Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040867.1

Orthogroup ID

OG0008522

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2857

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 922 bp

gtctgatctggaaggtgttctggttgcaatgtttgaatacatattcaaaacgaaaaactctgaacctggatcaagtacatatcgggaaactgtgaatgcatttcttaatgctgcacggcttacaaaacacgacgaaggacatactgaggaaagtttgtcctttgaagatttcagaacttggtgcactcttcttccttctgtcaggaagttccttggaagcttattgattccacctgatcaaggaaggccaggttctcaggttccacggttattgcaattggaaaacattaattcaaatatgatattattaaatgaggtgtatgcctggcatataggaggaatccttcctcaccaagagctgggagaatggaaactattataccatagtgctgttaatggtctgagcttcaacacatttgtgggaaacatatcaaatgatagagggccaactgtattcattatcaaggataaagacggttatgtatatggaggttatgcttcccaaccgtgggagaggcatggtgatttctatggtgatctgaagtcatttcttttccaattgtacccgaaggcatctatatataggcctactggagcaaacactaatctacaatggtgtgctgtgaatttcggttcagagagcatcccaaatggtattggttttggaggaaaggtgaatcactttggtctcttcctttcggcgaactttgatcaggggcacactttctcgtgtaccacatttggttccccttgcctctccaagaccagccgaatatgcccggaagtaatagaatgctggggagttgttaggaaagcagcagatgaagaaaaactggacggtgctaaaggcactgtattggagaggtttaaggaagatcgtcatatgctcaacatggttgggctcgcaaattccagcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

306

Amino Acids

34.15

Weight (kDa)

5.87

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45243 AT4G34070 AT5G06260 AT5G06260 AT5G06260
fragaria_vesca	FvH4_6g19780
malus_domestica	MD14G1033800.v1.1
prunus_persica	Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1
pyrus_communis	pycom14g02980
rosa_chinensis	RchiOBHm_Chr3g0475131
rosa_laevigata	RLG00000023861
rosa_multiflora	Rmu_sc0003093.1_g000026 Rmu_sc0040867.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406540
rosa_rugosa	Rorug03G0146900
rosa_samantha	Rh3AG196700 Rh3BG226700 Rh3DG222200
rosa_wichuraiana	Rw3G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	626, 908
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	3 cut(s)	77, 564, 734
AfiI	CCNNNNNNNGG	4 cut(s)	240, 359, 508, 509
AgsI	TTSAA	5 cut(s)	36, 47, 165, 295, 410
AjnI	CCWGG	3 cut(s)	65, 248, 324
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	220, 359, 406
AluI	AGCT	3 cut(s)	220, 359, 406
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	693
Alw44I	GTGCAC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	246, 444, 585
ApaLI	GTGCAC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	111, 816
ApoI	RAATTY	2 cut(s)	626, 908
AseI	ATTAAT	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	4 cut(s)	342, 534, 546, 686
BaeGI	GKGCMC	2 cut(s)	186, 721
BanII	GRGCYC	1 cut(s)	904
BauI	CACGAG	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	98, 828
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	67, 250, 326
BclI	TGATCA	2 cut(s)	236, 710
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	693
BisI	GCNGC	2 cut(s)	112, 817
BlsI	GCNGC	2 cut(s)	113, 818
Bme1390I	CCNGG	4 cut(s)	67, 250, 326, 780
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	262, 746
BmrFI	CCNGG	4 cut(s)	67, 250, 326, 780
BmsI	GCATC	2 cut(s)	582, 652
BpmI	CTGGAG	1 cut(s)	613
BpuMI	CCSGG	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	212, 264, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 359, 508, 509
Bse1I	ACTGG	2 cut(s)	596, 838
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	67, 250, 326
BseDI	CCNNGG	3 cut(s)	212, 264, 507
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	4 cut(s)	240, 359, 508, 509
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	136, 270, 393
BseNI	ACTGG	2 cut(s)	596, 838
BseSI	GKGCMC	2 cut(s)	186, 721
BseXI	GCAGC	2 cut(s)	98, 828
BseYI	CCCAGC	2 cut(s)	359, 796
BsgI	GTGCAG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	248, 446, 587
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	780
BslI	CCNNNNNNNGG	4 cut(s)	240, 359, 508, 509
BsmAI	GTCTC	1 cut(s)	693
BsmI	GAATGC	2 cut(s)	101, 798
BsnI	GGCC	3 cut(s)	248, 446, 587
Bso31I	GGTCTC	1 cut(s)	693
Bsp1286I	GDGCHC	3 cut(s)	186, 721, 904
Bsp143I	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
BspANI	GGCC	3 cut(s)	248, 446, 587
BspCNI	CTCAG	3 cut(s)	137, 269, 394
BspLI	GGNNCC	2 cut(s)	262, 746
BspPI	GGATC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	596, 838
BssECI	CCNNGG	3 cut(s)	212, 264, 507
BssMI	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	67, 250, 326
Bst4CI	ACNGT	7 cut(s)	92, 268, 452, 477, 508, 840, 854
Bst6I	CTCTTC	2 cut(s)	193, 696
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	3 cut(s)	145, 256, 402
BstDSI	CCRYGG	2 cut(s)	264, 507
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	643
BstKTI	GATC	6 cut(s)	8, 72, 239, 539, 713, 878
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
BstMWI	GCNNNNNNNGC	1 cut(s)	775
BstNI	CCWGG	3 cut(s)	67, 250, 326
BstSCI	CCNGG	4 cut(s)	65, 248, 324, 778
BstSLI	GKGCMC	2 cut(s)	186, 721
BstV1I	GCAGC	2 cut(s)	98, 828
BsuRI	GGCC	3 cut(s)	248, 446, 587
BtgI	CCRYGG	2 cut(s)	264, 507
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	850
Cac8I	GCNNGC	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	76, 563, 733
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	2 cut(s)	519, 893
CviJI	RGCY	9 cut(s)	119, 220, 248, 359, 406, 446, 587, 769, 902
CviKI_1	RGCY	9 cut(s)	119, 220, 248, 359, 406, 446, 587, 769, 902
CviQI	GTAC	3 cut(s)	76, 563, 733
DdeI	CTNAG	3 cut(s)	145, 256, 402
DpnI	GATC	6 cut(s)	7, 71, 238, 538, 712, 877
DpnII	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
Eam1104I	CTCTTC	2 cut(s)	193, 696
EarI	CTCTTC	2 cut(s)	193, 696
Eco130I	CCWWGG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	904
Eco31I	GGTCTC	1 cut(s)	693
Eco57I	CTGAAG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	65, 248, 324
EcoT14I	CCWWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	522, 896
FatI	CATG	2 cut(s)	518, 892
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	236, 710
Fnu4HI	GCNGC	2 cut(s)	112, 817
FokI	GGATG	1 cut(s)	630
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	2 cut(s)	112, 817
GluI	GCNGC	2 cut(s)	112, 817
GsaI	CCCAGC	2 cut(s)	363, 800
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	248, 446, 587
HapII	CCGG	1 cut(s)	780
Hin1II	CATG	2 cut(s)	522, 896
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	227, 340, 677
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	4 cut(s)	342, 534, 546, 686
Hpy166II	GTNNAC	2 cut(s)	184, 733
Hpy188I	TCNGA	6 cut(s)	5, 62, 174, 403, 541, 638
Hpy188III	TCNNGA	3 cut(s)	9, 84, 203
Hpy8I	GTNNAC	2 cut(s)	184, 733
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	6 cut(s)	6, 129, 205, 238, 354, 563
HpyCH4III	ACNGT	7 cut(s)	92, 268, 452, 477, 508, 840, 854
HpyCH4V	TGCA	5 cut(s)	27, 99, 114, 184, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	775
HpyF3I	CTNAG	3 cut(s)	145, 256, 402
Hsp92II	CATG	2 cut(s)	522, 896
Ksp22I	TGATCA	2 cut(s)	236, 710
Kzo9I	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	2 cut(s)	98, 828
LweI	GCATC	2 cut(s)	582, 652
MalI	GATC	6 cut(s)	7, 71, 238, 538, 712, 877
MboI	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
MboII	GAAGA	6 cut(s)	177, 180, 183, 683, 837, 885
MfeI	CAATTG	2 cut(s)	276, 558
MhlI	GDGCHC	3 cut(s)	186, 721, 904
MluCI	AATT	5 cut(s)	276, 290, 558, 626, 908
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	16
MseI	TTAA	5 cut(s)	106, 289, 309, 394, 868
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	4 cut(s)	67, 250, 326, 780
MunI	CAATTG	2 cut(s)	276, 558
Mva1269I	GAATGC	2 cut(s)	101, 798
MvaI	CCWGG	3 cut(s)	67, 250, 326
MwoI	GCNNNNNNNGC	1 cut(s)	775
NciI	CCSGG	1 cut(s)	780
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
NlaIII	CATG	2 cut(s)	522, 896
NlaIV	GGNNCC	2 cut(s)	262, 746
NsiI	ATGCAT	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	587
PctI	GAATGC	2 cut(s)	101, 798
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	227, 340, 677
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	113, 818
PshBI	ATTAAT	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	65, 248, 324
PspFI	CCCAGC	2 cut(s)	359, 796
PspGI	CCWGG	3 cut(s)	65, 248, 324
PspN4I	GGNNCC	2 cut(s)	262, 746
PspPI	GGNCC	1 cut(s)	444
RsaI	GTAC	3 cut(s)	77, 564, 734
RsaNI	GTAC	3 cut(s)	76, 563, 733
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	106, 289, 309, 394, 868
SatI	GCNGC	2 cut(s)	112, 817
Sau3AI	GATC	6 cut(s)	5, 69, 236, 536, 710, 875
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	4 cut(s)	67, 250, 326, 780
SduI	GDGCHC	3 cut(s)	186, 721, 904
SfaNI	GCATC	2 cut(s)	582, 652
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	5 cut(s)	276, 290, 558, 626, 908
SseBI	AGGCCT	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	4 cut(s)	65, 248, 324, 778
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	7 cut(s)	92, 268, 452, 477, 508, 840, 854
TasI	AATT	5 cut(s)	276, 290, 558, 626, 908
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	227, 340, 677
Tru1I	TTAA	5 cut(s)	106, 289, 309, 394, 868
Tru9I	TTAA	5 cut(s)	106, 289, 309, 394, 868
TscAI	CASTG	1 cut(s)	857
TseI	GCWGC	2 cut(s)	111, 816
TspDTI	ATGAA	2 cut(s)	446, 838
TspRI	CASTG	1 cut(s)	857
Van91I	CCANNNNNTGG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	626, 908
XmnI	GAANNNNTTC	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.