pycom05g08650

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
11331523 .. 11332852
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08650.3

Sequence Viewer

Length: 459 bp
ATGCCAAGATTTCAACTTTCATCTTCCTATTCGTCTGCACCTTACTACTTATCGTTTCCTCCCGACTGTTCCTCCATGTCGATTTCTGGAATTCAAGGCCAGCTTCTTGAAGTCACTGTTATTGGTTGTAACAAATTGAGAGATACGGAATGGATTTCACGGCAGGACCCATATGTCTGTCTTGAATATGCTAACACCAAGCACCGCACCAGAACATGCACAGACGGCGGTAAACATCCCACATTCCAAGAGAAGTTCGTGTTTCCGCTGGTTGAAGGTCTTAGGGAAATCAGTGTTATGGTCTGGAACAGCAATACTGTCACATCGGACGACTTCATTGGCGGGGGAAAGGTTCAACTTCAGAAGGTTCTTACTCAGGGTTATGATGACAGCGCATGGCCGCTTCAGACTAAACATGGCCGGCAAAGAAACAGCTATTCATTGTGTGATTATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.26

Weight (kDa)

6.29

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011916)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AciI CCGC 5 cut(s) 205, 228, 266, 342, 401
AcoI YGGCCR 2 cut(s) 398, 418
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 2 cut(s) 344, 389
AgsI TTSAA 6 cut(s) 14, 95, 110, 185, 275, 356
AluBI AGCT 2 cut(s) 103, 435
AluI AGCT 2 cut(s) 103, 435
AoxI GGCC 3 cut(s) 97, 398, 418
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 176, 241
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 1 cut(s) 420
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 21
BshFI GGCC 3 cut(s) 99, 400, 420
BsiSI CCGG 1 cut(s) 421
BsnI GGCC 3 cut(s) 99, 400, 420
BspACI CCGC 5 cut(s) 205, 228, 266, 342, 401
BspANI GGCC 3 cut(s) 99, 400, 420
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 68, 118, 319
BstC8I GCNNGC 2 cut(s) 101, 422
BstDEI CTNAG 2 cut(s) 281, 375
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 219
BsuRI GGCC 3 cut(s) 99, 400, 420
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 114, 298
Cac8I GCNNGC 2 cut(s) 101, 422
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 4 cut(s) 76, 216, 396, 416
CviJI RGCY 5 cut(s) 99, 103, 400, 420, 435
CviKI_1 RGCY 5 cut(s) 99, 103, 400, 420, 435
DdeI CTNAG 2 cut(s) 281, 375
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 398, 418
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 344, 389
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 90
FaeI CATG 4 cut(s) 79, 219, 399, 419
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 4 cut(s) 75, 215, 395, 415
FauI CCCGC 1 cut(s) 335
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 401
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 401
HaeIII GGCC 3 cut(s) 99, 400, 420
HapII CCGG 1 cut(s) 421
HhaI GCGC 1 cut(s) 395
Hin1II CATG 4 cut(s) 79, 219, 399, 419
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HpaII CCGG 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 328, 363, 408
Hpy188III TCNNGA 5 cut(s) 62, 87, 107, 182, 304
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 269, 358
HpyCH4III ACNGT 3 cut(s) 68, 118, 319
HpyCH4V TGCA 2 cut(s) 38, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 281, 375
Hsp92II CATG 4 cut(s) 79, 219, 399, 419
HspAI GCGC 1 cut(s) 393
KroI GCCGGC 1 cut(s) 420
KroNI GCCGGC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 72, 113, 149, 223, 254, 289, 362, 434
MaeIII GTNAC 3 cut(s) 112, 128, 319
MboII GAAGA 1 cut(s) 15
MluCI AATT 2 cut(s) 90, 134
MnlI CCTC 2 cut(s) 69, 82
MroNI GCCGGC 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 225
NaeI GCCGGC 1 cut(s) 422
NdeI CATATG 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 420
NlaIII CATG 4 cut(s) 79, 219, 399, 419
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 112, 319
NspI RCATGY 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 422
PkrI GCNGC 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
SatI GCNGC 1 cut(s) 401
Sau96I GGNCC 1 cut(s) 166
SetI ASST 6 cut(s) 43, 105, 280, 354, 369, 437
SinI GGWCC 1 cut(s) 166
Sse9I AATT 2 cut(s) 90, 134
SsiI CCGC 5 cut(s) 205, 228, 266, 342, 401
TaaI ACNGT 3 cut(s) 68, 118, 319
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 90, 134
TauI GCSGC 1 cut(s) 403
TscAI CASTG 2 cut(s) 121, 298
TseFI GTSAC 2 cut(s) 112, 319
Tsp45I GTSAC 2 cut(s) 112, 319
TspDTI ATGAA 3 cut(s) 9, 325, 429
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 121, 298
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.