E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 299 |
| Acc16I | TGCGCA | 2 cut(s) | 162, 1468 |
| Acc36I | ACCTGC | 1 cut(s) | 299 |
| AccB1I | GGYRCC | 2 cut(s) | 642, 938 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 860 |
| AccI | GTMKAC | 1 cut(s) | 1123 |
| AccII | CGCG | 1 cut(s) | 977 |
| AciI | CCGC | 8 cut(s) | 266, 372, 423, 663, 912, 936, 977, 1623 |
| AclWI | GGATC | 5 cut(s) | 563, 576, 987, 1047, 1439 |
| AcoI | YGGCCR | 2 cut(s) | 579, 1620 |
| AcsI | RAATTY | 3 cut(s) | 67, 390, 587 |
| AcuI | CTGAAG | 1 cut(s) | 1551 |
| AcyI | GRCGYC | 1 cut(s) | 969 |
| AfaI | GTAC | 2 cut(s) | 1052, 1478 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 662, 860, 1515 |
| AflII | CTTAAG | 1 cut(s) | 1094 |
| AflIII | ACRYGT | 1 cut(s) | 1254 |
| AjiI | CACGTC | 1 cut(s) | 175 |
| AleI | CACNNNNGTG | 1 cut(s) | 987 |
| AluBI | AGCT | 7 cut(s) | 398, 868, 1079, 1099, 1179, 1342, 1565 |
| AluI | AGCT | 7 cut(s) | 398, 868, 1079, 1099, 1179, 1342, 1565 |
| Alw26I | GTCTC | 3 cut(s) | 809, 911, 1007 |
| AlwI | GGATC | 5 cut(s) | 563, 576, 987, 1047, 1439 |
| AoxI | GGCC | 3 cut(s) | 579, 1029, 1620 |
| ApeKI | GCWGC | 4 cut(s) | 158, 1333, 1336, 1339 |
| ApoI | RAATTY | 3 cut(s) | 67, 390, 587 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 906, 938 |
| AspLEI | GCGC | 3 cut(s) | 163, 495, 1469 |
| AspS9I | GGNCC | 2 cut(s) | 1302, 1327 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 646 |
| AvaII | GGWCC | 2 cut(s) | 1302, 1327 |
| AxyI | CCTNAGG | 1 cut(s) | 114 |
| BaeGI | GKGCMC | 2 cut(s) | 647, 943 |
| BamHI | GGATCC | 1 cut(s) | 568 |
| BanI | GGYRCC | 2 cut(s) | 642, 938 |
| BbsI | GAAGAC | 2 cut(s) | 1011, 1272 |
| BbvI | GCAGC | 4 cut(s) | 145, 1345, 1348, 1351 |
| BccI | CCATC | 1 cut(s) | 980 |
| BceAI | ACGGC | 1 cut(s) | 1305 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcoDI | GTCTC | 3 cut(s) | 809, 911, 1007 |
| BfaI | CTAG | 4 cut(s) | 554, 896, 1584, 1639 |
| BfmI | CTRYAG | 1 cut(s) | 1198 |
| BfrI | CTTAAG | 1 cut(s) | 1094 |
| BfuAI | ACCTGC | 1 cut(s) | 299 |
| BglII | AGATCT | 1 cut(s) | 1438 |
| BisI | GCNGC | 5 cut(s) | 159, 1334, 1337, 1340, 1623 |
| BlpI | GCTNAGC | 1 cut(s) | 742 |
| BlsI | GCNGC | 5 cut(s) | 160, 1335, 1338, 1341, 1624 |
| Bme18I | GGWCC | 2 cut(s) | 1302, 1327 |
| BmgBI | CACGTC | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 2 cut(s) | 1302, 1327 |
| BmiI | GGNNCC | 6 cut(s) | 120, 570, 644, 940, 1383, 1507 |
| BmsI | GCATC | 2 cut(s) | 878, 1494 |
| BpiI | GAAGAC | 2 cut(s) | 1011, 1272 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 742 |
| BpuEI | CTTGAG | 2 cut(s) | 1364, 1496 |
| Bsa29I | ATCGAT | 1 cut(s) | 1086 |
| BsaBI | GATNNNNATC | 1 cut(s) | 573 |
| BsaHI | GRCGYC | 1 cut(s) | 969 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 662, 860, 1515 |
| Bse1I | ACTGG | 1 cut(s) | 952 |
| Bse21I | CCTNAGG | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 2 cut(s) | 192, 526 |
| Bse8I | GATNNNNATC | 1 cut(s) | 573 |
| BseCI | ATCGAT | 1 cut(s) | 1086 |
| BseJI | GATNNNNATC | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 662, 860, 1515 |
| BseMI | GCAATG | 2 cut(s) | 192, 526 |
| BseMII | CTCAG | 4 cut(s) | 105, 121, 351, 362 |
| BseNI | ACTGG | 1 cut(s) | 952 |
| BseRI | GAGGAG | 2 cut(s) | 1025, 1394 |
| BseSI | GKGCMC | 2 cut(s) | 647, 943 |
| BseXI | GCAGC | 4 cut(s) | 145, 1345, 1348, 1351 |
| BseYI | CCCAGC | 1 cut(s) | 1179 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 1 cut(s) | 977 |
| BshFI | GGCC | 3 cut(s) | 581, 1031, 1622 |
| BshNI | GGYRCC | 2 cut(s) | 642, 938 |
| BshVI | ATCGAT | 1 cut(s) | 1086 |
| BsiSI | CCGG | 1 cut(s) | 1403 |
| BslFI | GGGAC | 2 cut(s) | 980, 1601 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 662, 860, 1515 |
| BsmAI | GTCTC | 3 cut(s) | 809, 911, 1007 |
| BsmBI | CGTCTC | 2 cut(s) | 809, 1007 |
| BsmFI | GGGAC | 2 cut(s) | 980, 1601 |
| BsnI | GGCC | 3 cut(s) | 581, 1031, 1622 |
| Bsp1286I | GDGCHC | 2 cut(s) | 647, 943 |
| Bsp143I | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 742 |
| BspACI | CCGC | 8 cut(s) | 266, 372, 423, 663, 912, 936, 977, 1623 |
| BspANI | GGCC | 3 cut(s) | 581, 1031, 1622 |
| BspCNI | CTCAG | 4 cut(s) | 106, 120, 352, 361 |
| BspDI | ATCGAT | 1 cut(s) | 1086 |
| BspFNI | CGCG | 1 cut(s) | 977 |
| BspLI | GGNNCC | 6 cut(s) | 120, 570, 644, 940, 1383, 1507 |
| BspMI | ACCTGC | 1 cut(s) | 299 |
| BspPI | GGATC | 5 cut(s) | 563, 576, 987, 1047, 1439 |
| BspT107I | GGYRCC | 2 cut(s) | 642, 938 |
| BspTI | CTTAAG | 1 cut(s) | 1094 |
| BsrDI | GCAATG | 2 cut(s) | 192, 526 |
| BsrI | ACTGG | 1 cut(s) | 952 |
| BssMI | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| BssNAI | GTATAC | 1 cut(s) | 1124 |
| BssNI | GRCGYC | 1 cut(s) | 969 |
| Bst1107I | GTATAC | 1 cut(s) | 1124 |
| Bst4CI | ACNGT | 8 cut(s) | 89, 242, 412, 820, 986, 1070, 1529, 1579 |
| BstACI | GRCGYC | 1 cut(s) | 969 |
| BstAFI | CTTAAG | 1 cut(s) | 1094 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 2 cut(s) | 264, 866 |
| BstDEI | CTNAG | 6 cut(s) | 107, 114, 348, 360, 742, 1435 |
| BstFNI | CGCG | 1 cut(s) | 977 |
| BstHHI | GCGC | 3 cut(s) | 163, 495, 1469 |
| BstKTI | GATC | 9 cut(s) | 61, 337, 403, 571, 982, 1042, 1214, 1434, 1441 |
| BstMAI | GTCTC | 3 cut(s) | 809, 911, 1007 |
| BstMBI | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 268, 378, 429, 490, 501, 1190, 1339, 1631 |
| BstNSI | RCATGY | 2 cut(s) | 717, 1258 |
| BstSFI | CTRYAG | 1 cut(s) | 1198 |
| BstSLI | GKGCMC | 2 cut(s) | 647, 943 |
| BstUI | CGCG | 1 cut(s) | 977 |
| BstV1I | GCAGC | 4 cut(s) | 145, 1345, 1348, 1351 |
| BstV2I | GAAGAC | 2 cut(s) | 1011, 1272 |
| BstX2I | RGATCY | 4 cut(s) | 568, 1039, 1431, 1438 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 927 |
| BstYI | RGATCY | 4 cut(s) | 568, 1039, 1431, 1438 |
| BstZ17I | GTATAC | 1 cut(s) | 1124 |
| Bsu15I | ATCGAT | 1 cut(s) | 1086 |
| Bsu36I | CCTNAGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 3 cut(s) | 581, 1031, 1622 |
| BsuTUI | ATCGAT | 1 cut(s) | 1086 |
| BtgZI | GCGATG | 1 cut(s) | 958 |
| BtrI | CACGTC | 1 cut(s) | 175 |
| BtsI | GCAGTG | 2 cut(s) | 427, 658 |
| BtsIMutI | CAGTG | 3 cut(s) | 427, 565, 658 |
| BveI | ACCTGC | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 2 cut(s) | 264, 866 |
| CfoI | GCGC | 3 cut(s) | 163, 495, 1469 |
| Cfr13I | GGNCC | 2 cut(s) | 1302, 1327 |
| ClaI | ATCGAT | 1 cut(s) | 1086 |
| CseI | GACGC | 1 cut(s) | 977 |
| Csp6I | GTAC | 2 cut(s) | 1051, 1477 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1536, 1571 |
| CviQI | GTAC | 2 cut(s) | 1051, 1477 |
| DdeI | CTNAG | 6 cut(s) | 107, 114, 348, 360, 742, 1435 |
| DpnI | GATC | 9 cut(s) | 60, 336, 402, 570, 981, 1041, 1213, 1433, 1440 |
| DpnII | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| EaeI | YGGCCR | 2 cut(s) | 579, 1620 |
| Eco47I | GGWCC | 2 cut(s) | 1302, 1327 |
| Eco57I | CTGAAG | 1 cut(s) | 1551 |
| Eco81I | CCTNAGG | 1 cut(s) | 114 |
| EcoT22I | ATGCAT | 1 cut(s) | 506 |
| Esp3I | CGTCTC | 2 cut(s) | 809, 1007 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1301, 1333 |
| FaqI | GGGAC | 2 cut(s) | 980, 1601 |
| FauNDI | CATATG | 1 cut(s) | 1271 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| FblI | GTMKAC | 1 cut(s) | 1123 |
| Fnu4HI | GCNGC | 5 cut(s) | 159, 1334, 1337, 1340, 1623 |
| Fsp4HI | GCNGC | 5 cut(s) | 159, 1334, 1337, 1340, 1623 |
| FspBI | CTAG | 4 cut(s) | 554, 896, 1584, 1639 |
| FspI | TGCGCA | 2 cut(s) | 162, 1468 |
| GlaI | GCGC | 3 cut(s) | 162, 494, 1468 |
| GluI | GCNGC | 5 cut(s) | 159, 1334, 1337, 1340, 1623 |
| GsaI | CCCAGC | 1 cut(s) | 1183 |
| HaeIII | GGCC | 3 cut(s) | 581, 1031, 1622 |
| HapII | CCGG | 1 cut(s) | 1403 |
| HgaI | GACGC | 1 cut(s) | 977 |
| HhaI | GCGC | 3 cut(s) | 163, 495, 1469 |
| Hin1I | GRCGYC | 1 cut(s) | 969 |
| Hin6I | GCGC | 3 cut(s) | 161, 493, 1467 |
| HinP1I | GCGC | 3 cut(s) | 161, 493, 1467 |
| HincII | GTYRAC | 1 cut(s) | 253 |
| HindII | GTYRAC | 1 cut(s) | 253 |
| HindIII | AAGCTT | 2 cut(s) | 1097, 1563 |
| HinfI | GANTC | 9 cut(s) | 101, 146, 608, 809, 955, 996, 1088, 1157, 1203 |
| HpaII | CCGG | 1 cut(s) | 1403 |
| HphI | GGTGA | 2 cut(s) | 101, 646 |
| Hpy166II | GTNNAC | 4 cut(s) | 7, 253, 1053, 1124 |
| Hpy188I | TCNGA | 7 cut(s) | 123, 361, 548, 795, 814, 1570, 1609 |
| Hpy188III | TCNNGA | 2 cut(s) | 605, 1513 |
| Hpy8I | GTNNAC | 4 cut(s) | 7, 253, 1053, 1124 |
| Hpy99I | CGWCG | 6 cut(s) | 32, 35, 50, 53, 127, 176 |
| HpyAV | CCTTC | 2 cut(s) | 160, 274 |
| HpyCH4III | ACNGT | 8 cut(s) | 89, 242, 412, 820, 986, 1070, 1529, 1579 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 174 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 268, 378, 429, 490, 501, 1190, 1339, 1631 |
| HpyF3I | CTNAG | 6 cut(s) | 107, 114, 348, 360, 742, 1435 |
| HpySE526I | ACGT | 2 cut(s) | 18, 174 |
| Hsp92I | GRCGYC | 1 cut(s) | 969 |
| HspAI | GCGC | 3 cut(s) | 161, 493, 1467 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| LmnI | GCTCC | 4 cut(s) | 325, 454, 1381, 1540 |
| Lsp1109I | GCAGC | 4 cut(s) | 145, 1345, 1348, 1351 |
| LweI | GCATC | 2 cut(s) | 878, 1494 |
| MaeI | CTAG | 4 cut(s) | 554, 896, 1584, 1639 |
| MaeII | ACGT | 2 cut(s) | 18, 174 |
| MaeIII | GTNAC | 2 cut(s) | 406, 425 |
| MalI | GATC | 9 cut(s) | 60, 336, 402, 570, 981, 1041, 1213, 1433, 1440 |
| MboI | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| MboII | GAAGA | 7 cut(s) | 593, 698, 889, 1016, 1160, 1277, 1307 |
| MflI | RGATCY | 4 cut(s) | 568, 1039, 1431, 1438 |
| MhlI | GDGCHC | 2 cut(s) | 647, 943 |
| MluCI | AATT | 9 cut(s) | 67, 94, 390, 587, 725, 823, 1410, 1472, 1611 |
| MlyI | GAGTC | 2 cut(s) | 95, 1197 |
| MmeI | TCCRAC | 3 cut(s) | 60, 146, 428 |
| Mph1103I | ATGCAT | 1 cut(s) | 506 |
| MseI | TTAA | 4 cut(s) | 498, 735, 822, 1095 |
| MslI | CAYNNNNRTG | 3 cut(s) | 514, 766, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 398 |
| MspCI | CTTAAG | 1 cut(s) | 1094 |
| MspI | CCGG | 1 cut(s) | 1403 |
| MvnI | CGCG | 1 cut(s) | 977 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 268, 378, 429, 490, 501, 1190, 1339, 1631 |
| NdeI | CATATG | 1 cut(s) | 1271 |
| NdeII | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| NlaIV | GGNNCC | 6 cut(s) | 120, 570, 644, 940, 1383, 1507 |
| NmeAIII | GCCGAG | 1 cut(s) | 607 |
| NmuCI | GTSAC | 2 cut(s) | 406, 425 |
| NsbI | TGCGCA | 2 cut(s) | 162, 1468 |
| NsiI | ATGCAT | 1 cut(s) | 506 |
| NspI | RCATGY | 2 cut(s) | 717, 1258 |
| OliI | CACNNNNGTG | 1 cut(s) | 987 |
| PaqCI | CACCTGC | 1 cut(s) | 299 |
| PciI | ACATGT | 1 cut(s) | 1254 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 15, 24, 1485 |
| PfeI | GAWTC | 7 cut(s) | 146, 608, 809, 955, 996, 1088, 1157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 860 |
| PkrI | GCNGC | 5 cut(s) | 160, 1335, 1338, 1341, 1624 |
| PleI | GAGTC | 2 cut(s) | 95, 1197 |
| PpsI | GAGTC | 2 cut(s) | 95, 1197 |
| PscI | ACATGT | 1 cut(s) | 1254 |
| PspFI | CCCAGC | 1 cut(s) | 1179 |
| PspN4I | GGNNCC | 6 cut(s) | 120, 570, 644, 940, 1383, 1507 |
| PspPI | GGNCC | 2 cut(s) | 1302, 1327 |
| PsuI | RGATCY | 4 cut(s) | 568, 1039, 1431, 1438 |
| PvuII | CAGCTG | 1 cut(s) | 398 |
| RsaI | GTAC | 2 cut(s) | 1052, 1478 |
| RsaNI | GTAC | 2 cut(s) | 1051, 1477 |
| RseI | CAYNNNNRTG | 3 cut(s) | 514, 766, 987 |
| SaqAI | TTAA | 4 cut(s) | 498, 735, 822, 1095 |
| SatI | GCNGC | 5 cut(s) | 159, 1334, 1337, 1340, 1623 |
| Sau3AI | GATC | 9 cut(s) | 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438 |
| Sau96I | GGNCC | 2 cut(s) | 1302, 1327 |
| SchI | GAGTC | 2 cut(s) | 95, 1197 |
| SduI | GDGCHC | 2 cut(s) | 647, 943 |
| SfaNI | GCATC | 2 cut(s) | 878, 1494 |
| SfcI | CTRYAG | 1 cut(s) | 1198 |
| SinI | GGWCC | 2 cut(s) | 1302, 1327 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 514, 766, 987 |
| SmlI | CTYRAG | 3 cut(s) | 1094, 1343, 1511 |
| SmoI | CTYRAG | 3 cut(s) | 1094, 1343, 1511 |
| Sse9I | AATT | 9 cut(s) | 67, 94, 390, 587, 725, 823, 1410, 1472, 1611 |
| SsiI | CCGC | 8 cut(s) | 266, 372, 423, 663, 912, 936, 977, 1623 |
| SspI | AATATT | 1 cut(s) | 41 |
| SspMI | CTAG | 4 cut(s) | 554, 896, 1584, 1639 |
| TaaI | ACNGT | 8 cut(s) | 89, 242, 412, 820, 986, 1070, 1529, 1579 |
| TaiI | ACGT | 2 cut(s) | 21, 177 |
| TaqI | TCGA | 4 cut(s) | 403, 1086, 1160, 1488 |
| TasI | AATT | 9 cut(s) | 67, 94, 390, 587, 725, 823, 1410, 1472, 1611 |
| TauI | GCSGC | 1 cut(s) | 1625 |
| TfiI | GAWTC | 7 cut(s) | 146, 608, 809, 955, 996, 1088, 1157 |
| Tru1I | TTAA | 4 cut(s) | 498, 735, 822, 1095 |
| Tru9I | TTAA | 4 cut(s) | 498, 735, 822, 1095 |
| TscAI | CASTG | 3 cut(s) | 434, 565, 665 |
| TseFI | GTSAC | 2 cut(s) | 406, 425 |
| TseI | GCWGC | 4 cut(s) | 158, 1333, 1336, 1339 |
| Tsp45I | GTSAC | 2 cut(s) | 406, 425 |
| TspDTI | ATGAA | 8 cut(s) | 333, 402, 549, 705, 756, 822, 1296, 1422 |
| TspGWI | ACGGA | 2 cut(s) | 456, 467 |
| TspRI | CASTG | 3 cut(s) | 434, 565, 665 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 860 |
| Vha464I | CTTAAG | 1 cut(s) | 1094 |
| VpaK11BI | GGWCC | 2 cut(s) | 1302, 1327 |
| XapI | RAATTY | 3 cut(s) | 67, 390, 587 |
| XceI | RCATGY | 2 cut(s) | 717, 1258 |
| XmiI | GTMKAC | 1 cut(s) | 1123 |
| XspI | CTAG | 4 cut(s) | 554, 896, 1584, 1639 |
| Zsp2I | ATGCAT | 1 cut(s) | 506 |