Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008522

Physical Location & Seq

Genomic Coordinates Reverse (-)

12049446 .. 12050094

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAGAACTAGAGAAGAGGTTGTTGGTGTAGACATGGATAAAGTTCTTATGCTACTATCATGTAGGTTAGAAACCAAGTTCAAAAGATGTTCATCTACCCCAAATGATGTGTTCGAGTGCAAAACTTGCAATCGTCAATTCCCATCGTTCCAAGCTCTTGGTGGCCACAGAGCAAGCCACAATAAGCCAAGAACGTTAATGGGCAGTGATCAAGACCCGAAAAGTGAGAACAAAATGGCGCAAAGCAAGCCGAAAAAGCACGAGTGCTCCATATGTGGGCGTGAGTTTAGTTCGGGACAAGCTTTGGGGGGTCATATGAGAAGGCATAGAACGGTGAATGCTCGGTTTTCTGCTACCATTCCTTCTGGTGCGTCGGTTGATGGTGCTTCAAAGATGAAGATTCCGATACTAGTGAGATCGAATAGTAAGAGGTTGATGTGTTTGGACATGGACCTGAACTTGACGCCTCTAGAGAATGACTTGAAGCTGTTGTTTGGGAATATGGCACCAAAAATTGATACTTTGATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

9.68

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 63	1.5e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	88 - 112	4.1e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45243 AT4G34070 AT5G06260 AT5G06260 AT5G06260
fragaria_vesca	FvH4_6g19780
malus_domestica	MD14G1033800.v1.1
prunus_persica	Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1
pyrus_communis	pycom14g02980
rosa_chinensis	RchiOBHm_Chr3g0475131
rosa_laevigata	RLG00000023861
rosa_multiflora	Rmu_sc0003093.1_g000026 Rmu_sc0040867.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406540
rosa_rugosa	Rorug03G0146900
rosa_samantha	Rh3AG196700 Rh3BG226700 Rh3DG222200
rosa_wichuraiana	Rw3G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	33
AclI	AACGTT	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	85, 393, 487
AhlI	ACTAGT	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	158, 305, 490
AluI	AGCT	3 cut(s)	158, 305, 490
Alw21I	GWGCWC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	508
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	2 cut(s)	154, 377
BclI	TGATCA	1 cut(s)	211
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	3 cut(s)	12, 413, 473
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	211, 419
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	508
BssMI	GATC	2 cut(s)	211, 419
BssNI	GRCGYC	1 cut(s)	467
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	178, 251
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	214, 422
BstMBI	GATC	2 cut(s)	211, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	178, 251
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	2 cut(s)	363, 475
CviAII	CATG	3 cut(s)	37, 63, 451
CviJI	RGCY	7 cut(s)	158, 168, 180, 190, 253, 305, 490
CviKI_1	RGCY	7 cut(s)	158, 168, 180, 190, 253, 305, 490
DpnI	GATC	2 cut(s)	213, 421
DpnII	GATC	2 cut(s)	211, 419
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	454
FaeI	CATG	3 cut(s)	40, 66, 454
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	36, 62, 450
FauNDI	CATATG	2 cut(s)	275, 318
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	12, 413, 473
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	168
HgaI	GACGC	2 cut(s)	363, 475
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	40, 66, 454
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	1 cut(s)	403
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	215, 297, 473
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	318, 375
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	123, 132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	40, 66, 454
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 419
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	2 cut(s)	354, 470
MaeI	CTAG	3 cut(s)	12, 413, 473
MaeII	ACGT	1 cut(s)	197
MalI	GATC	2 cut(s)	213, 421
MboI	GATC	2 cut(s)	211, 419
MboII	GAAGA	3 cut(s)	16, 29, 412
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	140, 516
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	3 cut(s)	13, 426, 480
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	129, 250, 259
NdeI	CATATG	2 cut(s)	275, 318
NdeII	GATC	2 cut(s)	211, 419
NlaIII	CATG	3 cut(s)	40, 66, 454
NlaIV	GGNNCC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	403
Psp1406I	AACGTT	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	211, 419
Sau96I	GGNCC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	8 cut(s)	24, 71, 160, 200, 307, 437, 459, 492
SinI	GGWCC	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	2 cut(s)	140, 516
SspMI	CTAG	3 cut(s)	12, 413, 473
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	117, 422
TasI	AATT	2 cut(s)	140, 516
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	17, 84, 413, 522
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	3 cut(s)	12, 413, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.