Rh6BG072200

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011916
Physical Location & Seq
Reverse (-)
10907651 .. 10911279
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG072200.1

Sequence Viewer

Length: 1056 bp
ATGACTTTTATACCCCAAACTGGGATTTCATGCGCAATTACCTCGGTTCCTTCTCAGAATCTCAGTAATCCAAATTTTACTTTCAACGAAGTAAAAAATCTTTACGTAGACCATATACGCGGAATCGAATACTATAAAAACGGTCAAAGGTACAGACCTTACGGAGATCACATGTCATATTATCAATTTCCAACTCAGTCTTCTTCGTCTTCCTCTTTTCCCATGTCGACTTCTGGTATTCAAGGCCAGCTTCTTGAGGTCACTGTTGTTGGGTGCAATAAGTTGAAAGATACAGAATGGATTTCGCGGCAAGATCCCTACGTTTGTGTTGAATATGCTAACTCCAAGCACAGAACAAGAACGCATACTGACGGAGGTAGAAACCCTACATTCCAAGAGAAGTTCGTGATTCCTCTAATTGAAGGGCTTAGGGAGATGAATGTTGCTGTCTGGAACAGCAACAGTGTCACATATGACGACTTTATTGGCGAGGGAAAAGTACACCTTCAGAAGGTTCTGTCTCAGGGTTACGATGATGGTACTTGGCCACTTCAGACTAAAACGGGCAGATATGCTGGAGAAGTGCGGCTTATAATGCATTACTCGAAGCCTGATATAAGTGCAAAGCCTAATAAACTGGCAGCAGGCTATGCCCCATCTGCACCACCTTATGGAGCACCACCTGCACCGCAAGCTCATATGTACTCAACTCCCCCTCCAGCATCTGCGTATGCACCACCACGTCAAATGTATGCACCACCTCCACCAGCAGCTTACCCAGCTCCAGCTCCATCTCCCTATCCTTCGTATTCACCTACTCCTTCATATCCACCCAATCCAGCACCAGCTGCGTATCCACCTAATCCCGCACCAGGAGGATATCCACCATCCCCGTACGGTGCCCCTCCACCAGCTGCATATCCTCCTGCACCATACCCACCATCTTCAACTTATCCTCCTCCTCCATCATCTACATATCCACCACCTCCACAAGCCTCATCATTTTACCCTCCACCTCAAGGTCCATATGGAGTATATCCACCACCACCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04620 map04620
Pfam Domains
Protein Families
C2

Protein Analysis

351

Amino Acids

38.29

Weight (kDa)

8.49

Isoelectric Point (pI)

73.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 84 - 176 9.1e-16 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34150
fragaria_vesca FvH4_2g05480
malus_domestica MD00G1045300.v1.1 MD05G1087200.v1.1
prunus_persica Prupe.8G131800_v2.0.a1 Prupe.8G131800_v2.0.a1
pyrus_communis pycom05g08650 pycom10g08200
rosa_chinensis RchiOBHm_Chr6g0255751
rosa_laevigata RLG00000014816
rosa_multiflora Rmu_sc0001163.1_g000008 Rmu_sc0001163.1_g000009
rosa_roxburghii Rroxscaffold_7G00209700
rosa_rugosa Rorug05G0561000 Rorug05G0561100
rosa_samantha Rh6BG072200 Rh6CG070400 Rh6DG067600
rosa_wichuraiana Rw6G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AarI CACCTGC 1 cut(s) 691
Acc16I TGCGCA 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 691
AccB1I GGYRCC 1 cut(s) 899
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 2 cut(s) 108, 227
AccII CGCG 2 cut(s) 120, 307
AciI CCGC 5 cut(s) 120, 307, 586, 689, 867
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 491, 536
AfaI GTAC 5 cut(s) 152, 501, 541, 704, 896
AfiI CCNNNNNNNGG 6 cut(s) 20, 21, 511, 671, 872, 1019
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 6 cut(s) 85, 242, 286, 332, 422, 948
AjiI CACGTC 1 cut(s) 743
AjnI CCWGG 1 cut(s) 871
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 7 cut(s) 250, 695, 773, 782, 788, 848, 914
AluI AGCT 7 cut(s) 250, 695, 773, 782, 788, 848, 914
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 2 cut(s) 244, 545
ApeKI GCWGC 4 cut(s) 641, 770, 848, 914
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 1022
AsuHPI GGTGA 1 cut(s) 804
AvaII GGWCC 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 904
BalI TGGCCA 1 cut(s) 547
BanI GGYRCC 1 cut(s) 899
BbsI GAAGAC 2 cut(s) 192, 201
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 4 cut(s) 653, 782, 835, 901
BccI CCATC 6 cut(s) 530, 664, 799, 895, 949, 973
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 1 cut(s) 873
BciVI GTATCC 1 cut(s) 864
BcoDI GTCTC 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 6 cut(s) 308, 587, 642, 771, 849, 915
BlsI GCNGC 6 cut(s) 309, 588, 643, 772, 850, 916
Bme1390I CCNGG 1 cut(s) 873
Bme18I GGWCC 1 cut(s) 1022
BmgBI CACGTC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 1022
BmiI GGNNCC 2 cut(s) 48, 901
BmrFI CCNGG 1 cut(s) 873
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 192, 201
BpmI CTGGAG 3 cut(s) 597, 702, 768
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 275, 1002
BsaAI YACGTR 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 4 cut(s) 700, 730, 940, 970
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 21, 511, 671, 872, 1019
Bse1I ACTGG 2 cut(s) 25, 642
BseBI CCWGG 1 cut(s) 873
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 887
BseLI CCNNNNNNNGG 6 cut(s) 20, 21, 511, 671, 872, 1019
BseMII CTCAG 4 cut(s) 68, 76, 209, 536
BseNI ACTGG 2 cut(s) 25, 642
BseRI GAGGAG 2 cut(s) 948, 951
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 4 cut(s) 653, 782, 835, 901
BseYI CCCAGC 1 cut(s) 778
BsgI GTGCAG 3 cut(s) 645, 669, 912
Bsh1236I CGCG 2 cut(s) 120, 307
BshFI GGCC 2 cut(s) 246, 547
BshNI GGYRCC 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 679
BsiWI CGTACG 1 cut(s) 894
BslI CCNNNNNNNGG 6 cut(s) 20, 21, 511, 671, 872, 1019
BsmAI GTCTC 1 cut(s) 525
BsnI GGCC 2 cut(s) 246, 547
Bsp1286I GDGCHC 2 cut(s) 679, 904
Bsp143I GATC 2 cut(s) 166, 313
BspACI CCGC 5 cut(s) 120, 307, 586, 689, 867
BspANI GGCC 2 cut(s) 246, 547
BspCNI CTCAG 4 cut(s) 67, 75, 208, 535
BspFNI CGCG 2 cut(s) 120, 307
BspLI GGNNCC 2 cut(s) 48, 901
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 899
BsrI ACTGG 2 cut(s) 25, 642
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 166, 313
Bst2UI CCWGG 1 cut(s) 873
Bst4CI ACNGT 4 cut(s) 143, 265, 464, 899
BstAPI GCANNNNNTGC 3 cut(s) 650, 683, 848
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 248, 646, 693
BstDEI CTNAG 5 cut(s) 54, 62, 195, 428, 522
BstENI CCTNNNNNAGG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 887
BstFNI CGCG 2 cut(s) 120, 307
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 169, 316
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 2 cut(s) 166, 313
BstMWI GCNNNNNNNGC 7 cut(s) 595, 650, 659, 683, 692, 779, 848
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 871
BstSLI GKGCMC 1 cut(s) 904
BstSNI TACGTA 1 cut(s) 106
BstUI CGCG 2 cut(s) 120, 307
BstV1I GCAGC 4 cut(s) 653, 782, 835, 901
BstV2I GAAGAC 2 cut(s) 192, 201
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 2 cut(s) 246, 547
BtrI CACGTC 1 cut(s) 743
BtsCI GGATG 1 cut(s) 887
BtsIMutI CAGTG 2 cut(s) 261, 469
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 3 cut(s) 248, 646, 693
CaiI CAGNNNCTG 1 cut(s) 725
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 1022
Csp6I GTAC 5 cut(s) 151, 500, 540, 703, 895
CviAII CATG 3 cut(s) 30, 172, 223
CviQI GTAC 5 cut(s) 151, 500, 540, 703, 895
DdeI CTNAG 5 cut(s) 54, 62, 195, 428, 522
DpnI GATC 2 cut(s) 168, 315
DpnII GATC 2 cut(s) 166, 313
EaeI YGGCCR 1 cut(s) 545
Eco105I TACGTA 1 cut(s) 106
Eco32I GATATC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 1022
Eco57I CTGAAG 2 cut(s) 491, 536
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 871
EcoRV GATATC 1 cut(s) 881
EcoT22I ATGCAT 1 cut(s) 600
FaeI CATG 3 cut(s) 33, 175, 226
FalI AAGNNNNNCTT 6 cut(s) 234, 266, 489, 521, 573, 605
FatI CATG 3 cut(s) 29, 171, 222
FauI CCCGC 1 cut(s) 874
FauNDI CATATG 3 cut(s) 472, 699, 1027
FblI GTMKAC 2 cut(s) 108, 227
Fnu4HI GCNGC 6 cut(s) 308, 587, 642, 771, 849, 915
FokI GGATG 1 cut(s) 874
Fsp4HI GCNGC 6 cut(s) 308, 587, 642, 771, 849, 915
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 1 cut(s) 34
GluI GCNGC 6 cut(s) 308, 587, 642, 771, 849, 915
GsaI CCCAGC 1 cut(s) 782
GsuI CTGGAG 3 cut(s) 597, 702, 768
HaeIII GGCC 2 cut(s) 246, 547
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 33, 175, 226
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 58, 123, 409
HphI GGTGA 1 cut(s) 804
Hpy166II GTNNAC 3 cut(s) 109, 228, 502
Hpy188I TCNGA 3 cut(s) 57, 510, 555
Hpy188III TCNNGA 3 cut(s) 254, 406, 451
Hpy8I GTNNAC 3 cut(s) 109, 228, 502
HpyAV CCTTC 6 cut(s) 60, 416, 505, 515, 813, 831
HpyCH4III ACNGT 4 cut(s) 143, 265, 464, 899
HpyCH4IV ACGT 3 cut(s) 105, 321, 742
HpyCH4V TGCA 9 cut(s) 276, 598, 623, 662, 686, 734, 755, 917, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 595, 650, 659, 683, 692, 779, 848
HpyF3I CTNAG 5 cut(s) 54, 62, 195, 428, 522
HpySE526I ACGT 3 cut(s) 105, 321, 742
Hsp92II CATG 3 cut(s) 33, 175, 226
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 166, 313
LmnI GCTCC 3 cut(s) 674, 787, 793
Lsp1109I GCAGC 4 cut(s) 653, 782, 835, 901
LweI GCATC 1 cut(s) 731
MaeII ACGT 3 cut(s) 105, 321, 742
MaeIII GTNAC 3 cut(s) 259, 466, 527
MalI GATC 2 cut(s) 168, 315
MboI GATC 2 cut(s) 166, 313
MboII GAAGA 4 cut(s) 192, 195, 201, 936
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 679, 904
MlsI TGGCCA 1 cut(s) 547
MluCI AATT 4 cut(s) 36, 73, 185, 417
MluNI TGGCCA 1 cut(s) 547
MmeI TCCRAC 1 cut(s) 215
Mox20I TGGCCA 1 cut(s) 547
Mph1103I ATGCAT 1 cut(s) 600
MscI TGGCCA 1 cut(s) 547
Msp20I TGGCCA 1 cut(s) 547
MspA1I CMGCKG 2 cut(s) 848, 914
MspR9I CCNGG 1 cut(s) 873
MvaI CCWGG 1 cut(s) 873
MvnI CGCG 2 cut(s) 120, 307
MwoI GCNNNNNNNGC 7 cut(s) 595, 650, 659, 683, 692, 779, 848
NdeI CATATG 3 cut(s) 472, 699, 1027
NdeII GATC 2 cut(s) 166, 313
NlaIII CATG 3 cut(s) 33, 175, 226
NlaIV GGNNCC 2 cut(s) 48, 901
NmuCI GTSAC 2 cut(s) 259, 466
NsbI TGCGCA 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 691
PciI ACATGT 1 cut(s) 171
PfeI GAWTC 3 cut(s) 58, 123, 409
Pfl23II CGTACG 1 cut(s) 894
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 6 cut(s) 309, 588, 643, 772, 850, 916
Ppu21I YACGTR 1 cut(s) 106
PscI ACATGT 1 cut(s) 171
PsiI TTATAA 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 871
PspFI CCCAGC 1 cut(s) 778
PspGI CCWGG 1 cut(s) 871
PspLI CGTACG 1 cut(s) 894
PspN4I GGNNCC 2 cut(s) 48, 901
PspPI GGNCC 1 cut(s) 1022
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 848, 914
RsaI GTAC 5 cut(s) 152, 501, 541, 704, 896
RsaNI GTAC 5 cut(s) 151, 500, 540, 703, 895
SalI GTCGAC 1 cut(s) 226
SatI GCNGC 6 cut(s) 308, 587, 642, 771, 849, 915
Sau3AI GATC 2 cut(s) 166, 313
Sau96I GGNCC 1 cut(s) 1022
ScrFI CCNGG 1 cut(s) 873
SduI GDGCHC 2 cut(s) 679, 904
SfaNI GCATC 1 cut(s) 731
SinI GGWCC 1 cut(s) 1022
SmlI CTYRAG 2 cut(s) 254, 1017
SmoI CTYRAG 2 cut(s) 254, 1017
SnaBI TACGTA 1 cut(s) 106
Sse9I AATT 4 cut(s) 36, 73, 185, 417
SsiI CCGC 5 cut(s) 120, 307, 586, 689, 867
StyD4I CCNGG 1 cut(s) 871
TaaI ACNGT 4 cut(s) 143, 265, 464, 899
TaiI ACGT 3 cut(s) 108, 324, 745
TaqI TCGA 3 cut(s) 126, 227, 605
TasI AATT 4 cut(s) 36, 73, 185, 417
TatI WGTACW 2 cut(s) 499, 702
TauI GCSGC 2 cut(s) 310, 589
TfiI GAWTC 3 cut(s) 58, 123, 409
TscAI CASTG 2 cut(s) 268, 469
TseFI GTSAC 2 cut(s) 259, 466
TseI GCWGC 4 cut(s) 641, 770, 848, 914
Tsp45I GTSAC 2 cut(s) 259, 466
TspDTI ATGAA 3 cut(s) 18, 452, 813
TspGWI ACGGA 2 cut(s) 177, 387
TspRI CASTG 2 cut(s) 268, 469
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 1022
XagI CCTNNNNNAGG 1 cut(s) 509
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 108, 227
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.