Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001183

Physical Location & Seq

Genomic Coordinates Reverse (-)

79401756 .. 79403112

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0595900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAACTGATCATCATGATGAGGATGATCAGATATACGGAGAAGGAGAGGAGGTGCAAGACAACACCAGCTCAGGCGGAAGCAACAAATTGGTGATACCAGAAGATGGCTACGAATGGAAAAAATATGGACAAAAGTTCATTAAAAATGTTGGAAAGTTCAGGAGCTATTTCAAGTGCCAAAACAGCAATTGTAGAGCCAAGAAGCGAGCCGAGTGGTCGAGCTCCGAGCCTGATGAACTTCGAATAGTGTATGAAGGGGTGCACAATCACACCGATAATAATGCCTCATCTGCAGGATCGGCTTCACATTCACAGCAGCCGGATTCCTCATCATCTTTAAATCCGAGTACTGATGCAAACCGGTATGACTTGTACACACAAGTTTTTGGTAATCAATCCTTCTCCAAGTGGGATAAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

142

Amino Acids

16.1

Weight (kDa)

5.32

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	35 - 91	8.8e-21	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16090 AT2G16090 AT2G16090 AT2G16090 AT2G16090 AT4G34370
fragaria_vesca	FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g40440 FvH4_2g40440
malus_domestica	MD00G1039300.v1.1 MD05G1071700.v1.1 MD08G1037700.v1.1 MD10G1083500.v1.1
prunus_persica	Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.8G106500_v2.0.a1 Prupe.8G106500_v2.0.a1 Prupe.8G106500_v2.0.a1
pyrus_communis	pycom05g06180 pycom08g03000 pycom10g06560 pycom15g02930
rosa_chinensis	RchiOBHm_Chr6g0262251 RchiOBHm_Chr6g0300291
rosa_laevigata	RLG00000011350 RLG00000014443
rosa_multiflora	Rmu_sc0001670.1_g000025 Rmu_sc0002510.1_g000028
rosa_roxburghii	Rroxscaffold_7G00167920 Rroxscaffold_7G00207940
rosa_rugosa	Rorug05G0595800 Rorug05G0595800 Rorug05G0595900 Rorug05G0595900
rosa_samantha	Rh6AG116000 Rh6AG407300 Rh6BG110300 Rh6BG414900 Rh6CG107800 Rh6CG422200 Rh6DG098200 Rh6DG407900
rosa_wichuraiana	Rw0G017080 Rw6G010090 Rw6G035620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	307
AfaI	GTAC	2 cut(s)	352, 377
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	3 cut(s)	72, 168, 225
AluI	AGCT	3 cut(s)	72, 168, 225
Alw21I	GWGCWC	2 cut(s)	227, 267
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	319
AsiGI	ACCGGT	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	227, 267
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BclI	TGATCA	2 cut(s)	10, 28
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	1 cut(s)	352
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	363
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	227, 267
BsiSI	CCGG	2 cut(s)	323, 364
BslI	CCNNNNNNNGG	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	227, 267
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	10, 28, 299
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	3 cut(s)	10, 28, 299
BstAUI	TGTACA	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	13, 31, 302
BstMBI	GATC	3 cut(s)	10, 28, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 293, 302
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	351, 376
CspAI	ACCGGT	1 cut(s)	363
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	9 cut(s)	72, 111, 168, 200, 212, 225, 232, 305, 322
CviKI_1	RGCY	9 cut(s)	72, 111, 168, 200, 212, 225, 232, 305, 322
CviQI	GTAC	2 cut(s)	351, 376
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	3 cut(s)	12, 30, 301
DpnII	GATC	3 cut(s)	10, 28, 299
DraI	TTTAAA	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	20
FaiI	YATR	5 cut(s)	18, 37, 129, 255, 369
FatI	CATG	1 cut(s)	16
FbaI	TGATCA	2 cut(s)	10, 28
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
HapII	CCGG	2 cut(s)	323, 364
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	2 cut(s)	323, 364
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	265, 378
Hpy188I	TCNGA	3 cut(s)	33, 229, 348
Hpy188III	TCNNGA	2 cut(s)	17, 163
Hpy8I	GTNNAC	2 cut(s)	265, 378
HpyAV	CCTTC	3 cut(s)	38, 251, 412
HpyCH4V	TGCA	4 cut(s)	58, 265, 296, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 293, 302
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	20
Ksp22I	TGATCA	2 cut(s)	10, 28
Kzo9I	GATC	3 cut(s)	10, 28, 299
LmnI	GCTCC	2 cut(s)	165, 230
LpnPI	CCDG	8 cut(s)	60, 82, 114, 148, 246, 282, 336, 377
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	346
MalI	GATC	3 cut(s)	12, 30, 301
MboI	GATC	3 cut(s)	10, 28, 299
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	227, 267
MluCI	AATT	2 cut(s)	89, 190
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	16, 43, 46, 298, 340
MseI	TTAA	2 cut(s)	144, 341
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	2 cut(s)	323, 364
MunI	CAATTG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	186, 293, 302
NdeII	GATC	3 cut(s)	10, 28, 299
NlaIII	CATG	1 cut(s)	20
NmeAIII	GCCGAG	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	244
PagI	TCATGA	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	352, 377
RsaNI	GTAC	2 cut(s)	351, 376
RseI	CAYNNNNRTG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	144, 341
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	3 cut(s)	10, 28, 299
ScaI	AGTACT	1 cut(s)	352
SduI	GDGCHC	2 cut(s)	227, 267
SetI	ASST	4 cut(s)	57, 74, 170, 227
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	89, 190
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	227
TaqI	TCGA	2 cut(s)	221, 244
TasI	AATT	2 cut(s)	89, 190
TatI	WGTACW	2 cut(s)	350, 375
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	144, 341
Tru9I	TTAA	2 cut(s)	144, 341
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	130, 252, 270
TspGWI	ACGGA	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.