pycom08g03000

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
2350514 .. 2353598
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03000.7

Sequence Viewer

Length: 1641 bp
ATGGTGGACGATTATTACGTCAGTAGCGACGACGAGGAATATTACGACGACGAGGATGATCGCCAGAATTTTGAGTTGTTGGAATACGGTGAGAATTACGACTCTCTCAGCCCTGAGGTTCCGACGAGTAAGGTCATTTCAAAAGAATCTCTCTTGGCTGCGCAGAAGGACGACGTGCAGAGGGCAATGGATGTGCTGTCATTGAAAGAATACCATGCCCGAACTTTACTCATCCATTACCGTTGGGATGTTGACAATGTGCTTGCGGTGCTTGTAGAGAAGGGGAAAGATAGATTGTATGCCGAAGCAGGTGTGATGTTGGTGGAGCAGGATGATCATGTTTCATCTCAGTTGTCCTCTGAGGTAATGTGCGGTATTTGCATGGATGAAATTCCAGCTGATCGAGTGACAGTCATGGATTGCGGTCACTGCTTCTGCAACGGATGTTGGACGGAGCATTTTATTGTGAAAATAAATGACGGGCAGAGTAGGCGCATTAAATGCATGGCATACAAGTGCAATGCCATTTGTGATGAAGCAGTAATCAGAAATCTAGTCAGTGCAAGGGATCCTAATCTGGCCGAGAAATTTGAGCGTTTTCTTCTGGAATCATATATTGAGGATAATAGAATGGTGAAATGGTGCCCAAGTGTTCCCCACTGCGGAAATGCTATACGCATTGAGGAAGATGAACTATGCGAGGTTGAATGTGCATGTGGGCTTCAATTCTGTTTTAACTGCTTAGCCGAAGCACACTCCCCATGTTCATGCCAAATGTGGAAACTATGGTGTCAGAAGTGCCAAGATGAATCAGAGACGGTTAATTATATTGCAGTCAATACAAAGCCTTGCCCAAAGTGTGGCAAGCTGGTTGAGAAGAATGGAGGATGCAATCTAGTTTCGTGTCTCTGCGGACAACCATTTTGTTGGCTCTGCGGTGCCCCAACTGGTTTGAATCATACATGGGACGCCATCGCGGATCACAGTTGTGGGCGATTCAAAGAAGACGAGGAGACGAAACTTGAACAGGCCAAGAGGGATCTATTTCGGTACACTCACTACTTCAACCGTTATCAAGCTCATATCGATTCTCTTAAGCTTGAAGCAACGCTGAAACAAAGTATACAAGAAAAAATATCGCATTTGGAAGAAAGAGAATCGACATATAGAGATATGAGCTGGGCGACCAATGCACTCTACAGACTCTTTAGATCAAGGCAGATTATTTCGTATTCCTACCCGTTTGCATATTACATGTTTAGCGAAGACATATGCAAAAATGAAATGACGGCAGAAGAAAGGACCATAAAGCAAAACTTATTTGAGGACCAGCAGCAGCAGCTTGAGGCAAATATGGAGAGGCTTTCTTTGTTTATAGAGGAGCCTTTTGATGAGTATTCGCCGGATGAAATTATGGAGTTGAAAATGGGGATCTTAGATCTTTCTACGCTTACTGATAACCTCTGCGCAAAATTGTACGATTGCATCGAGGATGATTTGTTGGGTTCCCTCAAGAGGACAAGGCACAGTATTGCTCCTTACAAGTCAAATGGTGTGGAGAAAGCTTCAGAACTTACGGTTTCTAGGGACACCACAACCTCTAACTCCGAAATTGATTTGGCCGCCTCCAACGCTGACTAG

Protein Analysis

547

Amino Acids

62.83

Weight (kDa)

4.68

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc16I TGCGCA 2 cut(s) 162, 1468
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 2 cut(s) 642, 938
AccB7I CCANNNNNTGG 1 cut(s) 860
AccI GTMKAC 1 cut(s) 1123
AccII CGCG 1 cut(s) 977
AciI CCGC 8 cut(s) 266, 372, 423, 663, 912, 936, 977, 1623
AclWI GGATC 5 cut(s) 563, 576, 987, 1047, 1439
AcoI YGGCCR 2 cut(s) 579, 1620
AcsI RAATTY 3 cut(s) 67, 390, 587
AcuI CTGAAG 1 cut(s) 1551
AcyI GRCGYC 1 cut(s) 969
AfaI GTAC 2 cut(s) 1052, 1478
AfiI CCNNNNNNNGG 3 cut(s) 662, 860, 1515
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 1 cut(s) 1254
AjiI CACGTC 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 987
AluBI AGCT 7 cut(s) 398, 868, 1079, 1099, 1179, 1342, 1565
AluI AGCT 7 cut(s) 398, 868, 1079, 1099, 1179, 1342, 1565
Alw26I GTCTC 3 cut(s) 809, 911, 1007
AlwI GGATC 5 cut(s) 563, 576, 987, 1047, 1439
AoxI GGCC 3 cut(s) 579, 1029, 1620
ApeKI GCWGC 4 cut(s) 158, 1333, 1336, 1339
ApoI RAATTY 3 cut(s) 67, 390, 587
ArsI GACNNNNNNTTYG 2 cut(s) 906, 938
AspLEI GCGC 3 cut(s) 163, 495, 1469
AspS9I GGNCC 2 cut(s) 1302, 1327
AsuHPI GGTGA 2 cut(s) 101, 646
AvaII GGWCC 2 cut(s) 1302, 1327
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 2 cut(s) 647, 943
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 2 cut(s) 642, 938
BbsI GAAGAC 2 cut(s) 1011, 1272
BbvI GCAGC 4 cut(s) 145, 1345, 1348, 1351
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 1305
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 809, 911, 1007
BfaI CTAG 4 cut(s) 554, 896, 1584, 1639
BfmI CTRYAG 1 cut(s) 1198
BfrI CTTAAG 1 cut(s) 1094
BfuAI ACCTGC 1 cut(s) 299
BglII AGATCT 1 cut(s) 1438
BisI GCNGC 5 cut(s) 159, 1334, 1337, 1340, 1623
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 5 cut(s) 160, 1335, 1338, 1341, 1624
Bme18I GGWCC 2 cut(s) 1302, 1327
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 1302, 1327
BmiI GGNNCC 6 cut(s) 120, 570, 644, 940, 1383, 1507
BmsI GCATC 2 cut(s) 878, 1494
BpiI GAAGAC 2 cut(s) 1011, 1272
Bpu1102I GCTNAGC 1 cut(s) 742
BpuEI CTTGAG 2 cut(s) 1364, 1496
Bsa29I ATCGAT 1 cut(s) 1086
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 969
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 860, 1515
Bse1I ACTGG 1 cut(s) 952
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 192, 526
Bse8I GATNNNNATC 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 1086
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 662, 860, 1515
BseMI GCAATG 2 cut(s) 192, 526
BseMII CTCAG 4 cut(s) 105, 121, 351, 362
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 2 cut(s) 1025, 1394
BseSI GKGCMC 2 cut(s) 647, 943
BseXI GCAGC 4 cut(s) 145, 1345, 1348, 1351
BseYI CCCAGC 1 cut(s) 1179
BsgI GTGCAG 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 3 cut(s) 581, 1031, 1622
BshNI GGYRCC 2 cut(s) 642, 938
BshVI ATCGAT 1 cut(s) 1086
BsiSI CCGG 1 cut(s) 1403
BslFI GGGAC 2 cut(s) 980, 1601
BslI CCNNNNNNNGG 3 cut(s) 662, 860, 1515
BsmAI GTCTC 3 cut(s) 809, 911, 1007
BsmBI CGTCTC 2 cut(s) 809, 1007
BsmFI GGGAC 2 cut(s) 980, 1601
BsnI GGCC 3 cut(s) 581, 1031, 1622
Bsp1286I GDGCHC 2 cut(s) 647, 943
Bsp143I GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
Bsp1720I GCTNAGC 1 cut(s) 742
BspACI CCGC 8 cut(s) 266, 372, 423, 663, 912, 936, 977, 1623
BspANI GGCC 3 cut(s) 581, 1031, 1622
BspCNI CTCAG 4 cut(s) 106, 120, 352, 361
BspDI ATCGAT 1 cut(s) 1086
BspFNI CGCG 1 cut(s) 977
BspLI GGNNCC 6 cut(s) 120, 570, 644, 940, 1383, 1507
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 5 cut(s) 563, 576, 987, 1047, 1439
BspT107I GGYRCC 2 cut(s) 642, 938
BspTI CTTAAG 1 cut(s) 1094
BsrDI GCAATG 2 cut(s) 192, 526
BsrI ACTGG 1 cut(s) 952
BssMI GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
BssNAI GTATAC 1 cut(s) 1124
BssNI GRCGYC 1 cut(s) 969
Bst1107I GTATAC 1 cut(s) 1124
Bst4CI ACNGT 8 cut(s) 89, 242, 412, 820, 986, 1070, 1529, 1579
BstACI GRCGYC 1 cut(s) 969
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 264, 866
BstDEI CTNAG 6 cut(s) 107, 114, 348, 360, 742, 1435
BstFNI CGCG 1 cut(s) 977
BstHHI GCGC 3 cut(s) 163, 495, 1469
BstKTI GATC 9 cut(s) 61, 337, 403, 571, 982, 1042, 1214, 1434, 1441
BstMAI GTCTC 3 cut(s) 809, 911, 1007
BstMBI GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
BstMWI GCNNNNNNNGC 8 cut(s) 268, 378, 429, 490, 501, 1190, 1339, 1631
BstNSI RCATGY 2 cut(s) 717, 1258
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 2 cut(s) 647, 943
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 4 cut(s) 145, 1345, 1348, 1351
BstV2I GAAGAC 2 cut(s) 1011, 1272
BstX2I RGATCY 4 cut(s) 568, 1039, 1431, 1438
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 4 cut(s) 568, 1039, 1431, 1438
BstZ17I GTATAC 1 cut(s) 1124
Bsu15I ATCGAT 1 cut(s) 1086
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 581, 1031, 1622
BsuTUI ATCGAT 1 cut(s) 1086
BtgZI GCGATG 1 cut(s) 958
BtrI CACGTC 1 cut(s) 175
BtsI GCAGTG 2 cut(s) 427, 658
BtsIMutI CAGTG 3 cut(s) 427, 565, 658
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 264, 866
CfoI GCGC 3 cut(s) 163, 495, 1469
Cfr13I GGNCC 2 cut(s) 1302, 1327
ClaI ATCGAT 1 cut(s) 1086
CseI GACGC 1 cut(s) 977
Csp6I GTAC 2 cut(s) 1051, 1477
CspCI CAANNNNNGTGG 2 cut(s) 1536, 1571
CviQI GTAC 2 cut(s) 1051, 1477
DdeI CTNAG 6 cut(s) 107, 114, 348, 360, 742, 1435
DpnI GATC 9 cut(s) 60, 336, 402, 570, 981, 1041, 1213, 1433, 1440
DpnII GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
EaeI YGGCCR 2 cut(s) 579, 1620
Eco47I GGWCC 2 cut(s) 1302, 1327
Eco57I CTGAAG 1 cut(s) 1551
Eco81I CCTNAGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 506
Esp3I CGTCTC 2 cut(s) 809, 1007
FalI AAGNNNNNCTT 2 cut(s) 1301, 1333
FaqI GGGAC 2 cut(s) 980, 1601
FauNDI CATATG 1 cut(s) 1271
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 1123
Fnu4HI GCNGC 5 cut(s) 159, 1334, 1337, 1340, 1623
Fsp4HI GCNGC 5 cut(s) 159, 1334, 1337, 1340, 1623
FspBI CTAG 4 cut(s) 554, 896, 1584, 1639
FspI TGCGCA 2 cut(s) 162, 1468
GlaI GCGC 3 cut(s) 162, 494, 1468
GluI GCNGC 5 cut(s) 159, 1334, 1337, 1340, 1623
GsaI CCCAGC 1 cut(s) 1183
HaeIII GGCC 3 cut(s) 581, 1031, 1622
HapII CCGG 1 cut(s) 1403
HgaI GACGC 1 cut(s) 977
HhaI GCGC 3 cut(s) 163, 495, 1469
Hin1I GRCGYC 1 cut(s) 969
Hin6I GCGC 3 cut(s) 161, 493, 1467
HinP1I GCGC 3 cut(s) 161, 493, 1467
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 2 cut(s) 1097, 1563
HinfI GANTC 9 cut(s) 101, 146, 608, 809, 955, 996, 1088, 1157, 1203
HpaII CCGG 1 cut(s) 1403
HphI GGTGA 2 cut(s) 101, 646
Hpy166II GTNNAC 4 cut(s) 7, 253, 1053, 1124
Hpy188I TCNGA 7 cut(s) 123, 361, 548, 795, 814, 1570, 1609
Hpy188III TCNNGA 2 cut(s) 605, 1513
Hpy8I GTNNAC 4 cut(s) 7, 253, 1053, 1124
Hpy99I CGWCG 6 cut(s) 32, 35, 50, 53, 127, 176
HpyAV CCTTC 2 cut(s) 160, 274
HpyCH4III ACNGT 8 cut(s) 89, 242, 412, 820, 986, 1070, 1529, 1579
HpyCH4IV ACGT 2 cut(s) 18, 174
HpyF10VI GCNNNNNNNGC 8 cut(s) 268, 378, 429, 490, 501, 1190, 1339, 1631
HpyF3I CTNAG 6 cut(s) 107, 114, 348, 360, 742, 1435
HpySE526I ACGT 2 cut(s) 18, 174
Hsp92I GRCGYC 1 cut(s) 969
HspAI GCGC 3 cut(s) 161, 493, 1467
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
LmnI GCTCC 4 cut(s) 325, 454, 1381, 1540
Lsp1109I GCAGC 4 cut(s) 145, 1345, 1348, 1351
LweI GCATC 2 cut(s) 878, 1494
MaeI CTAG 4 cut(s) 554, 896, 1584, 1639
MaeII ACGT 2 cut(s) 18, 174
MaeIII GTNAC 2 cut(s) 406, 425
MalI GATC 9 cut(s) 60, 336, 402, 570, 981, 1041, 1213, 1433, 1440
MboI GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
MboII GAAGA 7 cut(s) 593, 698, 889, 1016, 1160, 1277, 1307
MflI RGATCY 4 cut(s) 568, 1039, 1431, 1438
MhlI GDGCHC 2 cut(s) 647, 943
MluCI AATT 9 cut(s) 67, 94, 390, 587, 725, 823, 1410, 1472, 1611
MlyI GAGTC 2 cut(s) 95, 1197
MmeI TCCRAC 3 cut(s) 60, 146, 428
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 4 cut(s) 498, 735, 822, 1095
MslI CAYNNNNRTG 3 cut(s) 514, 766, 987
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 1094
MspI CCGG 1 cut(s) 1403
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 8 cut(s) 268, 378, 429, 490, 501, 1190, 1339, 1631
NdeI CATATG 1 cut(s) 1271
NdeII GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
NlaIV GGNNCC 6 cut(s) 120, 570, 644, 940, 1383, 1507
NmeAIII GCCGAG 1 cut(s) 607
NmuCI GTSAC 2 cut(s) 406, 425
NsbI TGCGCA 2 cut(s) 162, 1468
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 2 cut(s) 717, 1258
OliI CACNNNNGTG 1 cut(s) 987
PaqCI CACCTGC 1 cut(s) 299
PciI ACATGT 1 cut(s) 1254
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 24, 1485
PfeI GAWTC 7 cut(s) 146, 608, 809, 955, 996, 1088, 1157
PflMI CCANNNNNTGG 1 cut(s) 860
PkrI GCNGC 5 cut(s) 160, 1335, 1338, 1341, 1624
PleI GAGTC 2 cut(s) 95, 1197
PpsI GAGTC 2 cut(s) 95, 1197
PscI ACATGT 1 cut(s) 1254
PspFI CCCAGC 1 cut(s) 1179
PspN4I GGNNCC 6 cut(s) 120, 570, 644, 940, 1383, 1507
PspPI GGNCC 2 cut(s) 1302, 1327
PsuI RGATCY 4 cut(s) 568, 1039, 1431, 1438
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 2 cut(s) 1052, 1478
RsaNI GTAC 2 cut(s) 1051, 1477
RseI CAYNNNNRTG 3 cut(s) 514, 766, 987
SaqAI TTAA 4 cut(s) 498, 735, 822, 1095
SatI GCNGC 5 cut(s) 159, 1334, 1337, 1340, 1623
Sau3AI GATC 9 cut(s) 58, 334, 400, 568, 979, 1039, 1211, 1431, 1438
Sau96I GGNCC 2 cut(s) 1302, 1327
SchI GAGTC 2 cut(s) 95, 1197
SduI GDGCHC 2 cut(s) 647, 943
SfaNI GCATC 2 cut(s) 878, 1494
SfcI CTRYAG 1 cut(s) 1198
SinI GGWCC 2 cut(s) 1302, 1327
SmiMI CAYNNNNRTG 3 cut(s) 514, 766, 987
SmlI CTYRAG 3 cut(s) 1094, 1343, 1511
SmoI CTYRAG 3 cut(s) 1094, 1343, 1511
Sse9I AATT 9 cut(s) 67, 94, 390, 587, 725, 823, 1410, 1472, 1611
SsiI CCGC 8 cut(s) 266, 372, 423, 663, 912, 936, 977, 1623
SspI AATATT 1 cut(s) 41
SspMI CTAG 4 cut(s) 554, 896, 1584, 1639
TaaI ACNGT 8 cut(s) 89, 242, 412, 820, 986, 1070, 1529, 1579
TaiI ACGT 2 cut(s) 21, 177
TaqI TCGA 4 cut(s) 403, 1086, 1160, 1488
TasI AATT 9 cut(s) 67, 94, 390, 587, 725, 823, 1410, 1472, 1611
TauI GCSGC 1 cut(s) 1625
TfiI GAWTC 7 cut(s) 146, 608, 809, 955, 996, 1088, 1157
Tru1I TTAA 4 cut(s) 498, 735, 822, 1095
Tru9I TTAA 4 cut(s) 498, 735, 822, 1095
TscAI CASTG 3 cut(s) 434, 565, 665
TseFI GTSAC 2 cut(s) 406, 425
TseI GCWGC 4 cut(s) 158, 1333, 1336, 1339
Tsp45I GTSAC 2 cut(s) 406, 425
TspDTI ATGAA 8 cut(s) 333, 402, 549, 705, 756, 822, 1296, 1422
TspGWI ACGGA 2 cut(s) 456, 467
TspRI CASTG 3 cut(s) 434, 565, 665
Van91I CCANNNNNTGG 1 cut(s) 860
Vha464I CTTAAG 1 cut(s) 1094
VpaK11BI GGWCC 2 cut(s) 1302, 1327
XapI RAATTY 3 cut(s) 67, 390, 587
XceI RCATGY 2 cut(s) 717, 1258
XmiI GTMKAC 1 cut(s) 1123
XspI CTAG 4 cut(s) 554, 896, 1584, 1639
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.