Rmu_sc0001163.1_g000008

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001163.1
Physical Location & Seq
Reverse (-)
34112 .. 34782
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001163.1_g000008.1.cds

Sequence Viewer

Length: 462 bp
atgcattactcgaagcctgatataagtgcaaagcctaataaactggcagcaggctatgccccatctgcaccaccttatggagcaccacctgcaccgcaagctcatatgtactcaactccccctccagcatctgcgtatgcaccaccacctcaaatgtatgcaccacctccaccagcagcttacccagctccagctccatctccctatccttcgtattcacctactccttcatatccacccaatccagcaccagctgcgtatccacctaatcccgcaccaggaagatatccaccatccccgtacggtgcccctccaccagctgcatatcctcctgcaccatacccaccatcttcaacttatcctcctcctccatcatctacatatccaccacctccacaagcctcatcgttttaccctccacctcaaggtccatatggagtatatccaccaccaccatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

15.84

Weight (kDa)

8.96

Isoelectric Point (pI)

117.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011916)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 77
AciI CCGC 2 cut(s) 95, 273
AfaI GTAC 2 cut(s) 110, 302
AfiI CCNNNNNNNGG 3 cut(s) 77, 278, 425
AgsI TTSAA 1 cut(s) 354
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 6 cut(s) 101, 179, 188, 194, 254, 320
AluI AGCT 6 cut(s) 101, 179, 188, 194, 254, 320
Alw21I GWGCWC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 131
ApeKI GCWGC 4 cut(s) 47, 176, 254, 320
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 59, 188, 241, 307
BccI CCATC 5 cut(s) 70, 205, 301, 355, 379
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 97
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 4 cut(s) 48, 177, 255, 321
BlsI GCNGC 4 cut(s) 49, 178, 256, 322
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 108, 174
BpuEI CTTGAG 1 cut(s) 408
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 346, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 278, 425
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 77, 278, 425
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 354, 357
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 4 cut(s) 59, 188, 241, 307
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 3 cut(s) 51, 75, 318
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 85
BsiWI CGTACG 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 77, 278, 425
Bsp1286I GDGCHC 2 cut(s) 85, 310
BspACI CCGC 2 cut(s) 95, 273
BspLI GGNNCC 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 305
BstAPI GCANNNNNTGC 3 cut(s) 56, 89, 254
BstC8I GCNNGC 2 cut(s) 52, 99
BstF5I GGATG 1 cut(s) 293
BstMWI GCNNNNNNNGC 6 cut(s) 56, 65, 89, 98, 185, 254
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 4 cut(s) 59, 188, 241, 307
BsuI GTATCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 52, 99
CaiI CAGNNNCTG 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 109, 301
CviQI GTAC 2 cut(s) 109, 301
Eco32I GATATC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 6
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 2 cut(s) 105, 433
Fnu4HI GCNGC 4 cut(s) 48, 177, 255, 321
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 4 cut(s) 48, 177, 255, 321
GluI GCNGC 4 cut(s) 48, 177, 255, 321
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 108, 174
HphI GGTGA 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 219, 237
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 8 cut(s) 4, 29, 68, 92, 140, 161, 323, 335
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 65, 89, 98, 185, 254
LmnI GCTCC 3 cut(s) 80, 193, 199
Lsp1109I GCAGC 4 cut(s) 59, 188, 241, 307
LweI GCATC 1 cut(s) 137
MboII GAAGA 2 cut(s) 294, 342
MhlI GDGCHC 2 cut(s) 85, 310
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 2 cut(s) 254, 320
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 6 cut(s) 56, 65, 89, 98, 185, 254
NdeI CATATG 2 cut(s) 105, 433
NlaIV GGNNCC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 97
Pfl23II CGTACG 1 cut(s) 300
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 49, 178, 256, 322
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 277
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 254, 320
RsaI GTAC 2 cut(s) 110, 302
RsaNI GTAC 2 cut(s) 109, 301
SatI GCNGC 4 cut(s) 48, 177, 255, 321
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 2 cut(s) 85, 310
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
SsiI CCGC 2 cut(s) 95, 273
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 11
TatI WGTACW 1 cut(s) 108
TseI GCWGC 4 cut(s) 47, 176, 254, 320
TspDTI ATGAA 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.