FvH4_6g19780

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008522
Physical Location & Seq
Reverse (-)
13246922 .. 13250464
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19780.t1

Sequence Viewer

Length: 1272 bp
ATGGGCAACGCTCAGTCGCCTCCTCACAAAGATCCTCGCTTTGCTTCCGCCTCCAGAGCTTTCACTCACACTGAGCTTGAAGATCTCAAGTCCCTGATCGAGTCCTTGGCTGCTCAATCCCACAGCGAAGGCCAGTTCGTCTCTCCCTCGATTTTTCAGAGTTATTTCGGGCTTCATGGTCCTCTTGGAGATAGGATGTTTGATTTAGTGACCCAGCAACGCAAAGACCAGAAGCTCACTTTTGAAGACCTGGTGGTTGCCAAAGGGACTTATGAGAAGGGAACAAGAGATGATATTGAAGAGTTCATATATAAATTGTTGGACCTAAACGGTGACGGCGTTTTGGGGAGGTCTGATCTGGAAGGTGTTCTGGTTGCAATGTTTGAATATATATTCAAAACAGAAAACTCTGAACCTGGATCAAATACATATCGTGAAACTGTGAATGTGTTTCTTAATGCTGCACGGTTTACAAAGCACGATGAAGGACATACTGAGGAAAGTTTGTCTTTTGAAGATTTCAGAAATTGGTGCACTCTTCTCCCTTCTGTCAGGAAGTTCCTTGGAAGCTTATTGATTCCACCTGATCAAGGCAGACCAGGTTCTCAAGTTCCTCAATTATTGCAAGTGGAGAACATCAACTCAAATATGATATTATTGAATGAGGTGTATGCCTGGCATATAGGAGGACTCCTTCCTCACCAAGAGCTGGGAGAATGGAAACTATTGTACCATAGTGCTGTTAATGGTCTGAGCTTCAACACATTTGTGGGAAACATATTAAACGACAAGGGGCCAACTGTATTCATTATCAAGGACAAAGATGGTTATGTATATGGAGGTTATGCTTCCCAACCGTGGGAGAGGCATGGCGATTTCTATGGTGACTTGAAGTCCTTTCTTTTCCAATTGTATCCGAAGGCATCTATTTTCAGGCCTACTGGAGCAAACACTAATATACAATGGTGTGCTGTGAATTTTGGTTCAGAGAGCATCCCGAATGGTATTGGTTTTGGAGGAAAGGTGAATCACTTTGGTCTCTTCCTTTCAGCAAACTTTGATCAGGGGCACACTTTCGAGTGTACCACATTTGGTTCCCCTTGCCTCTCTAAGACTAGCCTTATATGCCCGGAAGTAATAGAGTGCTGGGGAGTTGTTAGGAAATCAGCAGATGAACAAAAACAGGACGGCGCTAAAGGCACTGTACTGGAGAGGTTTAAGGAAGATCGTCATATGCTTAACATGGTTGGGCTCGCAAATTCTAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

424

Amino Acids

47.29

Weight (kDa)

5.36

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 215 - 385 2.1e-41 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 709
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 26, 427
AcsI RAATTY 2 cut(s) 976, 1258
AfaI GTAC 3 cut(s) 731, 1084, 1206
AfiI CCNNNNNNNGG 4 cut(s) 590, 709, 858, 859
AgsI TTSAA 9 cut(s) 80, 245, 299, 386, 397, 515, 661, 760, 892
AhdI GACNNNNNGTC 1 cut(s) 892
AjnI CCWGG 4 cut(s) 249, 415, 598, 674
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 6 cut(s) 59, 76, 235, 570, 709, 756
AluI AGCT 6 cut(s) 59, 76, 235, 570, 709, 756
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 145, 1043
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 2 cut(s) 26, 427
AoxI GGCC 3 cut(s) 130, 794, 935
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 110, 461
ApoI RAATTY 2 cut(s) 976, 1258
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 1193
AspS9I GGNCC 3 cut(s) 179, 322, 794
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 4 cut(s) 344, 692, 896, 1036
AvaII GGWCC 2 cut(s) 179, 322
BaeGI GKGCMC 2 cut(s) 536, 1071
BaeI ACNNNNGTAYC 2 cut(s) 713, 746
BanII GRGCYC 1 cut(s) 1254
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 2 cut(s) 97, 448
BccI CCATC 1 cut(s) 818
BceAI ACGGC 2 cut(s) 352, 1204
BciT130I CCWGG 4 cut(s) 251, 417, 600, 676
BciVI GTATCC 1 cut(s) 924
BclI TGATCA 2 cut(s) 586, 1060
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 2 cut(s) 145, 1043
BfaI CTAG 2 cut(s) 1116, 1263
BfoI RGCGCY 1 cut(s) 1194
BfuI GTATCC 1 cut(s) 924
BglII AGATCT 1 cut(s) 82
BisI GCNGC 2 cut(s) 111, 462
BlsI GCNGC 2 cut(s) 112, 463
Bme1390I CCNGG 5 cut(s) 251, 417, 600, 676, 1130
Bme18I GGWCC 2 cut(s) 179, 322
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 3 cut(s) 179, 322, 794
BmiI GGNNCC 2 cut(s) 795, 1096
BmrFI CCNGG 5 cut(s) 251, 417, 600, 676, 1130
BmsI GCATC 2 cut(s) 932, 1002
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 3 cut(s) 37, 963, 1229
BpuEI CTTGAG 2 cut(s) 71, 591
BpuMI CCSGG 1 cut(s) 1130
BsaI GGTCTC 1 cut(s) 1043
BsaJI CCNNGG 3 cut(s) 105, 562, 857
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 590, 709, 858, 859
Bse1I ACTGG 3 cut(s) 133, 946, 1212
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 4 cut(s) 251, 417, 600, 676
BseDI CCNNGG 3 cut(s) 105, 562, 857
BseGI GGATG 2 cut(s) 201, 993
BseLI CCNNNNNNNGG 4 cut(s) 590, 709, 858, 859
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 4 cut(s) 26, 63, 486, 743
BseNI ACTGG 3 cut(s) 133, 946, 1212
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 2 cut(s) 536, 1071
BseXI GCAGC 2 cut(s) 97, 448
BseYI CCCAGC 3 cut(s) 213, 709, 1146
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 3 cut(s) 132, 796, 937
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 1130
BslFI GGGAC 2 cut(s) 76, 280
BslI CCNNNNNNNGG 4 cut(s) 590, 709, 858, 859
BsmAI GTCTC 2 cut(s) 145, 1043
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 76, 280
BsnI GGCC 3 cut(s) 132, 796, 937
Bso31I GGTCTC 1 cut(s) 1043
Bsp1286I GDGCHC 3 cut(s) 536, 1071, 1254
Bsp143I GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
BspACI CCGC 1 cut(s) 48
BspANI GGCC 3 cut(s) 132, 796, 937
BspCNI CTCAG 4 cut(s) 25, 64, 487, 744
BspLI GGNNCC 2 cut(s) 795, 1096
BspPI GGATC 2 cut(s) 26, 427
BspTNI GGTCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 3 cut(s) 133, 946, 1212
BssECI CCNNGG 3 cut(s) 105, 562, 857
BssMI GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2UI CCWGG 4 cut(s) 251, 417, 600, 676
Bst4CI ACNGT 6 cut(s) 332, 442, 468, 802, 858, 1204
Bst6I CTCTTC 3 cut(s) 294, 543, 1046
BstC8I GCNNGC 1 cut(s) 1254
BstDEI CTNAG 5 cut(s) 12, 72, 495, 752, 1110
BstDSI CCRYGG 1 cut(s) 857
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 201, 993
BstH2I RGCGCY 1 cut(s) 1194
BstHHI GCGC 1 cut(s) 1193
BstKTI GATC 8 cut(s) 34, 85, 99, 358, 422, 589, 1063, 1228
BstMAI GTCTC 2 cut(s) 145, 1043
BstMBI GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 56, 1125, 1197
BstNI CCWGG 4 cut(s) 251, 417, 600, 676
BstSCI CCNGG 5 cut(s) 249, 415, 598, 674, 1128
BstSLI GKGCMC 2 cut(s) 536, 1071
BstV1I GCAGC 2 cut(s) 97, 448
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 31, 82
BstYI RGATCY 2 cut(s) 31, 82
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 3 cut(s) 132, 796, 937
BtgI CCRYGG 1 cut(s) 857
BtsCI GGATG 2 cut(s) 201, 993
BtsIMutI CAGTG 2 cut(s) 69, 1200
Cac8I GCNNGC 1 cut(s) 1254
CfoI GCGC 1 cut(s) 1193
Cfr13I GGNCC 3 cut(s) 179, 322, 794
CsiI ACCWGGT 2 cut(s) 249, 598
Csp6I GTAC 3 cut(s) 730, 1083, 1205
CviAII CATG 3 cut(s) 176, 869, 1243
CviQI GTAC 3 cut(s) 730, 1083, 1205
DdeI CTNAG 5 cut(s) 12, 72, 495, 752, 1110
DpnI GATC 8 cut(s) 33, 84, 98, 357, 421, 588, 1062, 1227
DpnII GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
DriI GACNNNNNGTC 1 cut(s) 892
Eam1104I CTCTTC 3 cut(s) 294, 543, 1046
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 3 cut(s) 294, 543, 1046
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 105, 562
Eco147I AGGCCT 1 cut(s) 937
Eco24I GRGCYC 1 cut(s) 1254
Eco31I GGTCTC 1 cut(s) 1043
Eco47I GGWCC 2 cut(s) 179, 322
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoRII CCWGG 4 cut(s) 249, 415, 598, 674
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT38I GRGCYC 1 cut(s) 1254
ErhI CCWWGG 2 cut(s) 105, 562
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 3 cut(s) 179, 872, 1246
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 2 cut(s) 76, 280
FatI CATG 3 cut(s) 175, 868, 1242
FauNDI CATATG 1 cut(s) 1233
FbaI TGATCA 2 cut(s) 586, 1060
Fnu4HI GCNGC 2 cut(s) 111, 462
FokI GGATG 2 cut(s) 208, 980
FriOI GRGCYC 1 cut(s) 1254
Fsp4HI GCNGC 2 cut(s) 111, 462
FspBI CTAG 2 cut(s) 1116, 1263
GlaI GCGC 1 cut(s) 1192
GluI GCNGC 2 cut(s) 111, 462
GsaI CCCAGC 3 cut(s) 217, 713, 1150
GsuI CTGGAG 3 cut(s) 37, 963, 1229
HaeII RGCGCY 1 cut(s) 1194
HaeIII GGCC 3 cut(s) 132, 796, 937
HapII CCGG 1 cut(s) 1130
HhaI GCGC 1 cut(s) 1193
Hin1II CATG 3 cut(s) 179, 872, 1246
Hin6I GCGC 1 cut(s) 1191
HinP1I GCGC 1 cut(s) 1191
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 4 cut(s) 101, 577, 690, 1027
HpaII CCGG 1 cut(s) 1130
HphI GGTGA 4 cut(s) 344, 692, 896, 1036
Hpy166II GTNNAC 3 cut(s) 471, 534, 1083
Hpy188I TCNGA 7 cut(s) 159, 355, 412, 524, 753, 918, 988
Hpy188III TCNNGA 5 cut(s) 54, 359, 434, 553, 997
Hpy8I GTNNAC 3 cut(s) 471, 534, 1083
HpyAV CCTTC 7 cut(s) 122, 271, 356, 479, 555, 704, 913
HpyCH4III ACNGT 6 cut(s) 332, 442, 468, 802, 858, 1204
HpyCH4V TGCA 4 cut(s) 377, 464, 534, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 1125, 1197
HpyF3I CTNAG 5 cut(s) 12, 72, 495, 752, 1110
Hsp92II CATG 3 cut(s) 179, 872, 1246
HspAI GCGC 1 cut(s) 1191
Ksp22I TGATCA 2 cut(s) 586, 1060
Kzo9I GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
LmnI GCTCC 1 cut(s) 944
Lsp1109I GCAGC 2 cut(s) 97, 448
LweI GCATC 2 cut(s) 932, 1002
MabI ACCWGGT 2 cut(s) 249, 598
MaeI CTAG 2 cut(s) 1116, 1263
MaeIII GTNAC 3 cut(s) 208, 332, 884
MalI GATC 8 cut(s) 33, 84, 98, 357, 421, 588, 1062, 1227
MboI GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
MboII GAAGA 7 cut(s) 92, 257, 311, 527, 530, 1033, 1235
MfeI CAATTG 1 cut(s) 908
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 3 cut(s) 536, 1071, 1254
MluCI AATT 6 cut(s) 314, 526, 617, 908, 976, 1258
MlyI GAGTC 2 cut(s) 110, 684
MmeI TCCRAC 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 5 cut(s) 456, 744, 782, 1218, 1239
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 1 cut(s) 1130
MspR9I CCNGG 5 cut(s) 251, 417, 600, 676, 1130
MunI CAATTG 1 cut(s) 908
MvaI CCWGG 4 cut(s) 251, 417, 600, 676
MwoI GCNNNNNNNGC 3 cut(s) 56, 1125, 1197
NciI CCSGG 1 cut(s) 1130
NdeI CATATG 1 cut(s) 1233
NdeII GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
NlaIII CATG 3 cut(s) 179, 872, 1246
NlaIV GGNNCC 2 cut(s) 795, 1096
NmuCI GTSAC 3 cut(s) 208, 332, 884
OliI CACNNNNGTG 1 cut(s) 767
PceI AGGCCT 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 577, 1027
PflMI CCANNNNNTGG 1 cut(s) 709
PkrI GCNGC 2 cut(s) 112, 463
PleI GAGTC 2 cut(s) 109, 684
PpsI GAGTC 2 cut(s) 109, 684
Psp6I CCWGG 4 cut(s) 249, 415, 598, 674
PspFI CCCAGC 3 cut(s) 213, 709, 1146
PspGI CCWGG 4 cut(s) 249, 415, 598, 674
PspN4I GGNNCC 2 cut(s) 795, 1096
PspPI GGNCC 3 cut(s) 179, 322, 794
PsuI RGATCY 2 cut(s) 31, 82
RsaI GTAC 3 cut(s) 731, 1084, 1206
RsaNI GTAC 3 cut(s) 730, 1083, 1205
RseI CAYNNNNRTG 1 cut(s) 767
SaqAI TTAA 5 cut(s) 456, 744, 782, 1218, 1239
SatI GCNGC 2 cut(s) 111, 462
Sau3AI GATC 8 cut(s) 31, 82, 96, 355, 419, 586, 1060, 1225
Sau96I GGNCC 3 cut(s) 179, 322, 794
SchI GAGTC 2 cut(s) 110, 684
ScrFI CCNGG 5 cut(s) 251, 417, 600, 676, 1130
SduI GDGCHC 3 cut(s) 536, 1071, 1254
SexAI ACCWGGT 2 cut(s) 249, 598
SfaNI GCATC 2 cut(s) 932, 1002
SinI GGWCC 2 cut(s) 179, 322
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 2 cut(s) 86, 606
SmoI CTYRAG 2 cut(s) 86, 606
Sse9I AATT 6 cut(s) 314, 526, 617, 908, 976, 1258
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 1116, 1263
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 5 cut(s) 249, 415, 598, 674, 1128
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 6 cut(s) 332, 442, 468, 802, 858, 1204
TaqI TCGA 3 cut(s) 99, 149, 1077
TasI AATT 6 cut(s) 314, 526, 617, 908, 976, 1258
TatI WGTACW 1 cut(s) 1204
TfiI GAWTC 2 cut(s) 577, 1027
Tru1I TTAA 5 cut(s) 456, 744, 782, 1218, 1239
Tru9I TTAA 5 cut(s) 456, 744, 782, 1218, 1239
TscAI CASTG 2 cut(s) 76, 1207
TseFI GTSAC 3 cut(s) 208, 332, 884
TseI GCWGC 2 cut(s) 110, 461
Tsp45I GTSAC 3 cut(s) 208, 332, 884
TspDTI ATGAA 5 cut(s) 164, 295, 498, 796, 1188
TspRI CASTG 2 cut(s) 76, 1207
Van91I CCANNNNNTGG 1 cut(s) 709
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 179, 322
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 2 cut(s) 976, 1258
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 2 cut(s) 1116, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.