AT4G34150

C2 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011916
Physical Location & Seq
Forward (+)
16354857 .. 16357460
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34150.1

Sequence Viewer

Length: 744 bp
ATGTCGATGATGGCGGGTATACAAGGCCAGATTCTCGAGGTCACTGTTGTTGGGTGCCAGAAATTGAAAGACACGGAATGGTTTTCAAGACAAGATCCATACGTCGTCCTTGAGTATGGTGGCAGAAGTCACCGTACCAGAACCTGCACAGATGGTGGAAAGAACGCTGTTTTCCAAGAGAAGTTTATCTTCACTTTGATTGAAGGGCTTAGGGATCTTAAGGTTGCTGTCTGGAATAGCAACACTCTCTCCACTGATGACTTCATTGGCAATGCAACGATTCAATTGCAGAAAGTTCTTTCTCAGGAATACGACGACTGTACCTGGACTTTGCAGAGTAAAACTGGGAGATTCGCTGGAGAAGTACAACTCCTACTGCATTATGCGGGAGCAAAGAAACATAATTACGGGTCTGCGCCATCAGCACCGTATGCACCTCACGTACCTCAATACTCAGCACCGCCTTCTGCATCTCCGTATTCAACAGCACCACCATACTCTGGACCATCTCTATACCCACAAGTACAACAATACCCTCAGCCATCAGGATACCCTCCAGCTTCAGGGTATCCTCCTCAGCCATCTGCCTATCCACCTCCCTCAACCTCGGGCTACCCTCCGATCCCTTCAGCTTACCCACCTCCTCCGCCATCCTCAGCTTACCCTCCTCAACCATACCCTCCGCAACCATCATATTACCCACAAGGTCCATATCCAGGACAATACCCACCTCCTCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04620 map04620
Pfam Domains
Protein Families
C2

Protein Analysis

247

Amino Acids

27.05

Weight (kDa)

6.88

Isoelectric Point (pI)

69.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 11 - 104 2e-17 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34150
fragaria_vesca FvH4_2g05480
malus_domestica MD00G1045300.v1.1 MD05G1087200.v1.1
prunus_persica Prupe.8G131800_v2.0.a1 Prupe.8G131800_v2.0.a1
pyrus_communis pycom05g08650 pycom10g08200
rosa_chinensis RchiOBHm_Chr6g0255751
rosa_laevigata RLG00000014816
rosa_multiflora Rmu_sc0001163.1_g000008 Rmu_sc0001163.1_g000009
rosa_roxburghii Rroxscaffold_7G00209700
rosa_rugosa Rorug05G0561000 Rorug05G0561100
rosa_samantha Rh6BG072200 Rh6CG070400 Rh6DG067600
rosa_wichuraiana Rw6G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 1 cut(s) 19
AciI CCGC 5 cut(s) 14, 386, 461, 647, 683
AclWI GGATC 3 cut(s) 89, 222, 616
AcuI CTGAAG 2 cut(s) 546, 612
AfaI GTAC 5 cut(s) 136, 322, 366, 444, 525
AfiI CCNNNNNNNGG 3 cut(s) 500, 563, 716
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 5 cut(s) 67, 87, 203, 284, 483
AjnI CCWGG 2 cut(s) 323, 715
AluBI AGCT 3 cut(s) 560, 632, 659
AluI AGCT 3 cut(s) 560, 632, 659
AlwI GGATC 3 cut(s) 89, 222, 616
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 2 cut(s) 35, 607
AoxI GGCC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 503, 707
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 2 cut(s) 35, 607
AvaII GGWCC 2 cut(s) 503, 707
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BanI GGYRCC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BbvCI CCTCAGC 3 cut(s) 537, 576, 655
BccI CCATC 8 cut(s) 4, 146, 427, 514, 550, 589, 658, 697
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 2 cut(s) 325, 717
BciVI GTATCC 2 cut(s) 542, 579
BfaI CTAG 1 cut(s) 742
BfrI CTTAAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 2 cut(s) 542, 579
Bme1390I CCNGG 2 cut(s) 325, 717
Bme18I GGWCC 2 cut(s) 503, 707
BmeT110I CYCGRG 2 cut(s) 35, 607
BmgT120I GGNCC 2 cut(s) 503, 707
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 325, 717
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 378, 540
Bpu10I CCTNAGC 4 cut(s) 209, 537, 576, 655
BpuEI CTTGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 606
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 563, 716
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 2 cut(s) 325, 717
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 650
BseLI CCNNNNNNNGG 3 cut(s) 500, 563, 716
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 5 cut(s) 317, 468, 551, 590, 669
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 4 cut(s) 564, 633, 657, 723
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 54
BsiHKCI CYCGRG 2 cut(s) 35, 607
BslI CCNNNNNNNGG 3 cut(s) 500, 563, 716
BsnI GGCC 1 cut(s) 27
BsoBI CYCGRG 2 cut(s) 35, 607
Bsp143I GATC 3 cut(s) 94, 214, 621
BspACI CCGC 5 cut(s) 14, 386, 461, 647, 683
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 5 cut(s) 316, 467, 550, 589, 668
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 3 cut(s) 89, 222, 616
BspT107I GGYRCC 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 3 cut(s) 94, 214, 621
BssNAI GTATAC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 325, 717
Bst4CI ACNGT 4 cut(s) 46, 134, 320, 429
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 442
BstDEI CTNAG 6 cut(s) 209, 303, 454, 537, 576, 655
BstF5I GGATG 1 cut(s) 650
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 97, 217, 624
BstMBI GATC 3 cut(s) 94, 214, 621
BstMWI GCNNNNNNNGC 2 cut(s) 422, 431
BstNI CCWGG 2 cut(s) 325, 717
BstSCI CCNGG 2 cut(s) 323, 715
BstX2I RGATCY 2 cut(s) 94, 214
BstYI RGATCY 2 cut(s) 94, 214
BstZ17I GTATAC 1 cut(s) 20
BsuI GTATCC 2 cut(s) 542, 579
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 650
BtsIMutI CAGTG 2 cut(s) 42, 252
BveI ACCTGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 503, 707
Csp6I GTAC 5 cut(s) 135, 321, 365, 443, 524
CviJI RGCY 8 cut(s) 27, 208, 541, 560, 580, 612, 632, 659
CviKI_1 RGCY 8 cut(s) 27, 208, 541, 560, 580, 612, 632, 659
CviQI GTAC 5 cut(s) 135, 321, 365, 443, 524
DdeI CTNAG 6 cut(s) 209, 303, 454, 537, 576, 655
DpnI GATC 3 cut(s) 96, 216, 623
DpnII GATC 3 cut(s) 94, 214, 621
EciI GGCGGA 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 503, 707
Eco57I CTGAAG 2 cut(s) 546, 612
Eco88I CYCGRG 2 cut(s) 35, 607
EcoRII CCWGG 2 cut(s) 323, 715
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FauI CCCGC 2 cut(s) 7, 379
FblI GTMKAC 1 cut(s) 19
FokI GGATG 1 cut(s) 637
FspBI CTAG 1 cut(s) 742
GlaI GCGC 1 cut(s) 417
GsuI CTGGAG 2 cut(s) 378, 540
HaeIII GGCC 1 cut(s) 27
HhaI GCGC 1 cut(s) 418
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 3 cut(s) 31, 280, 351
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 6 cut(s) 35, 87, 232, 305, 501, 546
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 107, 317
HpyAV CCTTC 3 cut(s) 197, 474, 636
HpyCH4III ACNGT 4 cut(s) 46, 134, 320, 429
HpyCH4IV ACGT 2 cut(s) 102, 441
HpyCH4V TGCA 7 cut(s) 147, 275, 289, 334, 379, 434, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 431
HpyF3I CTNAG 6 cut(s) 209, 303, 454, 537, 576, 655
HpySE526I ACGT 2 cut(s) 102, 441
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 3 cut(s) 94, 214, 621
LmnI GCTCC 1 cut(s) 389
LweI GCATC 1 cut(s) 479
MaeI CTAG 1 cut(s) 742
MaeII ACGT 2 cut(s) 102, 441
MaeIII GTNAC 2 cut(s) 40, 128
MalI GATC 3 cut(s) 96, 216, 623
MboI GATC 3 cut(s) 94, 214, 621
MboII GAAGA 1 cut(s) 181
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 2 cut(s) 94, 214
MluCI AATT 3 cut(s) 62, 284, 403
MseI TTAA 1 cut(s) 219
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 325, 717
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 2 cut(s) 325, 717
MwoI GCNNNNNNNGC 2 cut(s) 422, 431
NdeII GATC 3 cut(s) 94, 214, 621
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 40, 128
PaeR7I CTCGAG 1 cut(s) 35
PfeI GAWTC 3 cut(s) 31, 280, 351
PflMI CCANNNNNTGG 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 715
Ppu21I YACGTR 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 323, 715
PspGI CCWGG 2 cut(s) 323, 715
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 503, 707
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 2 cut(s) 94, 214
RsaI GTAC 5 cut(s) 136, 322, 366, 444, 525
RsaNI GTAC 5 cut(s) 135, 321, 365, 443, 524
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 3 cut(s) 94, 214, 621
Sau96I GGNCC 2 cut(s) 503, 707
ScrFI CCNGG 2 cut(s) 325, 717
SfaNI GCATC 1 cut(s) 479
Sfr274I CTCGAG 1 cut(s) 35
SinI GGWCC 2 cut(s) 503, 707
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 3 cut(s) 35, 110, 218
SmoI CTYRAG 3 cut(s) 35, 110, 218
Sse9I AATT 3 cut(s) 62, 284, 403
SsiI CCGC 5 cut(s) 14, 386, 461, 647, 683
SspMI CTAG 1 cut(s) 742
StyD4I CCNGG 2 cut(s) 323, 715
TaaI ACNGT 4 cut(s) 46, 134, 320, 429
TaiI ACGT 2 cut(s) 105, 444
TaqI TCGA 2 cut(s) 5, 36
TasI AATT 3 cut(s) 62, 284, 403
TatI WGTACW 2 cut(s) 364, 523
TfiI GAWTC 3 cut(s) 31, 280, 351
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 49, 259
TseFI GTSAC 2 cut(s) 40, 128
Tsp45I GTSAC 2 cut(s) 40, 128
TspDTI ATGAA 1 cut(s) 253
TspGWI ACGGA 2 cut(s) 89, 465
TspRI CASTG 2 cut(s) 49, 259
Van91I CCANNNNNTGG 1 cut(s) 500
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 503, 707
XhoI CTCGAG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.