Rh6DG067600

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011916
Physical Location & Seq
Reverse (-)
6889150 .. 6892275
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG067600.1

Sequence Viewer

Length: 960 bp
ATGTCATATTATCAATTTCCAACCGAGTCTTCTTCTTCGTCTTCGTCTCCTTACTCCTCTTTTCCTATGTCGATTTCTGGTATTCAAGGCCAGCTTCTTGAGGTCACTGTTGTTGGATGCAATAAGTTGAAAGATACAGAATGGATTTCGCGGCAAGATCCCTACGTTTGTGTTGCATATGCTAACTCAAAGTTCCGAACAAGAACGCATACTGGTTCAGATCCGAATTTGGACTCGAACTGGACTGAGACCCATGTTGATTTTAATGGTGTAGACGGAGGTAGAAACCCTACATTCCAAGAGAAGTTCGTGATTCCTCTAATTGAAGGGCTTAGGGAGATGAATGTTAATGTCTGGAACAGCAACAGTGTCACATATGACGACTTTATTGGCGAGGGAAAGGTTCAACTTCAGAAGGTTCTGTCTCAGGGTTACGATGATGGTACTTGGCCACTTCAGACTAAAACGGGCAGATATGCTGGAGAAGTGCGGCTTATAATGCATTACTCAAAGCCTAATATAAGTGCAAAGCCAAATAAACCGGCAGCAGGCTATGCCCCATCCGCACCACCTTATGGAGCACCACCTGCACCGCAAGCTCATATGTACTCAACTCCCCCTCCAGCATCTGCATATGCACCACCACCTCAAATGTACGCACCACCTCCACCAGCAGCTTACCCAGCTCCAGCTCCATCTCCCTATCCTTCGTATTCACCCACTCCTTCATATCCACCCAATCCAGCACCAGCTGCGTATCCACCTAACCCCGCACCAGGAGGATATCCACCATCCCCGTACGGTGCCCCTCCACCTGCTGCATATCCTCCCGCACCATACCCACCATCTTCAACGTATCCTCCTCCTCCATCATCTACATACCCACCACCTCCACAAGCCTCATCGTTTTACCCTCCACCTCAAGGTCCGTATGGAGTATATCCACCACCACCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04620 map04620
Pfam Domains
Protein Families
C2

Protein Analysis

319

Amino Acids

34.34

Weight (kDa)

6.07

Isoelectric Point (pI)

80.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 81 - 144 1.6e-06 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34150
fragaria_vesca FvH4_2g05480
malus_domestica MD00G1045300.v1.1 MD05G1087200.v1.1
prunus_persica Prupe.8G131800_v2.0.a1 Prupe.8G131800_v2.0.a1
pyrus_communis pycom05g08650 pycom10g08200
rosa_chinensis RchiOBHm_Chr6g0255751
rosa_laevigata RLG00000014816
rosa_multiflora Rmu_sc0001163.1_g000008 Rmu_sc0001163.1_g000009
rosa_roxburghii Rroxscaffold_7G00209700
rosa_rugosa Rorug05G0561000 Rorug05G0561100
rosa_samantha Rh6BG072200 Rh6CG070400 Rh6DG067600
rosa_wichuraiana Rw6G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AarI CACCTGC 2 cut(s) 595, 823
Acc36I ACCTGC 2 cut(s) 595, 823
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 151
AciI CCGC 6 cut(s) 151, 490, 564, 593, 771, 831
AclWI GGATC 2 cut(s) 152, 215
AcoI YGGCCR 1 cut(s) 449
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 395, 440
AfaI GTAC 4 cut(s) 445, 608, 656, 800
AfiI CCNNNNNNNGG 4 cut(s) 548, 575, 776, 923
AgsI TTSAA 5 cut(s) 86, 130, 326, 407, 852
AjnI CCWGG 1 cut(s) 775
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 6 cut(s) 94, 599, 677, 686, 692, 752
AluI AGCT 6 cut(s) 94, 599, 677, 686, 692, 752
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 51, 242, 429
AlwI GGATC 2 cut(s) 152, 215
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 2 cut(s) 88, 449
ApeKI GCWGC 4 cut(s) 545, 674, 752, 818
ApoI RAATTY 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 926
AsuHPI GGTGA 1 cut(s) 708
AvaII GGWCC 1 cut(s) 926
BaeGI GKGCMC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 451
BanI GGYRCC 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 21, 33
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 4 cut(s) 557, 686, 739, 805
BccI CCATC 6 cut(s) 434, 568, 703, 799, 853, 877
BciT130I CCWGG 1 cut(s) 777
BciVI GTATCC 2 cut(s) 768, 867
BcoDI GTCTC 3 cut(s) 51, 242, 429
BfuAI ACCTGC 2 cut(s) 595, 823
BfuI GTATCC 2 cut(s) 768, 867
BisI GCNGC 6 cut(s) 152, 491, 546, 675, 753, 819
BlsI GCNGC 6 cut(s) 153, 492, 547, 676, 754, 820
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 1 cut(s) 805
BmrFI CCNGG 1 cut(s) 777
BmsI GCATC 2 cut(s) 107, 635
BpiI GAAGAC 2 cut(s) 21, 33
BpmI CTGGAG 3 cut(s) 501, 606, 672
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 119, 906
BsaI GGTCTC 1 cut(s) 242
BsaXI ACNNNNNCTCC 4 cut(s) 604, 634, 844, 874
Bsc4I CCNNNNNNNGG 4 cut(s) 548, 575, 776, 923
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 217, 245
BseBI CCWGG 1 cut(s) 777
BseGI GGATG 3 cut(s) 122, 560, 791
BseLI CCNNNNNNNGG 4 cut(s) 548, 575, 776, 923
BseMII CTCAG 2 cut(s) 237, 440
BseNI ACTGG 2 cut(s) 217, 245
BseRI GAGGAG 3 cut(s) 46, 852, 855
BseSI GKGCMC 1 cut(s) 808
BseXI GCAGC 4 cut(s) 557, 686, 739, 805
BseYI CCCAGC 1 cut(s) 682
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 90, 451
BshNI GGYRCC 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 1 cut(s) 542
BsiWI CGTACG 1 cut(s) 798
BslI CCNNNNNNNGG 4 cut(s) 548, 575, 776, 923
BsmAI GTCTC 3 cut(s) 51, 242, 429
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 2 cut(s) 90, 451
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 583, 808
Bsp143I GATC 2 cut(s) 157, 220
BspACI CCGC 6 cut(s) 151, 490, 564, 593, 771, 831
BspANI GGCC 2 cut(s) 90, 451
BspCNI CTCAG 2 cut(s) 238, 439
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 805
BspMI ACCTGC 2 cut(s) 595, 823
BspPI GGATC 2 cut(s) 152, 215
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 2 cut(s) 217, 245
BssAI RCCGGY 1 cut(s) 541
BssMI GATC 2 cut(s) 157, 220
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 3 cut(s) 109, 368, 803
BstAPI GCANNNNNTGC 3 cut(s) 554, 587, 752
BstC8I GCNNGC 3 cut(s) 92, 550, 597
BstDEI CTNAG 3 cut(s) 246, 332, 426
BstF5I GGATG 3 cut(s) 122, 560, 791
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 2 cut(s) 160, 223
BstMAI GTCTC 3 cut(s) 51, 242, 429
BstMBI GATC 2 cut(s) 157, 220
BstMWI GCNNNNNNNGC 7 cut(s) 499, 554, 563, 587, 596, 683, 752
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 775
BstSLI GKGCMC 1 cut(s) 808
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 4 cut(s) 557, 686, 739, 805
BstV2I GAAGAC 2 cut(s) 21, 33
BstX2I RGATCY 2 cut(s) 157, 220
BstYI RGATCY 2 cut(s) 157, 220
BsuI GTATCC 2 cut(s) 768, 867
BsuRI GGCC 2 cut(s) 90, 451
BtsCI GGATG 3 cut(s) 122, 560, 791
BtsIMutI CAGTG 2 cut(s) 105, 373
BveI ACCTGC 2 cut(s) 595, 823
Cac8I GCNNGC 3 cut(s) 92, 550, 597
CaiI CAGNNNCTG 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 926
Csp6I GTAC 4 cut(s) 444, 607, 655, 799
CviAII CATG 1 cut(s) 254
CviQI GTAC 4 cut(s) 444, 607, 655, 799
DdeI CTNAG 3 cut(s) 246, 332, 426
DpnI GATC 2 cut(s) 159, 222
DpnII GATC 2 cut(s) 157, 220
EaeI YGGCCR 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 395, 440
EcoRII CCWGG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 504
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 1 cut(s) 257
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 477, 509
FatI CATG 1 cut(s) 253
FauI CCCGC 2 cut(s) 778, 838
FauNDI CATATG 4 cut(s) 178, 376, 603, 634
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 152, 491, 546, 675, 753, 819
FokI GGATG 3 cut(s) 129, 547, 778
Fsp4HI GCNGC 6 cut(s) 152, 491, 546, 675, 753, 819
GluI GCNGC 6 cut(s) 152, 491, 546, 675, 753, 819
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 3 cut(s) 501, 606, 672
HaeIII GGCC 2 cut(s) 90, 451
HapII CCGG 1 cut(s) 542
Hin1II CATG 1 cut(s) 257
HinfI GANTC 3 cut(s) 26, 233, 313
HpaII CCGG 1 cut(s) 542
HphI GGTGA 1 cut(s) 708
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 197, 220, 225, 414, 459
Hpy188III TCNNGA 3 cut(s) 98, 310, 355
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 4 cut(s) 320, 409, 717, 735
HpyCH4III ACNGT 3 cut(s) 109, 368, 803
HpyCH4IV ACGT 2 cut(s) 165, 854
HpyCH4V TGCA 8 cut(s) 120, 176, 502, 527, 590, 632, 638, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 499, 554, 563, 587, 596, 683, 752
HpyF3I CTNAG 3 cut(s) 246, 332, 426
HpySE526I ACGT 2 cut(s) 165, 854
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 157, 220
LmnI GCTCC 3 cut(s) 578, 691, 697
Lsp1109I GCAGC 4 cut(s) 557, 686, 739, 805
LweI GCATC 2 cut(s) 107, 635
MaeII ACGT 2 cut(s) 165, 854
MaeIII GTNAC 3 cut(s) 103, 370, 431
MalI GATC 2 cut(s) 159, 222
MboI GATC 2 cut(s) 157, 220
MboII GAAGA 5 cut(s) 21, 24, 27, 33, 840
MflI RGATCY 2 cut(s) 157, 220
MhlI GDGCHC 2 cut(s) 583, 808
MlsI TGGCCA 1 cut(s) 451
MluCI AATT 3 cut(s) 14, 226, 321
MluNI TGGCCA 1 cut(s) 451
MlyI GAGTC 2 cut(s) 35, 227
MmeI TCCRAC 2 cut(s) 44, 94
Mox20I TGGCCA 1 cut(s) 451
Mph1103I ATGCAT 1 cut(s) 504
MscI TGGCCA 1 cut(s) 451
MseI TTAA 2 cut(s) 264, 348
Msp20I TGGCCA 1 cut(s) 451
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 777
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 7 cut(s) 499, 554, 563, 587, 596, 683, 752
NdeI CATATG 4 cut(s) 178, 376, 603, 634
NdeII GATC 2 cut(s) 157, 220
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 805
NmuCI GTSAC 2 cut(s) 103, 370
NsiI ATGCAT 1 cut(s) 504
PaqCI CACCTGC 2 cut(s) 595, 823
PfeI GAWTC 1 cut(s) 313
Pfl23II CGTACG 1 cut(s) 798
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 6 cut(s) 153, 492, 547, 676, 754, 820
PleI GAGTC 2 cut(s) 34, 227
PpsI GAGTC 2 cut(s) 34, 227
PsiI TTATAA 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 775
PspLI CGTACG 1 cut(s) 798
PspN4I GGNNCC 1 cut(s) 805
PspPI GGNCC 1 cut(s) 926
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 157, 220
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 445, 608, 656, 800
RsaNI GTAC 4 cut(s) 444, 607, 655, 799
SaqAI TTAA 2 cut(s) 264, 348
SatI GCNGC 6 cut(s) 152, 491, 546, 675, 753, 819
Sau3AI GATC 2 cut(s) 157, 220
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 2 cut(s) 35, 227
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 2 cut(s) 583, 808
SfaNI GCATC 2 cut(s) 107, 635
SinI GGWCC 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 98, 921
SmoI CTYRAG 2 cut(s) 98, 921
Sse9I AATT 3 cut(s) 14, 226, 321
SsiI CCGC 6 cut(s) 151, 490, 564, 593, 771, 831
StyD4I CCNGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 109, 368, 803
TaiI ACGT 2 cut(s) 168, 857
TaqI TCGA 2 cut(s) 71, 236
TasI AATT 3 cut(s) 14, 226, 321
TatI WGTACW 1 cut(s) 606
TauI GCSGC 2 cut(s) 154, 493
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 264, 348
Tru9I TTAA 2 cut(s) 264, 348
TscAI CASTG 2 cut(s) 112, 373
TseFI GTSAC 2 cut(s) 103, 370
TseI GCWGC 4 cut(s) 545, 674, 752, 818
Tsp45I GTSAC 2 cut(s) 103, 370
TspDTI ATGAA 2 cut(s) 356, 717
TspGWI ACGGA 2 cut(s) 291, 918
TspRI CASTG 2 cut(s) 112, 373
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 926
XapI RAATTY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.