Prupe.8G106500_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13768244 .. 13774081
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G106500.1

Sequence Viewer

Length: 1782 bp
ATGGAGGATTGTTTGGGCAGCGACGATGAGTACTACTACTCCGATCAGGACTCTCTTGACGGCATCGAGAACGAAGACTCTGATCCTCAGTGGATTCCGCCGAAGGGCACCACAACTAAGGTAATTACCAAAGAATCTCTGTTGTCGGCACAGAAGGAGGATTTGCGTAGGGTGATGGACTTACTTTTCCTGAGGGAGCACCATGCCAGGACTTTGCTTATTCATTACCGCTGGGATGTTGAGAAGCTTTTTGCAGTCCTTGTAGAGAAAGGAAAACCTTGCTTGTTTTCTGAAGCAGGTGTAACTCTTGTTGAGCATGAAGATCTTGACCCACCACTGCCGAATTCTCCAGTAATGTGTGCTATTTGTATAGAAGATGTACCTAGTGTTGACACGACAAAAATGGACTGTGGACATTGCTTTTGCAACAGTTGTTGGACAGAACATTTTGTTGTAAAGATAAATGAGGGTCAAAGTAAGCGCATTAGGTGCATGGCTCACAAATGCAATGCCATTTGTGACGAATCTGTGGTCAGAAATCTAGTCAGTAAGAGGCATCCTCATCTTGCTGAGAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAGGACAATAAAAGGGTCAAGTGGTGCCCAAGTACTCCTCATTGTGGGAATGCAATACGCGTGGAGGATGATGAGTTTTGCGAGATAGAATGTACTTGTGGTCTGCAGTTTTGTTTCAGTTGTTTATCACAAGCTCATTCACCTTGTTCATGTTTGATGTGGGAGCTTTGGGCCAAGAAGTGCCGAGATGAATCAGAGACAGTTAATTGGATCACTGTCCATACAAAACCTTGTCCCAAGTGTCACAAACCTGTGGAGAAGAATGGTGGCTGCAACCTCGTAAGCTGTATCTGTGGACAAGCATTTTGTTGGCTATGTGGCGGAGCCACTGGTCGAGACCATACATGGTCAAGTATTGCAGGTCATAGTTGTGGTCGGTACAAAGAAGATAAAGAGCAAAACGCTGAGCGTGCAAAGCGGGATCTTTACCGATATATGCACTATCATAACCGTTACAAAGCTCATACTGATTCCTTTAAGCTTGAAAGTAACTTAAAGGAGAGTATACAAAAGAAGGTGGCAGTTTCAGAGGAGAAGGACTCGAGGCTCAGAGATTTCAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGGTCAAGGAGAGTTCTTTCATATTCATACCCATTTGCTTTTTACATGTTTGGAGAAGAGCTGTTTAAGGATGAGATGACAAAGGAGGAAAGGGAAATAAAACAGCATTTGTTTGAGGACCAGCAGCAGCAACTTGAGGAAAATGTTGAGAAATTATCCAAGTTCTTGGAGGCACCTTTTGATGATTATAAGGAGAATGAAGTTATGGACATAAGGATGCAAGTGATCAATCTCTCAGCAATCACTGATACCCTCTGTCAGAAAATGTATGACTGCATTGAGAGTGATCTATTGGGTTCTCTACAACTTGGTATCCACAATATAGCTCCTTACAGGTCAAAGGGCATTGAGAAGGCATCAGAACTTACTGTTTGTTGGGTCAATAAAGCTAATAATGCTGATAAAGATCTACAATTGCATTGTGGCACAAGTGGAGGATCAACGGAACCAGAACAACCTTCAGGTTCTGGAAGTTCAGATGAGAGCGGATGCTCTTCTCGAAAGCGTGCTAGGAAGGGGGCTCTTGGAGGTGGTTTTTTTGATCTGAACTTGCCAGCAGAGGTTATTGACAAATCTGATTCATGA

Protein Analysis

594

Amino Acids

67.76

Weight (kDa)

5.53

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1386
AarI CACCTGC 1 cut(s) 287
Acc36I ACCTGC 2 cut(s) 287, 956
AccB1I GGYRCC 3 cut(s) 107, 630, 1369
AccBSI CCGCTC 1 cut(s) 1683
AccI GTMKAC 1 cut(s) 1111
AccII CGCG 1 cut(s) 666
AciI CCGC 5 cut(s) 98, 229, 927, 1024, 1683
AclWI GGATC 4 cut(s) 77, 824, 1035, 1642
AcsI RAATTY 2 cut(s) 343, 575
AcuI CTGAAG 2 cut(s) 312, 1641
AfaI GTAC 5 cut(s) 32, 381, 640, 700, 986
AfiI CCNNNNNNNGG 2 cut(s) 104, 650
AflIII ACRYGT 2 cut(s) 664, 1242
AgsI TTSAA 1 cut(s) 1091
AjnI CCWGG 1 cut(s) 206
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 797, 936
AlwI GGATC 4 cut(s) 77, 824, 1035, 1642
AlwNI CAGNNNCTG 1 cut(s) 1664
Ama87I CYCGRG 1 cut(s) 1147
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 4 cut(s) 18, 876, 1321, 1324
ApoI RAATTY 2 cut(s) 343, 575
ArsI GACNNNNNNTTYG 6 cut(s) 405, 437, 516, 548, 894, 926
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 777, 1315
AsuHPI GGTGA 2 cut(s) 184, 738
AvaI CYCGRG 1 cut(s) 1147
AvaII GGWCC 1 cut(s) 1315
AxyI CCTNAGG 1 cut(s) 191
BaeGI GKGCMC 2 cut(s) 110, 635
BanI GGYRCC 3 cut(s) 107, 630, 1369
BanII GRGCYC 1 cut(s) 1720
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 30, 863, 1333, 1336
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 1 cut(s) 1520
BclI TGATCA 1 cut(s) 1422
BcoDI GTCTC 2 cut(s) 797, 936
BfaI CTAG 3 cut(s) 384, 542, 1707
BfmI CTRYAG 1 cut(s) 710
BfuAI ACCTGC 2 cut(s) 287, 956
BfuI GTATCC 1 cut(s) 1520
BglII AGATCT 2 cut(s) 322, 1603
BisI GCNGC 4 cut(s) 19, 877, 1322, 1325
BlpI GCTNAGC 1 cut(s) 1011
BlsI GCNGC 4 cut(s) 20, 878, 1323, 1326
BmcAI AGTACT 2 cut(s) 32, 640
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 1315
BmeT110I CYCGRG 1 cut(s) 1147
BmgT120I GGNCC 2 cut(s) 777, 1315
BmiI GGNNCC 5 cut(s) 109, 632, 931, 1371, 1644
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 5 cut(s) 72, 565, 1404, 1562, 1676
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 4 cut(s) 544, 576, 1130, 1162
BpmI CTGGAG 2 cut(s) 333, 1171
Bpu1102I GCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 2 cut(s) 614, 1352
BsaBI GATNNNNATC 1 cut(s) 1602
BsaI GGTCTC 1 cut(s) 936
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 650
Bse1I ACTGG 2 cut(s) 350, 940
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 415, 514
Bse8I GATNNNNATC 1 cut(s) 1602
BseBI CCWGG 1 cut(s) 208
BseGI GGATG 6 cut(s) 241, 556, 679, 1273, 1419, 1691
BseJI GATNNNNATC 1 cut(s) 1602
BseLI CCNNNNNNNGG 2 cut(s) 104, 650
BseMI GCAATG 2 cut(s) 415, 514
BseMII CTCAG 6 cut(s) 101, 182, 561, 1002, 1168, 1446
BseNI ACTGG 2 cut(s) 350, 940
BseRI GAGGAG 2 cut(s) 633, 1151
BseSI GKGCMC 2 cut(s) 110, 635
BseXI GCAGC 4 cut(s) 30, 863, 1333, 1336
BseYI CCCAGC 2 cut(s) 231, 1167
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 1 cut(s) 779
BshNI GGYRCC 3 cut(s) 107, 630, 1369
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 1147
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 2 cut(s) 104, 650
BsmAI GTCTC 2 cut(s) 797, 936
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 1 cut(s) 779
Bso31I GGTCTC 1 cut(s) 936
BsoBI CYCGRG 1 cut(s) 1147
Bsp1286I GDGCHC 4 cut(s) 110, 201, 635, 1720
Bsp1720I GCTNAGC 1 cut(s) 1011
BspACI CCGC 5 cut(s) 98, 229, 927, 1024, 1683
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 6 cut(s) 100, 183, 562, 1003, 1167, 1445
BspFNI CGCG 1 cut(s) 666
BspHI TCATGA 1 cut(s) 1778
BspLI GGNNCC 5 cut(s) 109, 632, 931, 1371, 1644
BspMAI CTGCAG 1 cut(s) 714
BspMI ACCTGC 2 cut(s) 287, 956
BspPI GGATC 4 cut(s) 77, 824, 1035, 1642
BspQI GCTCTTC 2 cut(s) 1248, 1696
BspT107I GGYRCC 3 cut(s) 107, 630, 1369
BspTNI GGTCTC 1 cut(s) 936
BsrBI CCGCTC 1 cut(s) 1683
BsrDI GCAATG 2 cut(s) 415, 514
BsrI ACTGG 2 cut(s) 350, 940
BssNAI GTATAC 1 cut(s) 1112
Bst1107I GTATAC 1 cut(s) 1112
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 6 cut(s) 410, 431, 808, 823, 1058, 1567
Bst6I CTCTTC 2 cut(s) 1248, 1696
BstAPI GCANNNNNTGC 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 1017, 1704, 1752
BstDEI CTNAG 7 cut(s) 87, 117, 191, 570, 1011, 1154, 1432
BstF5I GGATG 6 cut(s) 241, 556, 679, 1273, 1419, 1691
BstFNI CGCG 1 cut(s) 666
BstHHI GCGC 1 cut(s) 483
BstMAI GTCTC 2 cut(s) 797, 936
BstMWI GCNNNNNNNGC 4 cut(s) 489, 1016, 1021, 1592
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 710
BstSLI GKGCMC 2 cut(s) 110, 635
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 4 cut(s) 30, 863, 1333, 1336
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 3 cut(s) 322, 1027, 1603
BstXI CCANNNNNNTGG 1 cut(s) 1363
BstYI RGATCY 3 cut(s) 322, 1027, 1603
BstZ17I GTATAC 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 1520
BsuRI GGCC 1 cut(s) 779
BtsCI GGATG 6 cut(s) 241, 556, 679, 1273, 1419, 1691
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 5 cut(s) 95, 335, 819, 933, 1440
BveI ACCTGC 2 cut(s) 287, 956
Cac8I GCNNGC 3 cut(s) 1017, 1704, 1752
CaiI CAGNNNCTG 1 cut(s) 1664
CciI TCATGA 1 cut(s) 1778
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 777, 1315
Csp6I GTAC 5 cut(s) 31, 380, 639, 699, 985
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 7 cut(s) 203, 317, 493, 756, 951, 1243, 1779
CviQI GTAC 5 cut(s) 31, 380, 639, 699, 985
DdeI CTNAG 7 cut(s) 87, 117, 191, 570, 1011, 1154, 1432
Eam1104I CTCTTC 2 cut(s) 1248, 1696
EarI CTCTTC 2 cut(s) 1248, 1696
EciI GGCGGA 2 cut(s) 87, 942
Eco24I GRGCYC 1 cut(s) 1720
Eco31I GGTCTC 1 cut(s) 936
Eco47I GGWCC 1 cut(s) 1315
Eco57I CTGAAG 2 cut(s) 312, 1641
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 1147
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 1720
FaeI CATG 7 cut(s) 206, 320, 496, 759, 954, 1246, 1782
FaqI GGGAC 1 cut(s) 825
FatI CATG 7 cut(s) 202, 316, 492, 755, 950, 1242, 1778
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 1 cut(s) 1422
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 4 cut(s) 19, 877, 1322, 1325
FokI GGATG 6 cut(s) 248, 543, 686, 1280, 1426, 1698
FriOI GRGCYC 1 cut(s) 1720
Fsp4HI GCNGC 4 cut(s) 19, 877, 1322, 1325
FspBI CTAG 3 cut(s) 384, 542, 1707
GlaI GCGC 1 cut(s) 482
GluI GCNGC 4 cut(s) 19, 877, 1322, 1325
GsaI CCCAGC 2 cut(s) 235, 1171
GsuI CTGGAG 2 cut(s) 333, 1171
HaeIII GGCC 1 cut(s) 779
HhaI GCGC 1 cut(s) 483
Hin1II CATG 7 cut(s) 206, 320, 496, 759, 954, 1246, 1782
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 245, 1085
HphI GGTGA 2 cut(s) 184, 738
Hpy166II GTNNAC 4 cut(s) 391, 413, 902, 1112
Hpy8I GTNNAC 4 cut(s) 391, 413, 902, 1112
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 7 cut(s) 97, 148, 1114, 1135, 1543, 1665, 1705
HpyCH4III ACNGT 6 cut(s) 410, 431, 808, 823, 1058, 1567
HpyF10VI GCNNNNNNNGC 4 cut(s) 489, 1016, 1021, 1592
HpyF3I CTNAG 7 cut(s) 87, 117, 191, 570, 1011, 1154, 1432
Hsp92II CATG 7 cut(s) 206, 320, 496, 759, 954, 1246, 1782
HspAI GCGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 1422
LguI GCTCTTC 2 cut(s) 1248, 1696
LmnI GCTCC 4 cut(s) 196, 769, 929, 1528
Lsp1109I GCAGC 4 cut(s) 30, 863, 1333, 1336
LweI GCATC 5 cut(s) 72, 565, 1404, 1562, 1676
MaeI CTAG 3 cut(s) 384, 542, 1707
MaeIII GTNAC 5 cut(s) 301, 518, 848, 1058, 1094
MbiI CCGCTC 1 cut(s) 1683
MboII GAAGA 8 cut(s) 86, 332, 386, 581, 877, 1004, 1265, 1683
MfeI CAATTG 1 cut(s) 1610
MflI RGATCY 3 cut(s) 322, 1027, 1603
MhlI GDGCHC 4 cut(s) 110, 201, 635, 1720
MluCI AATT 6 cut(s) 123, 343, 575, 811, 1349, 1610
MluI ACGCGT 1 cut(s) 664
MlyI GAGTC 5 cut(s) 44, 71, 605, 1139, 1176
MmeI TCCRAC 1 cut(s) 416
MseI TTAA 4 cut(s) 810, 1083, 1100, 1263
MslI CAYNNNNRTG 2 cut(s) 975, 1412
MspA1I CMGCKG 2 cut(s) 231, 1167
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 1610
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 666
MwoI GCNNNNNNNGC 4 cut(s) 489, 1016, 1021, 1592
NlaIII CATG 7 cut(s) 206, 320, 496, 759, 954, 1246, 1782
NlaIV GGNNCC 5 cut(s) 109, 632, 931, 1371, 1644
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 2 cut(s) 518, 848
NspI RCATGY 1 cut(s) 1246
PaeR7I CTCGAG 1 cut(s) 1147
PagI TCATGA 1 cut(s) 1778
PaqCI CACCTGC 1 cut(s) 287
PciI ACATGT 1 cut(s) 1242
PciSI GCTCTTC 2 cut(s) 1248, 1696
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 6 cut(s) 94, 134, 524, 797, 1076, 1775
PkrI GCNGC 4 cut(s) 20, 878, 1323, 1326
PleI GAGTC 5 cut(s) 44, 71, 604, 1139, 1176
PpsI GAGTC 5 cut(s) 44, 71, 604, 1139, 1176
PscI ACATGT 1 cut(s) 1242
PsiI TTATAA 1 cut(s) 1386
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 2 cut(s) 231, 1167
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 5 cut(s) 109, 632, 931, 1371, 1644
PspPI GGNCC 2 cut(s) 777, 1315
PspXI VCTCGAGB 1 cut(s) 1147
PstI CTGCAG 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 1664
PsuI RGATCY 3 cut(s) 322, 1027, 1603
PvuII CAGCTG 1 cut(s) 1167
RsaI GTAC 5 cut(s) 32, 381, 640, 700, 986
RsaNI GTAC 5 cut(s) 31, 380, 639, 699, 985
RseI CAYNNNNRTG 2 cut(s) 975, 1412
SapI GCTCTTC 2 cut(s) 1248, 1696
SaqAI TTAA 4 cut(s) 810, 1083, 1100, 1263
SatI GCNGC 4 cut(s) 19, 877, 1322, 1325
Sau96I GGNCC 2 cut(s) 777, 1315
ScaI AGTACT 2 cut(s) 32, 640
SchI GAGTC 5 cut(s) 44, 71, 605, 1139, 1176
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 4 cut(s) 110, 201, 635, 1720
SfaNI GCATC 5 cut(s) 72, 565, 1404, 1562, 1676
SfcI CTRYAG 1 cut(s) 710
Sfr274I CTCGAG 1 cut(s) 1147
SinI GGWCC 1 cut(s) 1315
SlaI CTCGAG 1 cut(s) 1147
SmiMI CAYNNNNRTG 2 cut(s) 975, 1412
SmlI CTYRAG 3 cut(s) 593, 1147, 1331
SmoI CTYRAG 3 cut(s) 593, 1147, 1331
Sse9I AATT 6 cut(s) 123, 343, 575, 811, 1349, 1610
SsiI CCGC 5 cut(s) 98, 229, 927, 1024, 1683
SspMI CTAG 3 cut(s) 384, 542, 1707
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 6 cut(s) 410, 431, 808, 823, 1058, 1567
TaqI TCGA 4 cut(s) 66, 940, 1148, 1696
TasI AATT 6 cut(s) 123, 343, 575, 811, 1349, 1610
TatI WGTACW 3 cut(s) 30, 638, 698
TfiI GAWTC 6 cut(s) 94, 134, 524, 797, 1076, 1775
Tru1I TTAA 4 cut(s) 810, 1083, 1100, 1263
Tru9I TTAA 4 cut(s) 810, 1083, 1100, 1263
TscAI CASTG 5 cut(s) 95, 342, 826, 940, 1447
TseFI GTSAC 2 cut(s) 518, 848
TseI GCWGC 4 cut(s) 18, 876, 1321, 1324
Tsp45I GTSAC 2 cut(s) 518, 848
TspDTI ATGAA 8 cut(s) 212, 333, 744, 810, 1206, 1212, 1410, 1767
TspGWI ACGGA 1 cut(s) 1655
TspRI CASTG 5 cut(s) 95, 342, 826, 940, 1447
VpaK11BI GGWCC 1 cut(s) 1315
XapI RAATTY 2 cut(s) 343, 575
XceI RCATGY 1 cut(s) 1246
XhoI CTCGAG 1 cut(s) 1147
XmiI GTMKAC 1 cut(s) 1111
XspI CTAG 3 cut(s) 384, 542, 1707
ZrmI AGTACT 2 cut(s) 32, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.