chinensis	RchiOBHm_Chr3g0475131
rosa_laevigata	RLG00000023861
rosa_multiflora	Rmu_sc0003093.1_g000026 Rmu_sc0040867.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406540
rosa_rugosa	Rorug03G0146900
rosa_samantha	Rh3AG196700 Rh3BG226700 Rh3DG222200
rosa_wichuraiana	Rw3G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	919
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	236, 637
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	1186, 1468
AcuI	CTGAAG	1 cut(s)	1121
AfaI	GTAC	2 cut(s)	637, 1294
AfiI	CCNNNNNNNGG	5 cut(s)	429, 800, 919, 1068, 1069
AjnI	CCWGG	5 cut(s)	194, 459, 625, 808, 884
AleI	CACNNNNGTG	1 cut(s)	977
AluBI	AGCT	7 cut(s)	269, 286, 445, 780, 919, 966, 1364
AluI	AGCT	7 cut(s)	269, 286, 445, 780, 919, 966, 1364
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	1 cut(s)	1253
Alw44I	GTGCAC	1 cut(s)	742
AlwI	GGATC	2 cut(s)	236, 637
AoxI	GGCC	4 cut(s)	340, 806, 1004, 1145
ApaLI	GTGCAC	1 cut(s)	742
ApeKI	GCWGC	3 cut(s)	320, 671, 1376
ApoI	RAATTY	2 cut(s)	1186, 1468
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	4 cut(s)	163, 389, 532, 1004
AsuC2I	CCSGG	1 cut(s)	1340
AsuHPI	GGTGA	5 cut(s)	219, 902, 1094, 1106, 1246
AvaII	GGWCC	3 cut(s)	163, 389, 532
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	1464
BauI	CACGAG	1 cut(s)	1288
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	307, 658, 1388
BccI	CCATC	6 cut(s)	170, 205, 332, 539, 1028, 1391
BceAI	ACGGC	3 cut(s)	187, 556, 692
BciT130I	CCWGG	5 cut(s)	196, 461, 627, 810, 886
BciVI	GTATCC	1 cut(s)	1134
BclI	TGATCA	2 cut(s)	796, 1270
BcnI	CCSGG	1 cut(s)	1340
BcoDI	GTCTC	1 cut(s)	1253
BfuI	GTATCC	1 cut(s)	1134
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	3 cut(s)	321, 672, 1377
BlsI	GCNGC	3 cut(s)	322, 673, 1378
Bme1390I	CCNGG	6 cut(s)	196, 461, 627, 810, 886, 1340
Bme18I	GGWCC	3 cut(s)	163, 389, 532
BmgT120I	GGNCC	4 cut(s)	163, 389, 532, 1004
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	6 cut(s)	196, 461, 627, 810, 886, 1340
BmsI	GCATC	2 cut(s)	1142, 1212
BpmI	CTGGAG	2 cut(s)	247, 1173
BpuEI	CTTGAG	2 cut(s)	281, 329
BpuMI	CCSGG	1 cut(s)	1340
BsaI	GGTCTC	1 cut(s)	1253
BsaJI	CCNNGG	5 cut(s)	315, 357, 772, 824, 1067
BsaXI	ACNNNNNCTCC	2 cut(s)	1218, 1248
Bsc4I	CCNNNNNNNGG	5 cut(s)	429, 800, 919, 1068, 1069
Bse1I	ACTGG	2 cut(s)	1156, 1398
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	5 cut(s)	196, 461, 627, 810, 886
BseDI	CCNNGG	5 cut(s)	315, 357, 772, 824, 1067
BseGI	GGATG	3 cut(s)	411, 1203, 1402
BseLI	CCNNNNNNNGG	5 cut(s)	429, 800, 919, 1068, 1069
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	6 cut(s)	236, 273, 338, 696, 830, 953
BseNI	ACTGG	2 cut(s)	1156, 1398
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	3 cut(s)	307, 658, 1388
BseYI	CCCAGC	3 cut(s)	423, 919, 1356
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	342, 808, 1006, 1147
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	1340
BslFI	GGGAC	4 cut(s)	26, 121, 286, 490
BslI	CCNNNNNNNGG	5 cut(s)	429, 800, 919, 1068, 1069
BsmAI	GTCTC	1 cut(s)	1253
BsmFI	GGGAC	4 cut(s)	26, 121, 286, 490
BsmI	GAATGC	2 cut(s)	661, 1358
BsnI	GGCC	4 cut(s)	342, 808, 1006, 1147
Bso31I	GGTCTC	1 cut(s)	1253
Bsp1286I	GDGCHC	2 cut(s)	746, 1464
Bsp143I	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	4 cut(s)	342, 808, 1006, 1147
BspCNI	CTCAG	6 cut(s)	235, 274, 337, 697, 829, 954
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	822
BspPI	GGATC	2 cut(s)	236, 637
BspTNI	GGTCTC	1 cut(s)	1253
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	1156, 1398
BssECI	CCNNGG	5 cut(s)	315, 357, 772, 824, 1067
BssMI	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
BssSI	CACGAG	1 cut(s)	1288
BssT1I	CCWWGG	2 cut(s)	315, 772
Bst2BI	CACGAG	1 cut(s)	1288
Bst2UI	CCWGG	5 cut(s)	196, 461, 627, 810, 886
Bst4CI	ACNGT	5 cut(s)	652, 828, 1012, 1068, 1414
Bst6I	CTCTTC	4 cut(s)	135, 504, 753, 1256
BstC8I	GCNNGC	1 cut(s)	1464
BstDEI	CTNAG	6 cut(s)	222, 282, 324, 705, 816, 962
BstDSI	CCRYGG	2 cut(s)	824, 1067
BstENI	CCTNNNNNAGG	1 cut(s)	798
BstF5I	GGATG	3 cut(s)	411, 1203, 1402
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	8 cut(s)	244, 295, 568, 632, 799, 1099, 1273, 1438
BstMAI	GTCTC	1 cut(s)	1253
BstMBI	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 685, 1335
BstNI	CCWGG	5 cut(s)	196, 461, 627, 810, 886
BstSCI	CCNGG	6 cut(s)	194, 459, 625, 808, 884, 1338
BstSLI	GKGCMC	1 cut(s)	746
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	307, 658, 1388
BstX2I	RGATCY	2 cut(s)	241, 292
BstYI	RGATCY	2 cut(s)	241, 292
BsuI	GTATCC	1 cut(s)	1134
BsuRI	GGCC	4 cut(s)	342, 808, 1006, 1147
BtgI	CCRYGG	2 cut(s)	824, 1067
BtgZI	GCGATG	3 cut(s)	189, 351, 558
BtsCI	GGATG	3 cut(s)	411, 1203, 1402
BtsIMutI	CAGTG	1 cut(s)	1410
Cac8I	GCNNGC	1 cut(s)	1464
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	4 cut(s)	163, 389, 532, 1004
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	636, 1293
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	3 cut(s)	386, 1079, 1453
CviQI	GTAC	2 cut(s)	636, 1293
DdeI	CTNAG	6 cut(s)	222, 282, 324, 705, 816, 962
DpnI	GATC	8 cut(s)	243, 294, 567, 631, 798, 1098, 1272, 1437
DpnII	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	4 cut(s)	135, 504, 753, 1256
EarI	CTCTTC	4 cut(s)	135, 504, 753, 1256
Eco130I	CCWWGG	2 cut(s)	315, 772
Eco147I	AGGCCT	1 cut(s)	1147
Eco24I	GRGCYC	1 cut(s)	1464
Eco31I	GGTCTC	1 cut(s)	1253
Eco47I	GGWCC	3 cut(s)	163, 389, 532
Eco57I	CTGAAG	1 cut(s)	1121
EcoNI	CCTNNNNNAGG	1 cut(s)	798
EcoRII	CCWGG	5 cut(s)	194, 459, 625, 808, 884
EcoT14I	CCWWGG	2 cut(s)	315, 772
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	1464
ErhI	CCWWGG	2 cut(s)	315, 772
FaeI	CATG	3 cut(s)	389, 1082, 1456
FaqI	GGGAC	4 cut(s)	26, 121, 286, 490
FatI	CATG	3 cut(s)	385, 1078, 1452
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	1 cut(s)	1443
FbaI	TGATCA	2 cut(s)	796, 1270
Fnu4HI	GCNGC	3 cut(s)	321, 672, 1377
FokI	GGATG	3 cut(s)	418, 1190, 1409
FriOI	GRGCYC	1 cut(s)	1464
Fsp4HI	GCNGC	3 cut(s)	321, 672, 1377
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	321, 672, 1377
GsaI	CCCAGC	3 cut(s)	427, 923, 1360
GsuI	CTGGAG	2 cut(s)	247, 1173
HaeIII	GGCC	4 cut(s)	342, 808, 1006, 1147
HapII	CCGG	1 cut(s)	1340
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	389, 1082, 1456
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	5 cut(s)	19, 311, 787, 900, 1237
HpaII	CCGG	1 cut(s)	1340
HphI	GGTGA	5 cut(s)	219, 902, 1094, 1106, 1246
Hpy166II	GTNNAC	2 cut(s)	744, 1293
Hpy188I	TCNGA	8 cut(s)	369, 565, 622, 734, 963, 1101, 1128, 1198
Hpy188III	TCNNGA	6 cut(s)	23, 264, 455, 569, 644, 763
Hpy8I	GTNNAC	2 cut(s)	744, 1293
Hpy99I	CGWCG	1 cut(s)	695
HpyCH4III	ACNGT	5 cut(s)	652, 828, 1012, 1068, 1414
HpyCH4V	TGCA	5 cut(s)	587, 659, 674, 744, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 685, 1335
HpyF3I	CTNAG	6 cut(s)	222, 282, 324, 705, 816, 962
Hsp92II	CATG	3 cut(s)	389, 1082, 1456
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	2 cut(s)	796, 1270
Kzo9I	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
LmnI	GCTCC	2 cut(s)	1154, 1361
Lsp1109I	GCAGC	3 cut(s)	307, 658, 1388
LweI	GCATC	2 cut(s)	1142, 1212
MabI	ACCWGGT	1 cut(s)	459
MaeIII	GTNAC	5 cut(s)	60, 225, 327, 418, 1277
MalI	GATC	8 cut(s)	243, 294, 567, 631, 798, 1098, 1272, 1437
MboI	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
MboII	GAAGA	9 cut(s)	152, 302, 521, 737, 740, 743, 1243, 1397, 1445
MfeI	CAATTG	2 cut(s)	836, 1118
MflI	RGATCY	2 cut(s)	241, 292
MhlI	GDGCHC	2 cut(s)	746, 1464
MlsI	TGGCCA	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	141, 510
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	6 cut(s)	8, 666, 849, 869, 954, 1428
MslI	CAYNNNNRTG	2 cut(s)	336, 977
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	1340
MspR9I	CCNGG	6 cut(s)	196, 461, 627, 810, 886, 1340
MunI	CAATTG	2 cut(s)	836, 1118
Mva1269I	GAATGC	2 cut(s)	661, 1358
MvaI	CCWGG	5 cut(s)	196, 461, 627, 810, 886
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	266, 685, 1335
NciI	CCSGG	1 cut(s)	1340
NdeI	CATATG	1 cut(s)	1443
NdeII	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
NlaIII	CATG	3 cut(s)	389, 1082, 1456
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	4 cut(s)	60, 225, 327, 1277
NsiI	ATGCAT	1 cut(s)	661
OliI	CACNNNNGTG	1 cut(s)	977
PceI	AGGCCT	1 cut(s)	1147
PctI	GAATGC	2 cut(s)	661, 1358
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	19, 787, 900, 1237
PflMI	CCANNNNNTGG	1 cut(s)	919
PkrI	GCNGC	3 cut(s)	322, 673, 1378
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	849
Psp6I	CCWGG	5 cut(s)	194, 459, 625, 808, 884
PspFI	CCCAGC	3 cut(s)	423, 919, 1356
PspGI	CCWGG	5 cut(s)	194, 459, 625, 808, 884
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	4 cut(s)	163, 389, 532, 1004
PsuI	RGATCY	2 cut(s)	241, 292
RsaI	GTAC	2 cut(s)	637, 1294
RsaNI	GTAC	2 cut(s)	636, 1293
RseI	CAYNNNNRTG	2 cut(s)	336, 977
SaqAI	TTAA	6 cut(s)	8, 666, 849, 869, 954, 1428
SatI	GCNGC	3 cut(s)	321, 672, 1377
Sau3AI	GATC	8 cut(s)	241, 292, 565, 629, 796, 1096, 1270, 1435
Sau96I	GGNCC	4 cut(s)	163, 389, 532, 1004
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	6 cut(s)	196, 461, 627, 810, 886, 1340
SduI	GDGCHC	2 cut(s)	746, 1464
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	1142, 1212
SinI	GGWCC	3 cut(s)	163, 389, 532
SmiMI	CAYNNNNRTG	2 cut(s)	336, 977
SmlI	CTYRAG	2 cut(s)	296, 308
SmoI	CTYRAG	2 cut(s)	296, 308
SseBI	AGGCCT	1 cut(s)	1147
SsiI	CCGC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	1147
StyD4I	CCNGG	6 cut(s)	194, 459, 625, 808, 884, 1338
StyI	CCWWGG	2 cut(s)	315, 772
TaaI	ACNGT	5 cut(s)	652, 828, 1012, 1068, 1414
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	19, 787, 900, 1237
Tru1I	TTAA	6 cut(s)	8, 666, 849, 869, 954, 1428
Tru9I	TTAA	6 cut(s)	8, 666, 849, 869, 954, 1428
TscAI	CASTG	1 cut(s)	1417
TseFI	GTSAC	4 cut(s)	60, 225, 327, 1277
TseI	GCWGC	3 cut(s)	320, 671, 1376
Tsp45I	GTSAC	4 cut(s)	60, 225, 327, 1277
TspDTI	ATGAA	7 cut(s)	17, 136, 337, 374, 505, 1006, 1398
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	1417
Van91I	CCANNNNNTGG	1 cut(s)	919
VneI	GTGCAC	1 cut(s)	742
VpaK11BI	GGWCC	3 cut(s)	163, 389, 532
VspI	ATTAAT	1 cut(s)	849
XagI	CCTNNNNNAGG	1 cut(s)	798
XapI	RAATTY	2 cut(s)	1186, 1468
XmnI	GAANNNNTTC	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.