Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008522

Physical Location & Seq

Genomic Coordinates Forward (+)

13014306 .. 13018024

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G099200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGCAACTCTCAGTCACCTTCATCTCACAAAGATCCTCGCTTTGCTTCCTCCTCCAGAGCTTTTTCTCATACGGAACTCGAAGCTCTCAAGTCCCTGCACGCGTCCCTGGCTGCTCAATCTCAGAGCAACGGTCCACACGTCTCTCCCTCAGTTTTTAAGAATTATTTTGGACTTCATGGTCCTCTTGGAGATAGAATGTTCGACTTAGTTACCCAGCAACGCAAAGACCAAAAACTCACCTTCGAAGACCTCGTTATTGCCAAAGGGATTTATGAGAAGGGAACAAAAGATGAGATTGAAGAATTCATATATCAGTTATTAGACGTATCCGGGAATGGCATTGTGGGGAGGTCTGATCTGGAATGTGTTCTGGTTGCAATGTTTGACAACATCTTCAATATGGACAACTCCGAACATGGATCAAGTGCGCATCACGACACTGTGAATATATTTCTTAATGCTGCAAAGTTCGCTAAGCATGACGAAAGACATGCTGAAGAAAGTTTGTCTTTTGAAGATTTCAGAACTTGGTGTACTCTTCTCCCGTCTGTCAGGAAGTTCCTTGGAAGCTTATTGATACCGCCTAATCAAGGAAGACCAGGTTCTCAGGTTCCTCGATTATTGCATTTGGAAAACATCGATCCTAATATGATTCTATTAAAGAAGATTTATGCTTGGCATATAGGAGGAATCCTTCCGCAGCATGATCTGGAGGAATGGAAACTTTTATACCATAGTTCTGTAAATGGTCTGAGCTTTAGCACATTTTTGGGCAACGTATCAAAGGATAAGGGGCCGACTGTACTCATTATCAAGGACAAAGAAGGTTATGTATATGGAGGTTATGCTTCGCAGCCATGGGAGAGGCATGGTGATTTCTATGGAGATTTGAAGTCATTTCTTTTCCAATTGTATCCCACGGCATCTATATTCAGGCCTACTGGAGCAAACACTAATCTACAGTGGTGTGCTGTGAATTTCAGTTCAGCAAGCATCCCAAATGGTATCGGTTTTGGAGGAAAAGTGAATCACTTTGGCCTTTTCCTTTTGGCCACCTTAGATCAGGGGCACACTTTCTCCTGTACCACATTTGGCTCCCCTTGCCTCTCCAAGACCAACCGAATATACCCTGAAGTGATAGAATGCTGGGGAGTGGTTACTAAAGTAGCAGACGAAGAAAAACATGACGGCGGAAAAGGTACTGTATTGGAGAGATTTAAGGAGGACCGTCATATGCTCAACATGGTTGGTCTCGCAAATGCAAGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLD

Protein Analysis

425

Amino Acids

47.2

Weight (kDa)

6.17

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45243 AT4G34070 AT5G06260 AT5G06260 AT5G06260
fragaria_vesca	FvH4_6g19780
malus_domestica	MD14G1033800.v1.1
prunus_persica	Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1 Prupe.7G099200_v2.0.a1
pyrus_communis	pycom14g02980
rosa_chinensis	RchiOBHm_Chr3g0475131
rosa_laevigata	RLG00000023861
rosa_multiflora	Rmu_sc0003093.1_g000026 Rmu_sc0040867.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406540
rosa_rugosa	Rorug03G0146900
rosa_samantha	Rh3AG196700 Rh3BG226700 Rh3DG222200
rosa_wichuraiana	Rw3G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
Acc16I	TGCGCA	1 cut(s)	432
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	584, 701, 1194
AclWI	GGATC	3 cut(s)	29, 430, 638
AcoI	YGGCCR	1 cut(s)	1053
AcsI	RAATTY	2 cut(s)	305, 979
AcuI	CTGAAG	2 cut(s)	519, 1155
AfaI	GTAC	4 cut(s)	538, 807, 1087, 1204
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	2 cut(s)	102, 139
AgsI	TTSAA	4 cut(s)	302, 400, 518, 895
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	108, 601
AluBI	AGCT	4 cut(s)	62, 86, 573, 759
AluI	AGCT	4 cut(s)	62, 86, 573, 759
Alw26I	GTCTC	2 cut(s)	148, 1259
AlwI	GGATC	3 cut(s)	29, 430, 638
AoxI	GGCC	4 cut(s)	797, 938, 1039, 1053
ApeKI	GCWGC	4 cut(s)	113, 464, 703, 856
ApoI	RAATTY	2 cut(s)	305, 979
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	4 cut(s)	134, 182, 797, 1228
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	9, 232, 887
AsuII	TTCGAA	1 cut(s)	246
AvaII	GGWCC	3 cut(s)	134, 182, 1228
BaeGI	GKGCMC	1 cut(s)	1074
BalI	TGGCCA	1 cut(s)	1055
BbsI	GAAGAC	2 cut(s)	255, 604
BbvI	GCAGC	4 cut(s)	100, 451, 715, 868
BceAI	ACGGC	2 cut(s)	939, 1207
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	2 cut(s)	110, 603
BciVI	GTATCC	2 cut(s)	340, 927
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	148, 1259
BfmI	CTRYAG	1 cut(s)	962
BfuI	GTATCC	2 cut(s)	340, 927
BisI	GCNGC	4 cut(s)	114, 465, 704, 857
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	4 cut(s)	115, 466, 705, 858
Bme1390I	CCNGG	3 cut(s)	110, 334, 603
Bme18I	GGWCC	3 cut(s)	134, 182, 1228
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	134, 182, 797, 1228
BmiI	GGNNCC	3 cut(s)	615, 798, 1099
BmrFI	CCNGG	3 cut(s)	110, 334, 603
BmsI	GCATC	3 cut(s)	442, 935, 1005
BpiI	GAAGAC	2 cut(s)	255, 604
BpmI	CTGGAG	3 cut(s)	40, 734, 966
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	1259
BsaJI	CCNNGG	4 cut(s)	108, 565, 860, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	1011, 1041, 1064, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	110, 603
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	4 cut(s)	108, 565, 860, 921
BseGI	GGATG	1 cut(s)	996
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	5 cut(s)	26, 137, 165, 623, 746
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	1074
BseXI	GCAGC	4 cut(s)	100, 451, 715, 868
BseYI	CCCAGC	2 cut(s)	216, 1149
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	4 cut(s)	799, 940, 1041, 1055
BshVI	ATCGAT	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	79, 91
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	2 cut(s)	148, 1259
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	79, 91
BsmI	GAATGC	1 cut(s)	1151
BsnI	GGCC	4 cut(s)	799, 940, 1041, 1055
Bso31I	GGTCTC	1 cut(s)	1259
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	1074
Bsp143I	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	3 cut(s)	584, 701, 1194
BspANI	GGCC	4 cut(s)	799, 940, 1041, 1055
BspCNI	CTCAG	5 cut(s)	25, 136, 164, 622, 747
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	615, 798, 1099
BspPI	GGATC	3 cut(s)	29, 430, 638
BspT104I	TTCGAA	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	1259
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	949
BssECI	CCNNGG	4 cut(s)	108, 565, 860, 921
BssMI	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
BssT1I	CCWWGG	2 cut(s)	565, 860
Bst2UI	CCWGG	2 cut(s)	110, 603
Bst4CI	ACNGT	6 cut(s)	134, 445, 805, 966, 1207, 1232
Bst6I	CTCTTC	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	102, 994
BstDEI	CTNAG	8 cut(s)	12, 123, 151, 208, 477, 609, 755, 1060
BstDSI	CCRYGG	2 cut(s)	860, 921
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	996
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	6 cut(s)	37, 361, 425, 646, 712, 1066
BstMAI	GTCTC	2 cut(s)	148, 1259
BstMBI	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 473, 1104
BstNI	CCWGG	2 cut(s)	110, 603
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	3 cut(s)	108, 332, 601
BstSFI	CTRYAG	1 cut(s)	962
BstSLI	GKGCMC	1 cut(s)	1074
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	100, 451, 715, 868
BstV2I	GAAGAC	2 cut(s)	255, 604
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	642
BsuI	GTATCC	2 cut(s)	340, 927
BsuRI	GGCC	4 cut(s)	799, 940, 1041, 1055
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	2 cut(s)	860, 921
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	996
BtsIMutI	CAGTG	2 cut(s)	441, 971
Cac8I	GCNNGC	2 cut(s)	102, 994
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	134, 182, 797, 1228
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	1 cut(s)	93
CsiI	ACCWGGT	1 cut(s)	601
Csp6I	GTAC	4 cut(s)	537, 806, 1086, 1203
CviAII	CATG	9 cut(s)	179, 419, 482, 494, 707, 861, 872, 1187, 1246
CviQI	GTAC	4 cut(s)	537, 806, 1086, 1203
DdeI	CTNAG	8 cut(s)	12, 123, 151, 208, 477, 609, 755, 1060
DpnI	GATC	6 cut(s)	36, 360, 424, 645, 711, 1065
DpnII	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	1209
Eco130I	CCWWGG	2 cut(s)	565, 860
Eco147I	AGGCCT	1 cut(s)	940
Eco31I	GGTCTC	1 cut(s)	1259
Eco47I	GGWCC	3 cut(s)	134, 182, 1228
Eco57I	CTGAAG	2 cut(s)	519, 1155
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	108, 601
EcoT14I	CCWWGG	2 cut(s)	565, 860
ErhI	CCWWGG	2 cut(s)	565, 860
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	9 cut(s)	182, 422, 485, 497, 710, 864, 875, 1190, 1249
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FaqI	GGGAC	2 cut(s)	79, 91
FatI	CATG	9 cut(s)	178, 418, 481, 493, 706, 860, 871, 1186, 1245
FauNDI	CATATG	1 cut(s)	1236
Fnu4HI	GCNGC	4 cut(s)	114, 465, 704, 857
FokI	GGATG	1 cut(s)	983
Fsp4HI	GCNGC	4 cut(s)	114, 465, 704, 857
FspAI	RTGCGCAY	1 cut(s)	432
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	4 cut(s)	114, 465, 704, 857
GsaI	CCCAGC	2 cut(s)	220, 1153
GsuI	CTGGAG	3 cut(s)	40, 734, 966
HaeIII	GGCC	4 cut(s)	799, 940, 1041, 1055
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	9 cut(s)	182, 422, 485, 497, 710, 864, 875, 1190, 1249
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	3 cut(s)	655, 693, 1030
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	9, 232, 887
Hpy166II	GTNNAC	2 cut(s)	137, 537
Hpy188I	TCNGA	5 cut(s)	126, 358, 415, 527, 756
Hpy188III	TCNNGA	5 cut(s)	57, 362, 437, 556, 713
Hpy8I	GTNNAC	2 cut(s)	137, 537
HpyAV	CCTTC	5 cut(s)	30, 253, 274, 707, 821
HpyCH4III	ACNGT	6 cut(s)	134, 445, 805, 966, 1207, 1232
HpyCH4IV	ACGT	3 cut(s)	141, 327, 780
HpyCH4V	TGCA	5 cut(s)	100, 380, 467, 628, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 473, 1104
HpyF3I	CTNAG	8 cut(s)	12, 123, 151, 208, 477, 609, 755, 1060
HpySE526I	ACGT	3 cut(s)	141, 327, 780
Hsp92II	CATG	9 cut(s)	182, 422, 485, 497, 710, 864, 875, 1190, 1249
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
LmnI	GCTCC	2 cut(s)	947, 1103
Lsp1109I	GCAGC	4 cut(s)	100, 451, 715, 868
LweI	GCATC	3 cut(s)	442, 935, 1005
MabI	ACCWGGT	1 cut(s)	601
MaeII	ACGT	3 cut(s)	141, 327, 780
MaeIII	GTNAC	3 cut(s)	15, 211, 1159
MalI	GATC	6 cut(s)	36, 360, 424, 645, 711, 1065
MboI	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
MboII	GAAGA	9 cut(s)	260, 314, 388, 512, 530, 533, 609, 679, 1190
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	1074
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	4 cut(s)	163, 305, 911, 979
MluI	ACGCGT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	1055
Mox20I	TGGCCA	1 cut(s)	1055
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	4 cut(s)	159, 459, 662, 1221
Msp20I	TGGCCA	1 cut(s)	1055
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	3 cut(s)	110, 334, 603
MunI	CAATTG	1 cut(s)	911
Mva1269I	GAATGC	1 cut(s)	1151
MvaI	CCWGG	2 cut(s)	110, 603
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	110, 473, 1104
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	1236
NdeII	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
NlaIII	CATG	9 cut(s)	182, 422, 485, 497, 710, 864, 875, 1190, 1249
NlaIV	GGNNCC	3 cut(s)	615, 798, 1099
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 252
PctI	GAATGC	1 cut(s)	1151
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	655, 693, 1030
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	115, 466, 705, 858
Psp6I	CCWGG	2 cut(s)	108, 601
PspFI	CCCAGC	2 cut(s)	216, 1149
PspGI	CCWGG	2 cut(s)	108, 601
PspN4I	GGNNCC	3 cut(s)	615, 798, 1099
PspPI	GGNCC	4 cut(s)	134, 182, 797, 1228
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	4 cut(s)	538, 807, 1087, 1204
RsaNI	GTAC	4 cut(s)	537, 806, 1086, 1203
SaqAI	TTAA	4 cut(s)	159, 459, 662, 1221
SatI	GCNGC	4 cut(s)	114, 465, 704, 857
Sau3AI	GATC	6 cut(s)	34, 358, 422, 643, 709, 1063
Sau96I	GGNCC	4 cut(s)	134, 182, 797, 1228
ScrFI	CCNGG	3 cut(s)	110, 334, 603
SduI	GDGCHC	1 cut(s)	1074
SexAI	ACCWGGT	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	442, 935, 1005
SfcI	CTRYAG	1 cut(s)	962
SfuI	TTCGAA	1 cut(s)	246
SinI	GGWCC	3 cut(s)	134, 182, 1228
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	163, 305, 911, 979
SseBI	AGGCCT	1 cut(s)	940
SsiI	CCGC	3 cut(s)	584, 701, 1194
StuI	AGGCCT	1 cut(s)	940
StyD4I	CCNGG	3 cut(s)	108, 332, 601
StyI	CCWWGG	2 cut(s)	565, 860
TaaI	ACNGT	6 cut(s)	134, 445, 805, 966, 1207, 1232
TaiI	ACGT	3 cut(s)	144, 330, 783
TaqI	TCGA	5 cut(s)	81, 204, 246, 619, 642
TasI	AATT	4 cut(s)	163, 305, 911, 979
TatI	WGTACW	2 cut(s)	536, 805
TfiI	GAWTC	3 cut(s)	655, 693, 1030
Tru1I	TTAA	4 cut(s)	159, 459, 662, 1221
Tru9I	TTAA	4 cut(s)	159, 459, 662, 1221
TscAI	CASTG	2 cut(s)	448, 971
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	4 cut(s)	113, 464, 703, 856
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	12, 167, 298
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	448, 971
VpaK11BI	GGWCC	3 cut(s)	134, 182, 1228
XagI	CCTNNNNNAGG	1 cut(s)	591
XapI	RAATTY	2 cut(s)	305, 979
XceI	RCATGY	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.