Rw3G017900

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008522
Physical Location & Seq
Reverse (-)
19667171 .. 19670604
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017900.1

Sequence Viewer

Length: 1254 bp
ATGGGCAACGCTCAGTCACCTCCTCACAAAGATCCTCGCTTTGCTTCTGCCTCCAGAGCTTTTACTCATACTGAGCTTGAAGATCTCAAGTCCCTGCTTGAGTCCTTGGCTGCTCAGTCACACAGCGACGGCCAATTCATCTCTCCCTCGGTTTTTCAGACTTATTTCGGGCTTCATGGTCCTCTTGGAGATAGGATGTTTGATTTAGTAACCCAGCAACGGAAAGACCAGAAGCTCACTTTTCAAGACCTGGTGGTAGCCAAAGGGACTTATGAGAAGGGAACAAGAGATGATATTGAAGAGTTCATATATAAATTGTTGGACCTAAACGGCGATGGCATTTTGGGGAGGTCTGATCTGGAAGGTGTTCTGGTTGCAATGTTTGAATACATATTCAAAACGAAAAACTCTGAACCTGGATCAAGTACATATCGGGAAACTGTGAATGCATTTCTTAATGCTGCACGGCTTACAAAGCACGATGAAGGACATACTGAGGAAAGTTTGTCCTTTGAAGAGTTCAGAACTTGGTGCACTCTTCTTCCTTCTGTCAGGAAGTTCCTTGGAAGCTTATTGATTCCACCTGATCAAGGTCCACGGTTATTGCAATTGGAAAACATTAATTCAAATATGATATTATTAAACGAGGTGTATGCCTGGCATATAGGAGGAATCCTTCCTCACCAAGAGCTGGGAGAATGGAAACTATTATACCATAGTGCTGTTAATGGTCTGAGCTTCAACACATTTGTGGGAAACATATCAAATGATAGAGGGCCAACTGTATTCATTATCAAGGATAAAGACGGTTATGTATATGGAGGTTATGCTTCCCAACCGTGGGAGAGGCATGGTGATTTCTATGGTGATCTGAAGTCATTTCTTTTCCAATTGTATCCGAAGGCATCTATATATAGGCCTACTGGAGCAAACACTAATCTACAATGGTGTGCTGTGAATTTCGGTTCAGAGAGCATCCCAAATGGTATTGGTTTTGGAGGAAAGGTGAATCACTTTGGTCTCTTCCTTTCGGCGAACTTTGATCAGGGGCACACTTTCTCGTGTACCACATTTGGTTCCCCTTGCCTCTCCAAGACCAGCCGAATATGCCCGGAAGTAATAGAATGCTGGGGAGTTGTTAGGAAAGCAGCAGATGAAGAAAAACTGGACGGTGCTAAAGGCACTGTATTGGAGAGGTTTAAGGAAGATCGTCATATGCTCAACATGGTTGGGCTCGCAAATTCCAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

417

Amino Acids

46.62

Weight (kDa)

5.66

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 209 - 379 2e-42 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 691
AclWI GGATC 2 cut(s) 26, 427
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 2 cut(s) 958, 1240
AcuI CTGAAG 1 cut(s) 893
AfaI GTAC 2 cut(s) 427, 1066
AfiI CCNNNNNNNGG 5 cut(s) 219, 590, 691, 840, 841
AgsI TTSAA 8 cut(s) 80, 245, 299, 386, 397, 515, 627, 742
AjnI CCWGG 3 cut(s) 249, 415, 656
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 6 cut(s) 59, 76, 235, 570, 691, 738
AluI AGCT 6 cut(s) 59, 76, 235, 570, 691, 738
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 1 cut(s) 1025
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 2 cut(s) 26, 427
AoxI GGCC 3 cut(s) 130, 776, 917
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 3 cut(s) 110, 461, 1148
ApoI RAATTY 2 cut(s) 958, 1240
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 4 cut(s) 179, 322, 593, 776
AsuC2I CCSGG 1 cut(s) 1112
AsuHPI GGTGA 5 cut(s) 9, 674, 866, 878, 1018
AvaII GGWCC 3 cut(s) 179, 322, 593
BaeGI GKGCMC 2 cut(s) 536, 1053
BanII GRGCYC 1 cut(s) 1236
BauI CACGAG 1 cut(s) 1060
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 97, 448, 1160
BccI CCATC 1 cut(s) 329
BceAI ACGGC 3 cut(s) 145, 346, 482
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 3 cut(s) 251, 417, 658
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 2 cut(s) 586, 1042
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 1 cut(s) 1025
BfuI GTATCC 1 cut(s) 906
BglII AGATCT 1 cut(s) 82
BisI GCNGC 3 cut(s) 111, 462, 1149
BlsI GCNGC 3 cut(s) 112, 463, 1150
Bme1390I CCNGG 4 cut(s) 251, 417, 658, 1112
Bme18I GGWCC 3 cut(s) 179, 322, 593
BmgT120I GGNCC 4 cut(s) 179, 322, 593, 776
BmiI GGNNCC 1 cut(s) 1078
BmrFI CCNGG 4 cut(s) 251, 417, 658, 1112
BmsI GCATC 2 cut(s) 914, 984
BpmI CTGGAG 2 cut(s) 37, 945
BpuEI CTTGAG 2 cut(s) 71, 119
BpuMI CCSGG 1 cut(s) 1112
BsaI GGTCTC 1 cut(s) 1025
BsaJI CCNNGG 5 cut(s) 105, 147, 562, 596, 839
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 590, 691, 840, 841
Bse1I ACTGG 2 cut(s) 928, 1170
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 3 cut(s) 251, 417, 658
BseDI CCNNGG 5 cut(s) 105, 147, 562, 596, 839
BseGI GGATG 2 cut(s) 201, 975
BseLI CCNNNNNNNGG 5 cut(s) 219, 590, 691, 840, 841
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 5 cut(s) 26, 63, 128, 486, 725
BseNI ACTGG 2 cut(s) 928, 1170
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 2 cut(s) 536, 1053
BseXI GCAGC 3 cut(s) 97, 448, 1160
BseYI CCCAGC 3 cut(s) 213, 691, 1128
BsgI GTGCAG 1 cut(s) 447
BshFI GGCC 3 cut(s) 132, 778, 919
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 1112
BslFI GGGAC 2 cut(s) 76, 280
BslI CCNNNNNNNGG 5 cut(s) 219, 590, 691, 840, 841
BsmAI GTCTC 1 cut(s) 1025
BsmFI GGGAC 2 cut(s) 76, 280
BsmI GAATGC 2 cut(s) 451, 1130
BsnI GGCC 3 cut(s) 132, 778, 919
Bso31I GGTCTC 1 cut(s) 1025
Bsp1286I GDGCHC 3 cut(s) 536, 1053, 1236
Bsp143I GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
BspANI GGCC 3 cut(s) 132, 778, 919
BspCNI CTCAG 5 cut(s) 25, 64, 127, 487, 726
BspLI GGNNCC 1 cut(s) 1078
BspPI GGATC 2 cut(s) 26, 427
BspTNI GGTCTC 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 928, 1170
BssECI CCNNGG 5 cut(s) 105, 147, 562, 596, 839
BssMI GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
BssSI CACGAG 1 cut(s) 1060
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2BI CACGAG 1 cut(s) 1060
Bst2UI CCWGG 3 cut(s) 251, 417, 658
Bst4CI ACNGT 7 cut(s) 442, 600, 784, 809, 840, 1172, 1186
Bst6I CTCTTC 4 cut(s) 294, 510, 543, 1028
BstC8I GCNNGC 1 cut(s) 1236
BstDEI CTNAG 5 cut(s) 12, 72, 114, 495, 734
BstDSI CCRYGG 2 cut(s) 596, 839
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 201, 975
BstKTI GATC 8 cut(s) 34, 85, 358, 422, 589, 871, 1045, 1210
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
BstMWI GCNNNNNNNGC 3 cut(s) 56, 475, 1107
BstNI CCWGG 3 cut(s) 251, 417, 658
BstSCI CCNGG 4 cut(s) 249, 415, 656, 1110
BstSLI GKGCMC 2 cut(s) 536, 1053
BstV1I GCAGC 3 cut(s) 97, 448, 1160
BstX2I RGATCY 2 cut(s) 31, 82
BstYI RGATCY 2 cut(s) 31, 82
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 3 cut(s) 132, 778, 919
BtgI CCRYGG 2 cut(s) 596, 839
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 201, 975
BtsIMutI CAGTG 1 cut(s) 1182
Cac8I GCNNGC 1 cut(s) 1236
Cfr13I GGNCC 4 cut(s) 179, 322, 593, 776
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 2 cut(s) 426, 1065
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 3 cut(s) 176, 851, 1225
CviQI GTAC 2 cut(s) 426, 1065
DdeI CTNAG 5 cut(s) 12, 72, 114, 495, 734
DpnI GATC 8 cut(s) 33, 84, 357, 421, 588, 870, 1044, 1209
DpnII GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 4 cut(s) 294, 510, 543, 1028
EarI CTCTTC 4 cut(s) 294, 510, 543, 1028
Eco130I CCWWGG 2 cut(s) 105, 562
Eco147I AGGCCT 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 1236
Eco31I GGTCTC 1 cut(s) 1025
Eco47I GGWCC 3 cut(s) 179, 322, 593
Eco57I CTGAAG 1 cut(s) 893
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoRII CCWGG 3 cut(s) 249, 415, 656
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 1236
ErhI CCWWGG 2 cut(s) 105, 562
FaeI CATG 3 cut(s) 179, 854, 1228
FaqI GGGAC 2 cut(s) 76, 280
FatI CATG 3 cut(s) 175, 850, 1224
FauNDI CATATG 1 cut(s) 1215
FbaI TGATCA 2 cut(s) 586, 1042
Fnu4HI GCNGC 3 cut(s) 111, 462, 1149
FokI GGATG 2 cut(s) 208, 962
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 3 cut(s) 111, 462, 1149
GluI GCNGC 3 cut(s) 111, 462, 1149
GsaI CCCAGC 3 cut(s) 217, 695, 1132
GsuI CTGGAG 2 cut(s) 37, 945
HaeIII GGCC 3 cut(s) 132, 778, 919
HapII CCGG 1 cut(s) 1112
Hin1II CATG 3 cut(s) 179, 854, 1228
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 4 cut(s) 101, 577, 672, 1009
HpaII CCGG 1 cut(s) 1112
HphI GGTGA 5 cut(s) 9, 674, 866, 878, 1018
Hpy166II GTNNAC 3 cut(s) 534, 596, 1065
Hpy188I TCNGA 8 cut(s) 159, 355, 412, 524, 735, 873, 900, 970
Hpy188III TCNNGA 5 cut(s) 54, 245, 359, 434, 553
Hpy8I GTNNAC 3 cut(s) 534, 596, 1065
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 6 cut(s) 271, 356, 479, 555, 686, 895
HpyCH4III ACNGT 7 cut(s) 442, 600, 784, 809, 840, 1172, 1186
HpyCH4V TGCA 5 cut(s) 377, 449, 464, 534, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 475, 1107
HpyF3I CTNAG 5 cut(s) 12, 72, 114, 495, 734
Hsp92II CATG 3 cut(s) 179, 854, 1228
Ksp22I TGATCA 2 cut(s) 586, 1042
Kzo9I GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
LmnI GCTCC 1 cut(s) 926
Lsp1109I GCAGC 3 cut(s) 97, 448, 1160
LweI GCATC 2 cut(s) 914, 984
MabI ACCWGGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 15, 117, 208
MalI GATC 8 cut(s) 33, 84, 357, 421, 588, 870, 1044, 1209
MboI GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
MboII GAAGA 8 cut(s) 92, 311, 527, 530, 533, 1015, 1169, 1217
MfeI CAATTG 2 cut(s) 608, 890
MflI RGATCY 2 cut(s) 31, 82
MhlI GDGCHC 3 cut(s) 536, 1053, 1236
MluCI AATT 7 cut(s) 134, 314, 608, 622, 890, 958, 1240
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 5 cut(s) 456, 621, 641, 726, 1200
MslI CAYNNNNRTG 1 cut(s) 749
MspI CCGG 1 cut(s) 1112
MspR9I CCNGG 4 cut(s) 251, 417, 658, 1112
MunI CAATTG 2 cut(s) 608, 890
Mva1269I GAATGC 2 cut(s) 451, 1130
MvaI CCWGG 3 cut(s) 251, 417, 658
MwoI GCNNNNNNNGC 3 cut(s) 56, 475, 1107
NciI CCSGG 1 cut(s) 1112
NdeI CATATG 1 cut(s) 1215
NdeII GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
NlaIII CATG 3 cut(s) 179, 854, 1228
NlaIV GGNNCC 1 cut(s) 1078
NmuCI GTSAC 2 cut(s) 15, 117
NsiI ATGCAT 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 749
PceI AGGCCT 1 cut(s) 919
PctI GAATGC 2 cut(s) 451, 1130
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 577, 672, 1009
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 3 cut(s) 112, 463, 1150
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 3 cut(s) 249, 415, 656
PspFI CCCAGC 3 cut(s) 213, 691, 1128
PspGI CCWGG 3 cut(s) 249, 415, 656
PspN4I GGNNCC 1 cut(s) 1078
PspPI GGNCC 4 cut(s) 179, 322, 593, 776
PsuI RGATCY 2 cut(s) 31, 82
RsaI GTAC 2 cut(s) 427, 1066
RsaNI GTAC 2 cut(s) 426, 1065
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 5 cut(s) 456, 621, 641, 726, 1200
SatI GCNGC 3 cut(s) 111, 462, 1149
Sau3AI GATC 8 cut(s) 31, 82, 355, 419, 586, 868, 1042, 1207
Sau96I GGNCC 4 cut(s) 179, 322, 593, 776
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 4 cut(s) 251, 417, 658, 1112
SduI GDGCHC 3 cut(s) 536, 1053, 1236
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 2 cut(s) 914, 984
SinI GGWCC 3 cut(s) 179, 322, 593
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 86, 98
SmoI CTYRAG 2 cut(s) 86, 98
Sse9I AATT 7 cut(s) 134, 314, 608, 622, 890, 958, 1240
SseBI AGGCCT 1 cut(s) 919
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 4 cut(s) 249, 415, 656, 1110
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 7 cut(s) 442, 600, 784, 809, 840, 1172, 1186
TasI AATT 7 cut(s) 134, 314, 608, 622, 890, 958, 1240
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 3 cut(s) 577, 672, 1009
Tru1I TTAA 5 cut(s) 456, 621, 641, 726, 1200
Tru9I TTAA 5 cut(s) 456, 621, 641, 726, 1200
TscAI CASTG 1 cut(s) 1189
TseFI GTSAC 2 cut(s) 15, 117
TseI GCWGC 3 cut(s) 110, 461, 1148
Tsp45I GTSAC 2 cut(s) 15, 117
TspDTI ATGAA 6 cut(s) 127, 164, 295, 498, 778, 1170
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 1189
Van91I CCANNNNNTGG 1 cut(s) 691
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 3 cut(s) 179, 322, 593
VspI ATTAAT 1 cut(s) 621
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 2 cut(s) 958, 1240
XmnI GAANNNNTTC 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.