AT4G34370

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
16434280 .. 16437415
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34370.2

Sequence Viewer

Length: 1794 bp
ATGGATGATTATTTTAGCGCGGAGGAAGAGGCTTGCTATTACTCCTCCGATCAAGATTCTTTGGATGGAATTGATAATGAAGAGTCTGAATTGCAGCCTCTGTCCTCTAAAAGATCAAACACTCAGGTCATCACTCAGGAATCGCTTCTAGCAGCACAGAGAGAAGATTTGCTAAGGGTGATGGAATTGTTATCAATAAAGGAGCACCATGCACGGACTCTTCTTATTCATTACCAGTGGGATGTGGAGAAGTTGTTTGCTGTGTTTGTTGAGAAAGGAAAAGATAGCTTGTTTTCTGGAGCTGGTGTCACTGTCTTCGATTATCAATATGGCAACTCTTCCTTTCCTCAGTCTTCACAGATGAGTTGTGATGTTTGCATGGAGGATTTACCAGGTGATCACATGACAAGAATGGACTGTGGCCATTGCTTTTGCAATAATTGTTGGACGGAGCATTTTACTGTGCAGATAAATGAAGGTCAGAGCAAAAGGATTAGATGCATGGCTCATCAATGTAATGCTATTTGTGATGAAGATATTGTCAGGAGTCTAGTCAGTAAAAAGCGTCCAGATCTAGCTGCGAAGTTTGATCGTTACCTTCTTGAGTCGTACATCGAAGATAACAGAATGGTCAAGTGGTGTCCTAGCACTCCGCATTGTGGGAATGCTATACGAGCTGAGGATGACAAGTTGTGCGAAGTTGAATGTTCTTGTGGTCTTCAGTTCTGTTTCAGTTGTCTGTGTCAAGCCCACTCCCCTTGCTCTTGTTTGATGTGGGAGTTATGGAGAAAGAAGTGTCGAGATGAGTCTGAGACAATCAACTGGATAACCGTTCACACAAAGCTGTGTCCCAAATGTTACAAACCTGTGGAAAAGAATGGTGGATGCAATCTCGTGAGGTGTATTTGTGGGCAGTGTTTTTGTTGGCTATGTGGTGGAGCTACTGGAAGTGATCACACTTATAGGAGTATCGCTGGTCACAGTTGTGGTCGGTACCAAGATGACAAAGAGAAGCAGATGGAAAGAGCGAAGAGAGATTTAAACAGGTATACGCATTATCATCACCGATACAAAGCTCATACAGATTCATCAAAGCTAGAAGATAAACTTAGGGATACTATCCATGAGAAAGTGTCGAAATCAGAAAAGAGGGAGTTGAAGCTTAAAGACTTCAGCTGGGTCACCAATGGACTCGACCGGTTATTCAGATCAAGGCGAGTTCTTTCATATTCGTATGCTTTTGCATATTATATGTTTGGTGAAGAGATGTTTAAAGATGAGATGACCCCTGAGGAGAGAGAGATAAAGAAGAATTTGTTTGAGGATCAGCAGCAACAACTTGAAAGTAATGTGGAGAAACTTTCGCAGTTCCTTGAGGAGCCCTTTGATGAATTTAGTAATGATAAAGTTATGGCGATAAGGATTCAAATCATCAATTTGTCTGTCGCCGTCGATACACTCTGCAAGAAAATGTACGAGTGCATTGAGAATGACTTACTCGGATCTCTCCAACTTGGCATCCACAACATCTCACCTTACAGATCGAAGGGAATCGAACAAGCAGCTCAGTTTTATGCTTCCTGGAATTCCAAAGATGCTGACAAATTCCAACCTTTGGATAGTGGTACAAGCGGAGTGACATCGAGGCCTGAGCAAGCTTCAGGATCAAGGAGCTCGGAAGACACCATTTGCTCATCTTCACAGAAACGTCCCAAAAAAGAAGGAAGTTTCTTAAACAACAAAGTCACTTTATTGGATTTGAACTTGCCAGCTGATTTCGTCGACCAGAACTGA

Protein Analysis

597

Amino Acids

68.79

Weight (kDa)

5.55

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 28 - 89 1.1e-12 IBR domain, a half RING-finger domain
Ariadne PF19422 181 - 430 4.3e-122 Ariadne domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 993
AccB1I GGYRCC 1 cut(s) 993
AccB7I CCANNNNNTGG 1 cut(s) 1615
AccI GTMKAC 2 cut(s) 1049, 1782
AccII CGCG 1 cut(s) 20
AciI CCGC 3 cut(s) 20, 653, 1632
AclWI GGATC 3 cut(s) 1332, 1510, 1672
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 4 cut(s) 1312, 1391, 1585, 1604
AcuI CTGAAG 3 cut(s) 704, 1156, 1644
AfaI GTAC 4 cut(s) 611, 995, 1475, 1627
AfiI CCNNNNNNNGG 2 cut(s) 659, 1615
AgeI ACCGGT 1 cut(s) 1197
AgsI TTSAA 5 cut(s) 704, 1159, 1343, 1427, 1762
AjnI CCWGG 2 cut(s) 391, 1580
AleI CACNNNNGTG 1 cut(s) 984
Alw21I GWGCWC 2 cut(s) 207, 1676
Alw26I GTCTC 1 cut(s) 806
AlwI GGATC 3 cut(s) 1332, 1510, 1672
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 2 cut(s) 421, 1646
ApeKI GCWGC 5 cut(s) 94, 152, 578, 1330, 1562
ApoI RAATTY 4 cut(s) 1312, 1391, 1585, 1604
AsiGI ACCGGT 1 cut(s) 1197
Asp700I GAANNNNTTC 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 993
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 6 cut(s) 190, 407, 1055, 1174, 1271, 1524
AxyI CCTNAGG 1 cut(s) 1290
BalI TGGCCA 1 cut(s) 423
BanI GGYRCC 1 cut(s) 993
BanII GRGCYC 2 cut(s) 1383, 1676
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 4 cut(s) 307, 345, 710, 1686
Bbv12I GWGCWC 2 cut(s) 207, 1676
BbvCI CCTCAGC 1 cut(s) 678
BbvI GCAGC 5 cut(s) 106, 164, 565, 1342, 1574
BccI CCATC 3 cut(s) 59, 175, 1012
BceAI ACGGC 1 cut(s) 1433
BciT130I CCWGG 2 cut(s) 393, 1582
BciVI GTATCC 1 cut(s) 1108
BclI TGATCA 2 cut(s) 397, 952
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 5 cut(s) 149, 551, 575, 645, 1097
BfuI GTATCC 1 cut(s) 1108
BglII AGATCT 1 cut(s) 571
BisI GCNGC 5 cut(s) 95, 153, 579, 1331, 1563
BlsI GCNGC 5 cut(s) 96, 154, 580, 1332, 1564
Bme1390I CCNGG 2 cut(s) 393, 1582
BmiI GGNNCC 2 cut(s) 995, 1380
BmrFI CCNGG 2 cut(s) 393, 1582
BmsI GCATC 4 cut(s) 488, 875, 1527, 1585
BpiI GAAGAC 4 cut(s) 307, 345, 710, 1686
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 3 cut(s) 173, 678, 1650
BpuEI CTTGAG 2 cut(s) 623, 1394
BsaBI GATNNNNATC 1 cut(s) 1427
BsaWI WCCGGW 1 cut(s) 1197
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 291, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 1615
Bse118I RCCGGY 1 cut(s) 1197
Bse1I ACTGG 3 cut(s) 235, 827, 949
Bse21I CCTNAGG 1 cut(s) 1290
Bse3DI GCAATG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 1427
BseBI CCWGG 2 cut(s) 393, 1582
BseGI GGATG 6 cut(s) 10, 70, 247, 688, 890, 1518
BseJI GATNNNNATC 1 cut(s) 1427
BseLI CCNNNNNNNGG 2 cut(s) 659, 1615
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 8 cut(s) 137, 149, 362, 669, 801, 1281, 1580, 1641
BseNI ACTGG 3 cut(s) 235, 827, 949
BseRI GAGGAG 3 cut(s) 34, 1307, 1391
BseXI GCAGC 5 cut(s) 106, 164, 565, 1342, 1574
BseYI CCCAGC 1 cut(s) 1176
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 1198
BshFI GGCC 2 cut(s) 423, 1648
BshNI GGYRCC 1 cut(s) 993
BshTI ACCGGT 1 cut(s) 1197
BsiEI CGRYCG 1 cut(s) 1198
BsiHKAI GWGCWC 2 cut(s) 207, 1676
BsiSI CCGG 1 cut(s) 1198
BslFI GGGAC 2 cut(s) 834, 1695
BslI CCNNNNNNNGG 2 cut(s) 659, 1615
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 2 cut(s) 834, 1695
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 2 cut(s) 423, 1648
Bsp1286I GDGCHC 3 cut(s) 207, 1383, 1676
BspACI CCGC 3 cut(s) 20, 653, 1632
BspANI GGCC 2 cut(s) 423, 1648
BspCNI CTCAG 8 cut(s) 136, 148, 361, 670, 802, 1282, 1579, 1642
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 995, 1380
BspPI GGATC 3 cut(s) 1332, 1510, 1672
BspT107I GGYRCC 1 cut(s) 993
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 1197
BsrI ACTGG 3 cut(s) 235, 827, 949
BssAI RCCGGY 1 cut(s) 1197
BssNAI GTATAC 1 cut(s) 1050
BssSI CACGAG 1 cut(s) 893
Bst1107I GTATAC 1 cut(s) 1050
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 2 cut(s) 393, 1582
Bst4CI ACNGT 5 cut(s) 313, 419, 463, 832, 983
Bst6I CTCTTC 6 cut(s) 21, 75, 225, 343, 1025, 1257
BstC8I GCNNGC 3 cut(s) 34, 1656, 1770
BstEII GGTNACC 1 cut(s) 1180
BstF5I GGATG 6 cut(s) 10, 70, 247, 688, 890, 1518
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 806
BstMCI CGRYCG 1 cut(s) 1198
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 2 cut(s) 393, 1582
BstPI GGTNACC 1 cut(s) 1180
BstSCI CCNGG 2 cut(s) 391, 1580
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 5 cut(s) 106, 164, 565, 1342, 1574
BstV2I GAAGAC 4 cut(s) 307, 345, 710, 1686
BstX2I RGATCY 2 cut(s) 571, 1502
BstYI RGATCY 2 cut(s) 571, 1502
BstZ17I GTATAC 1 cut(s) 1050
Bsu36I CCTNAGG 1 cut(s) 1290
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 2 cut(s) 423, 1648
BtsCI GGATG 6 cut(s) 10, 70, 247, 688, 890, 1518
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 3 cut(s) 242, 309, 920
Cac8I GCNNGC 3 cut(s) 34, 1656, 1770
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 1197
CseI GACGC 1 cut(s) 554
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 4 cut(s) 610, 994, 1474, 1626
CspAI ACCGGT 1 cut(s) 1197
CspCI CAANNNNNGTGG 2 cut(s) 740, 775
CviAII CATG 5 cut(s) 209, 379, 403, 502, 1124
CviQI GTAC 4 cut(s) 610, 994, 1474, 1626
DraI TTTAAA 2 cut(s) 1041, 1273
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 6 cut(s) 21, 75, 225, 343, 1025, 1257
EarI CTCTTC 6 cut(s) 21, 75, 225, 343, 1025, 1257
Ecl136II GAGCTC 1 cut(s) 1674
Eco147I AGGCCT 1 cut(s) 1648
Eco24I GRGCYC 2 cut(s) 1383, 1676
Eco53kI GAGCTC 1 cut(s) 1674
Eco57I CTGAAG 3 cut(s) 704, 1156, 1644
Eco81I CCTNAGG 1 cut(s) 1290
Eco91I GGTNACC 1 cut(s) 1180
EcoICRI GAGCTC 1 cut(s) 1674
EcoO65I GGTNACC 1 cut(s) 1180
EcoRI GAATTC 1 cut(s) 1585
EcoRII CCWGG 2 cut(s) 391, 1580
EcoT22I ATGCAT 1 cut(s) 503
EcoT38I GRGCYC 2 cut(s) 1383, 1676
FaeI CATG 5 cut(s) 212, 382, 406, 505, 1127
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 2 cut(s) 834, 1695
FatI CATG 5 cut(s) 208, 378, 402, 501, 1123
FbaI TGATCA 2 cut(s) 397, 952
FblI GTMKAC 2 cut(s) 1049, 1782
Fnu4HI GCNGC 5 cut(s) 95, 153, 579, 1331, 1563
FokI GGATG 6 cut(s) 17, 77, 254, 695, 897, 1505
FriOI GRGCYC 2 cut(s) 1383, 1676
Fsp4HI GCNGC 5 cut(s) 95, 153, 579, 1331, 1563
FspBI CTAG 5 cut(s) 149, 551, 575, 645, 1097
GlaI GCGC 1 cut(s) 19
GluI GCNGC 5 cut(s) 95, 153, 579, 1331, 1563
GsaI CCCAGC 1 cut(s) 1180
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 423, 1648
HapII CCGG 1 cut(s) 1198
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 20
Hin1II CATG 5 cut(s) 212, 382, 406, 505, 1127
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 1783
HindII GTYRAC 1 cut(s) 1783
HindIII AAGCTT 2 cut(s) 1160, 1656
HpaII CCGG 1 cut(s) 1198
HphI GGTGA 6 cut(s) 190, 407, 1055, 1174, 1271, 1524
Hpy166II GTNNAC 3 cut(s) 835, 1050, 1783
Hpy188I TCNGA 8 cut(s) 49, 88, 483, 811, 1144, 1208, 1502, 1678
Hpy188III TCNNGA 9 cut(s) 53, 137, 297, 544, 569, 602, 800, 895, 1662
Hpy8I GTNNAC 3 cut(s) 835, 1050, 1783
Hpy99I CGWCG 2 cut(s) 1454, 1784
HpyAV CCTTC 4 cut(s) 470, 608, 1540, 1715
HpyCH4III ACNGT 5 cut(s) 313, 419, 463, 832, 983
HpyCH4IV ACGT 1 cut(s) 1708
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 1708
Hsp92II CATG 5 cut(s) 212, 382, 406, 505, 1127
HspAI GCGC 1 cut(s) 18
KpnI GGTACC 1 cut(s) 997
Ksp22I TGATCA 2 cut(s) 397, 952
LmnI GCTCC 6 cut(s) 202, 299, 451, 938, 1378, 1671
Lsp1109I GCAGC 5 cut(s) 106, 164, 565, 1342, 1574
LweI GCATC 4 cut(s) 488, 875, 1527, 1585
MabI ACCWGGT 1 cut(s) 391
MaeI CTAG 5 cut(s) 149, 551, 575, 645, 1097
MaeII ACGT 1 cut(s) 1708
MaeIII GTNAC 7 cut(s) 307, 593, 857, 977, 1180, 1636, 1744
MflI RGATCY 2 cut(s) 571, 1502
MhlI GDGCHC 3 cut(s) 207, 1383, 1676
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 9 cut(s) 69, 89, 185, 439, 1312, 1391, 1435, 1585, 1604
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 6 cut(s) 92, 211, 556, 614, 815, 1185
MmeI TCCRAC 3 cut(s) 425, 1534, 1633
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 423
MseI TTAA 4 cut(s) 1040, 1164, 1272, 1733
MslI CAYNNNNRTG 1 cut(s) 984
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 2 cut(s) 1176, 1772
MspI CCGG 1 cut(s) 1198
MspR9I CCNGG 2 cut(s) 393, 1582
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 2 cut(s) 393, 1582
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 674
NlaIII CATG 5 cut(s) 212, 382, 406, 505, 1127
NlaIV GGNNCC 2 cut(s) 995, 1380
NmuCI GTSAC 5 cut(s) 307, 977, 1180, 1636, 1744
NsiI ATGCAT 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 984
PceI AGGCCT 1 cut(s) 1648
PctI GAATGC 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 5 cut(s) 56, 140, 1085, 1423, 1551
PflMI CCANNNNNTGG 1 cut(s) 1615
PfoI TCCNGGA 1 cut(s) 1580
PinAI ACCGGT 1 cut(s) 1197
PkrI GCNGC 5 cut(s) 96, 154, 580, 1332, 1564
PleI GAGTC 6 cut(s) 91, 211, 555, 613, 814, 1185
PpsI GAGTC 6 cut(s) 91, 211, 555, 613, 814, 1185
Psp124BI GAGCTC 1 cut(s) 1676
Psp6I CCWGG 2 cut(s) 391, 1580
PspEI GGTNACC 1 cut(s) 1180
PspFI CCCAGC 1 cut(s) 1176
PspGI CCWGG 2 cut(s) 391, 1580
PspN4I GGNNCC 2 cut(s) 995, 1380
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 571, 1502
PvuII CAGCTG 2 cut(s) 1176, 1772
RsaI GTAC 4 cut(s) 611, 995, 1475, 1627
RsaNI GTAC 4 cut(s) 610, 994, 1474, 1626
RseI CAYNNNNRTG 1 cut(s) 984
SacI GAGCTC 1 cut(s) 1676
SalI GTCGAC 1 cut(s) 1781
SaqAI TTAA 4 cut(s) 1040, 1164, 1272, 1733
SatI GCNGC 5 cut(s) 95, 153, 579, 1331, 1563
SchI GAGTC 6 cut(s) 92, 211, 556, 614, 815, 1185
ScrFI CCNGG 2 cut(s) 393, 1582
SduI GDGCHC 3 cut(s) 207, 1383, 1676
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 4 cut(s) 488, 875, 1527, 1585
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 2 cut(s) 602, 1373
SmoI CTYRAG 2 cut(s) 602, 1373
Sse9I AATT 9 cut(s) 69, 89, 185, 439, 1312, 1391, 1435, 1585, 1604
SseBI AGGCCT 1 cut(s) 1648
SsiI CCGC 3 cut(s) 20, 653, 1632
SspMI CTAG 5 cut(s) 149, 551, 575, 645, 1097
SstI GAGCTC 1 cut(s) 1676
StuI AGGCCT 1 cut(s) 1648
StyD4I CCNGG 2 cut(s) 391, 1580
TaaI ACNGT 5 cut(s) 313, 419, 463, 832, 983
TaiI ACGT 1 cut(s) 1711
TasI AATT 9 cut(s) 69, 89, 185, 439, 1312, 1391, 1435, 1585, 1604
TfiI GAWTC 5 cut(s) 56, 140, 1085, 1423, 1551
Tru1I TTAA 4 cut(s) 1040, 1164, 1272, 1733
Tru9I TTAA 4 cut(s) 1040, 1164, 1272, 1733
TscAI CASTG 3 cut(s) 242, 316, 920
TseFI GTSAC 5 cut(s) 307, 977, 1180, 1636, 1744
TseI GCWGC 5 cut(s) 94, 152, 578, 1330, 1562
Tsp45I GTSAC 5 cut(s) 307, 977, 1180, 1636, 1744
TspDTI ATGAA 7 cut(s) 93, 218, 489, 546, 1077, 1215, 1404
TspGWI ACGGA 2 cut(s) 229, 464
TspRI CASTG 3 cut(s) 242, 316, 920
Van91I CCANNNNNTGG 1 cut(s) 1615
XapI RAATTY 4 cut(s) 1312, 1391, 1585, 1604
XmiI GTMKAC 2 cut(s) 1049, 1782
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 5 cut(s) 149, 551, 575, 645, 1097
Zsp2I ATGCAT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.