E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1386 |
| AarI | CACCTGC | 1 cut(s) | 287 |
| Acc36I | ACCTGC | 2 cut(s) | 287, 956 |
| AccB1I | GGYRCC | 3 cut(s) | 107, 630, 1369 |
| AccBSI | CCGCTC | 1 cut(s) | 1683 |
| AccI | GTMKAC | 1 cut(s) | 1111 |
| AccII | CGCG | 1 cut(s) | 666 |
| AciI | CCGC | 5 cut(s) | 98, 229, 927, 1024, 1683 |
| AclWI | GGATC | 4 cut(s) | 77, 824, 1035, 1642 |
| AcsI | RAATTY | 2 cut(s) | 343, 575 |
| AcuI | CTGAAG | 2 cut(s) | 312, 1641 |
| AfaI | GTAC | 5 cut(s) | 32, 381, 640, 700, 986 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 104, 650 |
| AflIII | ACRYGT | 2 cut(s) | 664, 1242 |
| AgsI | TTSAA | 1 cut(s) | 1091 |
| AjnI | CCWGG | 1 cut(s) | 206 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| Alw26I | GTCTC | 2 cut(s) | 797, 936 |
| AlwI | GGATC | 4 cut(s) | 77, 824, 1035, 1642 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1664 |
| Ama87I | CYCGRG | 1 cut(s) | 1147 |
| AoxI | GGCC | 1 cut(s) | 777 |
| ApeKI | GCWGC | 4 cut(s) | 18, 876, 1321, 1324 |
| ApoI | RAATTY | 2 cut(s) | 343, 575 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 405, 437, 516, 548, 894, 926 |
| AspLEI | GCGC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 2 cut(s) | 777, 1315 |
| AsuHPI | GGTGA | 2 cut(s) | 184, 738 |
| AvaI | CYCGRG | 1 cut(s) | 1147 |
| AvaII | GGWCC | 1 cut(s) | 1315 |
| AxyI | CCTNAGG | 1 cut(s) | 191 |
| BaeGI | GKGCMC | 2 cut(s) | 110, 635 |
| BanI | GGYRCC | 3 cut(s) | 107, 630, 1369 |
| BanII | GRGCYC | 1 cut(s) | 1720 |
| BbsI | GAAGAC | 1 cut(s) | 81 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvI | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BccI | CCATC | 1 cut(s) | 169 |
| BceAI | ACGGC | 1 cut(s) | 76 |
| BciT130I | CCWGG | 1 cut(s) | 208 |
| BciVI | GTATCC | 1 cut(s) | 1520 |
| BclI | TGATCA | 1 cut(s) | 1422 |
| BcoDI | GTCTC | 2 cut(s) | 797, 936 |
| BfaI | CTAG | 3 cut(s) | 384, 542, 1707 |
| BfmI | CTRYAG | 1 cut(s) | 710 |
| BfuAI | ACCTGC | 2 cut(s) | 287, 956 |
| BfuI | GTATCC | 1 cut(s) | 1520 |
| BglII | AGATCT | 2 cut(s) | 322, 1603 |
| BisI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| BlpI | GCTNAGC | 1 cut(s) | 1011 |
| BlsI | GCNGC | 4 cut(s) | 20, 878, 1323, 1326 |
| BmcAI | AGTACT | 2 cut(s) | 32, 640 |
| Bme1390I | CCNGG | 1 cut(s) | 208 |
| Bme18I | GGWCC | 1 cut(s) | 1315 |
| BmeT110I | CYCGRG | 1 cut(s) | 1147 |
| BmgT120I | GGNCC | 2 cut(s) | 777, 1315 |
| BmiI | GGNNCC | 5 cut(s) | 109, 632, 931, 1371, 1644 |
| BmrFI | CCNGG | 1 cut(s) | 208 |
| BmsI | GCATC | 5 cut(s) | 72, 565, 1404, 1562, 1676 |
| BpiI | GAAGAC | 1 cut(s) | 81 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 544, 576, 1130, 1162 |
| BpmI | CTGGAG | 2 cut(s) | 333, 1171 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 2 cut(s) | 614, 1352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1602 |
| BsaI | GGTCTC | 1 cut(s) | 936 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 104, 650 |
| Bse1I | ACTGG | 2 cut(s) | 350, 940 |
| Bse21I | CCTNAGG | 1 cut(s) | 191 |
| Bse3DI | GCAATG | 2 cut(s) | 415, 514 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1602 |
| BseBI | CCWGG | 1 cut(s) | 208 |
| BseGI | GGATG | 6 cut(s) | 241, 556, 679, 1273, 1419, 1691 |
| BseJI | GATNNNNATC | 1 cut(s) | 1602 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 104, 650 |
| BseMI | GCAATG | 2 cut(s) | 415, 514 |
| BseMII | CTCAG | 6 cut(s) | 101, 182, 561, 1002, 1168, 1446 |
| BseNI | ACTGG | 2 cut(s) | 350, 940 |
| BseRI | GAGGAG | 2 cut(s) | 633, 1151 |
| BseSI | GKGCMC | 2 cut(s) | 110, 635 |
| BseXI | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BseYI | CCCAGC | 2 cut(s) | 231, 1167 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| BshFI | GGCC | 1 cut(s) | 779 |
| BshNI | GGYRCC | 3 cut(s) | 107, 630, 1369 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1147 |
| BslFI | GGGAC | 1 cut(s) | 825 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 104, 650 |
| BsmAI | GTCTC | 2 cut(s) | 797, 936 |
| BsmFI | GGGAC | 1 cut(s) | 825 |
| BsmI | GAATGC | 1 cut(s) | 661 |
| BsnI | GGCC | 1 cut(s) | 779 |
| Bso31I | GGTCTC | 1 cut(s) | 936 |
| BsoBI | CYCGRG | 1 cut(s) | 1147 |
| Bsp1286I | GDGCHC | 4 cut(s) | 110, 201, 635, 1720 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1011 |
| BspACI | CCGC | 5 cut(s) | 98, 229, 927, 1024, 1683 |
| BspANI | GGCC | 1 cut(s) | 779 |
| BspCNI | CTCAG | 6 cut(s) | 100, 183, 562, 1003, 1167, 1445 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspHI | TCATGA | 1 cut(s) | 1778 |
| BspLI | GGNNCC | 5 cut(s) | 109, 632, 931, 1371, 1644 |
| BspMAI | CTGCAG | 1 cut(s) | 714 |
| BspMI | ACCTGC | 2 cut(s) | 287, 956 |
| BspPI | GGATC | 4 cut(s) | 77, 824, 1035, 1642 |
| BspQI | GCTCTTC | 2 cut(s) | 1248, 1696 |
| BspT107I | GGYRCC | 3 cut(s) | 107, 630, 1369 |
| BspTNI | GGTCTC | 1 cut(s) | 936 |
| BsrBI | CCGCTC | 1 cut(s) | 1683 |
| BsrDI | GCAATG | 2 cut(s) | 415, 514 |
| BsrI | ACTGG | 2 cut(s) | 350, 940 |
| BssNAI | GTATAC | 1 cut(s) | 1112 |
| Bst1107I | GTATAC | 1 cut(s) | 1112 |
| Bst2UI | CCWGG | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 6 cut(s) | 410, 431, 808, 823, 1058, 1567 |
| Bst6I | CTCTTC | 2 cut(s) | 1248, 1696 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 489 |
| BstC8I | GCNNGC | 3 cut(s) | 1017, 1704, 1752 |
| BstDEI | CTNAG | 7 cut(s) | 87, 117, 191, 570, 1011, 1154, 1432 |
| BstF5I | GGATG | 6 cut(s) | 241, 556, 679, 1273, 1419, 1691 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstHHI | GCGC | 1 cut(s) | 483 |
| BstMAI | GTCTC | 2 cut(s) | 797, 936 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 489, 1016, 1021, 1592 |
| BstNI | CCWGG | 1 cut(s) | 208 |
| BstNSI | RCATGY | 1 cut(s) | 1246 |
| BstSCI | CCNGG | 1 cut(s) | 206 |
| BstSFI | CTRYAG | 1 cut(s) | 710 |
| BstSLI | GKGCMC | 2 cut(s) | 110, 635 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BstV2I | GAAGAC | 1 cut(s) | 81 |
| BstX2I | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1363 |
| BstYI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| BstZ17I | GTATAC | 1 cut(s) | 1112 |
| Bsu36I | CCTNAGG | 1 cut(s) | 191 |
| BsuI | GTATCC | 1 cut(s) | 1520 |
| BsuRI | GGCC | 1 cut(s) | 779 |
| BtsCI | GGATG | 6 cut(s) | 241, 556, 679, 1273, 1419, 1691 |
| BtsI | GCAGTG | 1 cut(s) | 335 |
| BtsIMutI | CAGTG | 5 cut(s) | 95, 335, 819, 933, 1440 |
| BveI | ACCTGC | 2 cut(s) | 287, 956 |
| Cac8I | GCNNGC | 3 cut(s) | 1017, 1704, 1752 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1664 |
| CciI | TCATGA | 1 cut(s) | 1778 |
| CfoI | GCGC | 1 cut(s) | 483 |
| Cfr13I | GGNCC | 2 cut(s) | 777, 1315 |
| Csp6I | GTAC | 5 cut(s) | 31, 380, 639, 699, 985 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 648, 683 |
| CviAII | CATG | 7 cut(s) | 203, 317, 493, 756, 951, 1243, 1779 |
| CviQI | GTAC | 5 cut(s) | 31, 380, 639, 699, 985 |
| DdeI | CTNAG | 7 cut(s) | 87, 117, 191, 570, 1011, 1154, 1432 |
| Eam1104I | CTCTTC | 2 cut(s) | 1248, 1696 |
| EarI | CTCTTC | 2 cut(s) | 1248, 1696 |
| EciI | GGCGGA | 2 cut(s) | 87, 942 |
| Eco24I | GRGCYC | 1 cut(s) | 1720 |
| Eco31I | GGTCTC | 1 cut(s) | 936 |
| Eco47I | GGWCC | 1 cut(s) | 1315 |
| Eco57I | CTGAAG | 2 cut(s) | 312, 1641 |
| Eco81I | CCTNAGG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 1147 |
| EcoRI | GAATTC | 1 cut(s) | 343 |
| EcoRII | CCWGG | 1 cut(s) | 206 |
| EcoT38I | GRGCYC | 1 cut(s) | 1720 |
| FaeI | CATG | 7 cut(s) | 206, 320, 496, 759, 954, 1246, 1782 |
| FaqI | GGGAC | 1 cut(s) | 825 |
| FatI | CATG | 7 cut(s) | 202, 316, 492, 755, 950, 1242, 1778 |
| FauI | CCCGC | 1 cut(s) | 1017 |
| FbaI | TGATCA | 1 cut(s) | 1422 |
| FblI | GTMKAC | 1 cut(s) | 1111 |
| Fnu4HI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| FokI | GGATG | 6 cut(s) | 248, 543, 686, 1280, 1426, 1698 |
| FriOI | GRGCYC | 1 cut(s) | 1720 |
| Fsp4HI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| FspBI | CTAG | 3 cut(s) | 384, 542, 1707 |
| GlaI | GCGC | 1 cut(s) | 482 |
| GluI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| GsaI | CCCAGC | 2 cut(s) | 235, 1171 |
| GsuI | CTGGAG | 2 cut(s) | 333, 1171 |
| HaeIII | GGCC | 1 cut(s) | 779 |
| HhaI | GCGC | 1 cut(s) | 483 |
| Hin1II | CATG | 7 cut(s) | 206, 320, 496, 759, 954, 1246, 1782 |
| Hin6I | GCGC | 1 cut(s) | 481 |
| HinP1I | GCGC | 1 cut(s) | 481 |
| HincII | GTYRAC | 1 cut(s) | 391 |
| HindII | GTYRAC | 1 cut(s) | 391 |
| HindIII | AAGCTT | 2 cut(s) | 245, 1085 |
| HphI | GGTGA | 2 cut(s) | 184, 738 |
| Hpy166II | GTNNAC | 4 cut(s) | 391, 413, 902, 1112 |
| Hpy8I | GTNNAC | 4 cut(s) | 391, 413, 902, 1112 |
| Hpy99I | CGWCG | 1 cut(s) | 26 |
| HpyAV | CCTTC | 7 cut(s) | 97, 148, 1114, 1135, 1543, 1665, 1705 |
| HpyCH4III | ACNGT | 6 cut(s) | 410, 431, 808, 823, 1058, 1567 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 489, 1016, 1021, 1592 |
| HpyF3I | CTNAG | 7 cut(s) | 87, 117, 191, 570, 1011, 1154, 1432 |
| Hsp92II | CATG | 7 cut(s) | 206, 320, 496, 759, 954, 1246, 1782 |
| HspAI | GCGC | 1 cut(s) | 481 |
| Ksp22I | TGATCA | 1 cut(s) | 1422 |
| LguI | GCTCTTC | 2 cut(s) | 1248, 1696 |
| LmnI | GCTCC | 4 cut(s) | 196, 769, 929, 1528 |
| Lsp1109I | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| LweI | GCATC | 5 cut(s) | 72, 565, 1404, 1562, 1676 |
| MaeI | CTAG | 3 cut(s) | 384, 542, 1707 |
| MaeIII | GTNAC | 5 cut(s) | 301, 518, 848, 1058, 1094 |
| MbiI | CCGCTC | 1 cut(s) | 1683 |
| MboII | GAAGA | 8 cut(s) | 86, 332, 386, 581, 877, 1004, 1265, 1683 |
| MfeI | CAATTG | 1 cut(s) | 1610 |
| MflI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| MhlI | GDGCHC | 4 cut(s) | 110, 201, 635, 1720 |
| MluCI | AATT | 6 cut(s) | 123, 343, 575, 811, 1349, 1610 |
| MluI | ACGCGT | 1 cut(s) | 664 |
| MlyI | GAGTC | 5 cut(s) | 44, 71, 605, 1139, 1176 |
| MmeI | TCCRAC | 1 cut(s) | 416 |
| MseI | TTAA | 4 cut(s) | 810, 1083, 1100, 1263 |
| MslI | CAYNNNNRTG | 2 cut(s) | 975, 1412 |
| MspA1I | CMGCKG | 2 cut(s) | 231, 1167 |
| MspR9I | CCNGG | 1 cut(s) | 208 |
| MunI | CAATTG | 1 cut(s) | 1610 |
| Mva1269I | GAATGC | 1 cut(s) | 661 |
| MvaI | CCWGG | 1 cut(s) | 208 |
| MvnI | CGCG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 489, 1016, 1021, 1592 |
| NlaIII | CATG | 7 cut(s) | 206, 320, 496, 759, 954, 1246, 1782 |
| NlaIV | GGNNCC | 5 cut(s) | 109, 632, 931, 1371, 1644 |
| NmeAIII | GCCGAG | 1 cut(s) | 815 |
| NmuCI | GTSAC | 2 cut(s) | 518, 848 |
| NspI | RCATGY | 1 cut(s) | 1246 |
| PaeR7I | CTCGAG | 1 cut(s) | 1147 |
| PagI | TCATGA | 1 cut(s) | 1778 |
| PaqCI | CACCTGC | 1 cut(s) | 287 |
| PciI | ACATGT | 1 cut(s) | 1242 |
| PciSI | GCTCTTC | 2 cut(s) | 1248, 1696 |
| PctI | GAATGC | 1 cut(s) | 661 |
| PfeI | GAWTC | 6 cut(s) | 94, 134, 524, 797, 1076, 1775 |
| PkrI | GCNGC | 4 cut(s) | 20, 878, 1323, 1326 |
| PleI | GAGTC | 5 cut(s) | 44, 71, 604, 1139, 1176 |
| PpsI | GAGTC | 5 cut(s) | 44, 71, 604, 1139, 1176 |
| PscI | ACATGT | 1 cut(s) | 1242 |
| PsiI | TTATAA | 1 cut(s) | 1386 |
| Psp6I | CCWGG | 1 cut(s) | 206 |
| PspFI | CCCAGC | 2 cut(s) | 231, 1167 |
| PspGI | CCWGG | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 5 cut(s) | 109, 632, 931, 1371, 1644 |
| PspPI | GGNCC | 2 cut(s) | 777, 1315 |
| PspXI | VCTCGAGB | 1 cut(s) | 1147 |
| PstI | CTGCAG | 1 cut(s) | 714 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1664 |
| PsuI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| PvuII | CAGCTG | 1 cut(s) | 1167 |
| RsaI | GTAC | 5 cut(s) | 32, 381, 640, 700, 986 |
| RsaNI | GTAC | 5 cut(s) | 31, 380, 639, 699, 985 |
| RseI | CAYNNNNRTG | 2 cut(s) | 975, 1412 |
| SapI | GCTCTTC | 2 cut(s) | 1248, 1696 |
| SaqAI | TTAA | 4 cut(s) | 810, 1083, 1100, 1263 |
| SatI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| Sau96I | GGNCC | 2 cut(s) | 777, 1315 |
| ScaI | AGTACT | 2 cut(s) | 32, 640 |
| SchI | GAGTC | 5 cut(s) | 44, 71, 605, 1139, 1176 |
| ScrFI | CCNGG | 1 cut(s) | 208 |
| SduI | GDGCHC | 4 cut(s) | 110, 201, 635, 1720 |
| SfaNI | GCATC | 5 cut(s) | 72, 565, 1404, 1562, 1676 |
| SfcI | CTRYAG | 1 cut(s) | 710 |
| Sfr274I | CTCGAG | 1 cut(s) | 1147 |
| SinI | GGWCC | 1 cut(s) | 1315 |
| SlaI | CTCGAG | 1 cut(s) | 1147 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 975, 1412 |
| SmlI | CTYRAG | 3 cut(s) | 593, 1147, 1331 |
| SmoI | CTYRAG | 3 cut(s) | 593, 1147, 1331 |
| Sse9I | AATT | 6 cut(s) | 123, 343, 575, 811, 1349, 1610 |
| SsiI | CCGC | 5 cut(s) | 98, 229, 927, 1024, 1683 |
| SspMI | CTAG | 3 cut(s) | 384, 542, 1707 |
| StyD4I | CCNGG | 1 cut(s) | 206 |
| TaaI | ACNGT | 6 cut(s) | 410, 431, 808, 823, 1058, 1567 |
| TaqI | TCGA | 4 cut(s) | 66, 940, 1148, 1696 |
| TasI | AATT | 6 cut(s) | 123, 343, 575, 811, 1349, 1610 |
| TatI | WGTACW | 3 cut(s) | 30, 638, 698 |
| TfiI | GAWTC | 6 cut(s) | 94, 134, 524, 797, 1076, 1775 |
| Tru1I | TTAA | 4 cut(s) | 810, 1083, 1100, 1263 |
| Tru9I | TTAA | 4 cut(s) | 810, 1083, 1100, 1263 |
| TscAI | CASTG | 5 cut(s) | 95, 342, 826, 940, 1447 |
| TseFI | GTSAC | 2 cut(s) | 518, 848 |
| TseI | GCWGC | 4 cut(s) | 18, 876, 1321, 1324 |
| Tsp45I | GTSAC | 2 cut(s) | 518, 848 |
| TspDTI | ATGAA | 8 cut(s) | 212, 333, 744, 810, 1206, 1212, 1410, 1767 |
| TspGWI | ACGGA | 1 cut(s) | 1655 |
| TspRI | CASTG | 5 cut(s) | 95, 342, 826, 940, 1447 |
| VpaK11BI | GGWCC | 1 cut(s) | 1315 |
| XapI | RAATTY | 2 cut(s) | 343, 575 |
| XceI | RCATGY | 1 cut(s) | 1246 |
| XhoI | CTCGAG | 1 cut(s) | 1147 |
| XmiI | GTMKAC | 1 cut(s) | 1111 |
| XspI | CTAG | 3 cut(s) | 384, 542, 1707 |
| ZrmI | AGTACT | 2 cut(s) | 32, 640 |