FvH4_2g40440

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28791911 .. 28795648
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40440.t1

Sequence Viewer

Length: 1593 bp
ATGGAGGACGACTATTATGTGAGCAGCGAGGACGAAGGCTACTATGACGAGGAGGATAATTATCGCGAGGATAATTTGGAGGAGGAAATGATGGCCTACGTTGAGAGTGAGACTCCAAAGTGTGAGGTTTCATCCACTAAGGTAATTTCGAAAGAATCTCTGTTGGCTGCACAGAGGGGAGATGTGCAGAGGGTGATGGATGTGCTATCACTGAAAGAGTACCATGCCCGAACCTTGCTCATCCATTATCGTTGGGATGTCGACAAGGTGCTTGCTGTGTATGTAGAGAGGGGGAAGGAGTTACTATACGAAAAGGCAGGTGTGACTATGGAGGAGCATGACACATCACAGCTTTCTTCTGAGGTTATGTGTGATATTTGCATGGAAGAAATTCCTGCTAATGAGGTCACGGTTATGGATTGCAACCACTGTTTTTGTAACAAATGTTGGACAGAGCATTTCATTGTAAAAATAAATGAGGGTCAAAGTAGGCGCATCAAATGCATGGCACACAAGTGCAATGCTGTTTGTGATGAAGCAATAATCAGAAGTCTGGTCAGTGCAAGGGATCCTAATCTTGCAGAGAAGTTTGACCGTTTTCTTCTGGAATCATATATTGAGGATAATAGAAAAGTGAAGTGGTGCCCGAGTGTTCCTCATTGCGGAAATGCTATACGCATTGAGGAAGATGAATTAATCGAGGTTCAATGTGCATGTGGAAAGCAATTCTGCTTTAGGTGTTTATGTGAAGCACACTCTCCTTGTTCATGCCAAATGTGGGAACAATGGTTGAAGAAGTGTGTAGATGAATCACAGACTGTTAATTACATTTCAGTCAACACAAAGCCTTGCCCAAAATGTAATAAGCTGGTTAACAAGGATGGAGGATGCAATCTAGTTACCTGTATCTGTGGACAACCATTCTGTTGGCTCTGTGGTGCCCCAACTGGTGCAGATCATACATGGGATTCCATTGCAGGTCATGAGTGTGGACGATTCAAAGAAGATGAGGAGACAGACATTGAGCAAACCAAGAAGGACCTATTTCGTTATACTCACTATTTCAACCGTTATCAAGCTCATAAAGATTCTCTTAAGCTTGAAGCTACGCTGAAGGAAACTGTAGAAAGAAAGATAAAATATTTGGAAGAAAACTTATCGTCATCTAAAGATTATAGCTGGGCAATCAATGCGATCAACAGACTCTTTAGATCAAGGAGAATTATTGCGTATTCCTACCCATTTGCATATCACATGTTTGGTGACCTTTTCAAAAAAGAGATGACATCAGAACAGAAGACAATAAAACAGAACTTGTTTGAGGACCAGCAGCAGCAGCTTGAGGCAAGCCTGGAGAAGCTTTCTATGCTTACACAGGAACCTTTTGAGCATTATTCAGAGGAGAAACTTCACGATTTAAAATTGAGGATGATGAATCTTTCTTCGCTTGTTGATAAGCTCTGCCTAAAATTGTTCGAATGCATTGAGTATGATCTGCTGGGAAAACTTCAATTTTCAGTTCACAGAATTGTTTCTTACAACTCGGACGGAGTGGAGAAAGCATCAGAAATTAACAGTTTGTCGGGATTCTGA

Protein Analysis

531

Amino Acids

61.69

Weight (kDa)

5.12

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 57 - 96 1.4e-08 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 195 - 257 2.3e-14 IBR domain, a half RING-finger domain
IBR_2 PF22605 277 - 314 3e-06 IBR domain
IBR_1 PF22191 280 - 315 8.4e-07 IBR domain
Rcat_RNF216 PF26200 281 - 348 2e-07 RNF216 Rcat domain
Ariadne PF19422 350 - 526 4.7e-78 Ariadne domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 2 cut(s) 308, 968
AccB1I GGYRCC 2 cut(s) 642, 938
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 663
AclWI GGATC 2 cut(s) 563, 576
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 1133
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 662, 778
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 7 cut(s) 707, 793, 1000, 1066, 1103, 1273, 1511
AjnI CCWGG 1 cut(s) 1350
AleI CACNNNNGTG 1 cut(s) 514
AluBI AGCT 9 cut(s) 352, 868, 1079, 1099, 1106, 1179, 1339, 1360, 1459
AluI AGCT 9 cut(s) 352, 868, 1079, 1099, 1106, 1179, 1339, 1360, 1459
Alw26I GTCTC 2 cut(s) 104, 1007
AlwI GGATC 2 cut(s) 563, 576
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 5 cut(s) 24, 167, 1330, 1333, 1336
ApoI RAATTY 1 cut(s) 390
AseI ATTAAT 1 cut(s) 695
Asp700I GAANNNNTTC 2 cut(s) 390, 1531
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 1039, 1324
AsuHPI GGTGA 2 cut(s) 205, 1274
AsuII TTCGAA 2 cut(s) 149, 1476
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 1039, 1324
BaeGI GKGCMC 2 cut(s) 647, 943
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 2 cut(s) 642, 938
BbsI GAAGAC 1 cut(s) 1304
BbvI GCAGC 5 cut(s) 36, 154, 1342, 1345, 1348
BccI CCATC 3 cut(s) 85, 190, 875
BciT130I CCWGG 1 cut(s) 1352
BcoDI GTCTC 2 cut(s) 104, 1007
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 1122
BfrI CTTAAG 1 cut(s) 1094
BfuAI ACCTGC 2 cut(s) 308, 968
BisI GCNGC 5 cut(s) 25, 168, 1331, 1334, 1337
BlsI GCNGC 5 cut(s) 26, 169, 1332, 1335, 1338
Bme1390I CCNGG 1 cut(s) 1352
Bme18I GGWCC 2 cut(s) 1039, 1324
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 1039, 1324
BmiI GGNNCC 4 cut(s) 570, 644, 940, 1380
BmrFI CCNGG 1 cut(s) 1352
BmsI GCATC 3 cut(s) 504, 878, 1571
BpiI GAAGAC 1 cut(s) 1304
BplI GAGNNNNNCTC 4 cut(s) 97, 129, 640, 672
BpmI CTGGAG 1 cut(s) 1373
Bpu14I TTCGAA 2 cut(s) 149, 1476
BpuEI CTTGAG 1 cut(s) 1361
BsaBI GATNNNNATC 2 cut(s) 60, 573
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 778
Bse1I ACTGG 1 cut(s) 952
Bse3DI GCAATG 3 cut(s) 526, 658, 972
Bse8I GATNNNNATC 2 cut(s) 60, 573
BseBI CCWGG 1 cut(s) 1352
BseGI GGATG 7 cut(s) 131, 205, 240, 262, 886, 893, 1434
BseJI GATNNNNATC 2 cut(s) 60, 573
BseLI CCNNNNNNNGG 2 cut(s) 662, 778
BseMI GCAATG 3 cut(s) 526, 658, 972
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 5 cut(s) 65, 95, 347, 1025, 1415
BseSI GKGCMC 2 cut(s) 647, 943
BseXI GCAGC 5 cut(s) 36, 154, 1342, 1345, 1348
BseYI CCCAGC 2 cut(s) 1179, 1498
BsgI GTGCAG 3 cut(s) 153, 206, 972
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 2 cut(s) 642, 938
BsiHKCI CYCGRG 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 662, 778
BsmAI GTCTC 2 cut(s) 104, 1007
BsmI GAATGC 1 cut(s) 1484
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 646
Bsp119I TTCGAA 2 cut(s) 149, 1476
Bsp1286I GDGCHC 2 cut(s) 647, 943
Bsp143I GATC 5 cut(s) 568, 955, 1194, 1211, 1492
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 663
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 4 cut(s) 570, 644, 940, 1380
BspMI ACCTGC 2 cut(s) 308, 968
BspPI GGATC 2 cut(s) 563, 576
BspT104I TTCGAA 2 cut(s) 149, 1476
BspT107I GGYRCC 2 cut(s) 642, 938
BspTI CTTAAG 1 cut(s) 1094
BsrDI GCAATG 3 cut(s) 526, 658, 972
BsrI ACTGG 1 cut(s) 952
BssMI GATC 5 cut(s) 568, 955, 1194, 1211, 1492
Bst2UI CCWGG 1 cut(s) 1352
Bst4CI ACNGT 7 cut(s) 412, 431, 596, 820, 1070, 1123, 1577
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 2 cut(s) 501, 1190
BstBI TTCGAA 2 cut(s) 149, 1476
BstC8I GCNNGC 2 cut(s) 273, 1348
BstDEI CTNAG 2 cut(s) 138, 360
BstEII GGTNACC 1 cut(s) 1262
BstF5I GGATG 7 cut(s) 131, 205, 240, 262, 886, 893, 1434
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 5 cut(s) 571, 958, 1197, 1214, 1495
BstMAI GTCTC 2 cut(s) 104, 1007
BstMBI GATC 5 cut(s) 568, 955, 1194, 1211, 1492
BstMWI GCNNNNNNNGC 4 cut(s) 501, 1190, 1336, 1366
BstNI CCWGG 1 cut(s) 1352
BstNSI RCATGY 2 cut(s) 717, 1258
BstPI GGTNACC 1 cut(s) 1262
BstSCI CCNGG 1 cut(s) 1350
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 2 cut(s) 647, 943
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 5 cut(s) 36, 154, 1342, 1345, 1348
BstV2I GAAGAC 1 cut(s) 1304
BstX2I RGATCY 1 cut(s) 568
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 7 cut(s) 131, 205, 240, 262, 886, 893, 1434
BtsIMutI CAGTG 3 cut(s) 209, 427, 565
BtuMI TCGCGA 1 cut(s) 66
BveI ACCTGC 2 cut(s) 308, 968
Cac8I GCNNGC 2 cut(s) 273, 1348
CciI TCATGA 1 cut(s) 982
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 2 cut(s) 1039, 1324
Csp6I GTAC 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 416, 451
CviAII CATG 9 cut(s) 224, 338, 382, 505, 714, 768, 963, 983, 1255
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 138, 360
DpnI GATC 5 cut(s) 570, 957, 1196, 1213, 1494
DpnII GATC 5 cut(s) 568, 955, 1194, 1211, 1492
DraI TTTAAA 1 cut(s) 1419
Eco47I GGWCC 2 cut(s) 1039, 1324
Eco57I CTGAAG 1 cut(s) 1133
Eco88I CYCGRG 1 cut(s) 646
Eco91I GGTNACC 1 cut(s) 1262
EcoO109I RGGNCCY 1 cut(s) 1039
EcoO65I GGTNACC 1 cut(s) 1262
EcoRII CCWGG 1 cut(s) 1350
EcoT22I ATGCAT 2 cut(s) 506, 1484
FaeI CATG 9 cut(s) 227, 341, 385, 508, 717, 771, 966, 986, 1258
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FatI CATG 9 cut(s) 223, 337, 381, 504, 713, 767, 962, 982, 1254
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 5 cut(s) 25, 168, 1331, 1334, 1337
FokI GGATG 7 cut(s) 118, 212, 227, 269, 893, 900, 1441
Fsp4HI GCNGC 5 cut(s) 25, 168, 1331, 1334, 1337
FspBI CTAG 1 cut(s) 896
GlaI GCGC 1 cut(s) 494
GluI GCNGC 5 cut(s) 25, 168, 1331, 1334, 1337
GsaI CCCAGC 2 cut(s) 1183, 1502
GsuI CTGGAG 1 cut(s) 1373
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 495
Hin1II CATG 9 cut(s) 227, 341, 385, 508, 717, 771, 966, 986, 1258
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 3 cut(s) 262, 838, 874
HindII GTYRAC 3 cut(s) 262, 838, 874
HindIII AAGCTT 2 cut(s) 1097, 1358
HpaI GTTAAC 1 cut(s) 874
HphI GGTGA 2 cut(s) 205, 1274
Hpy166II GTNNAC 6 cut(s) 262, 838, 874, 914, 992, 1522
Hpy188I TCNGA 7 cut(s) 361, 548, 1291, 1399, 1546, 1567, 1592
Hpy188III TCNNGA 5 cut(s) 65, 605, 983, 1412, 1584
Hpy8I GTNNAC 6 cut(s) 262, 838, 874, 914, 992, 1522
HpyAV CCTTC 4 cut(s) 29, 289, 1030, 1108
HpyCH4III ACNGT 7 cut(s) 412, 431, 596, 820, 1070, 1123, 1577
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 4 cut(s) 501, 1190, 1336, 1366
HpyF3I CTNAG 2 cut(s) 138, 360
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 9 cut(s) 227, 341, 385, 508, 717, 771, 966, 986, 1258
HspAI GCGC 1 cut(s) 493
KspAI GTTAAC 1 cut(s) 874
Kzo9I GATC 5 cut(s) 568, 955, 1194, 1211, 1492
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 5 cut(s) 36, 154, 1342, 1345, 1348
LweI GCATC 3 cut(s) 504, 878, 1571
MaeI CTAG 1 cut(s) 896
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 6 cut(s) 300, 322, 406, 437, 898, 1262
MalI GATC 5 cut(s) 570, 957, 1196, 1213, 1494
MboI GATC 5 cut(s) 568, 955, 1194, 1211, 1492
MboII GAAGA 9 cut(s) 348, 398, 593, 698, 805, 1016, 1160, 1309, 1434
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 2 cut(s) 647, 943
MlyI GAGTC 2 cut(s) 106, 1197
MmeI TCCRAC 1 cut(s) 428
Mph1103I ATGCAT 2 cut(s) 506, 1484
MroXI GAANNNNTTC 2 cut(s) 390, 1531
MseI TTAA 6 cut(s) 695, 822, 873, 1095, 1418, 1572
MslI CAYNNNNRTG 3 cut(s) 413, 514, 987
MspCI CTTAAG 1 cut(s) 1094
MspR9I CCNGG 1 cut(s) 1352
Mva1269I GAATGC 1 cut(s) 1484
MvaI CCWGG 1 cut(s) 1352
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 501, 1190, 1336, 1366
NdeII GATC 5 cut(s) 568, 955, 1194, 1211, 1492
NlaIII CATG 9 cut(s) 227, 341, 385, 508, 717, 771, 966, 986, 1258
NlaIV GGNNCC 4 cut(s) 570, 644, 940, 1380
NmuCI GTSAC 3 cut(s) 322, 406, 1262
NruI TCGCGA 1 cut(s) 66
NsiI ATGCAT 2 cut(s) 506, 1484
NspI RCATGY 2 cut(s) 717, 1258
NspV TTCGAA 2 cut(s) 149, 1476
OliI CACNNNNGTG 1 cut(s) 514
PagI TCATGA 1 cut(s) 982
PaqCI CACCTGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 1254
PctI GAATGC 1 cut(s) 1484
PdmI GAANNNNTTC 2 cut(s) 390, 1531
PfeI GAWTC 8 cut(s) 155, 608, 809, 968, 996, 1088, 1435, 1587
PkrI GCNGC 5 cut(s) 26, 169, 1332, 1335, 1338
PleI GAGTC 2 cut(s) 106, 1197
PpsI GAGTC 2 cut(s) 106, 1197
PpuMI RGGWCCY 1 cut(s) 1039
PscI ACATGT 1 cut(s) 1254
PshBI ATTAAT 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 1350
PspEI GGTNACC 1 cut(s) 1262
PspFI CCCAGC 2 cut(s) 1179, 1498
PspGI CCWGG 1 cut(s) 1350
PspN4I GGNNCC 4 cut(s) 570, 644, 940, 1380
PspPI GGNCC 2 cut(s) 1039, 1324
PspPPI RGGWCCY 1 cut(s) 1039
PsuI RGATCY 1 cut(s) 568
RruI TCGCGA 1 cut(s) 66
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 3 cut(s) 413, 514, 987
SalI GTCGAC 1 cut(s) 260
SaqAI TTAA 6 cut(s) 695, 822, 873, 1095, 1418, 1572
SatI GCNGC 5 cut(s) 25, 168, 1331, 1334, 1337
Sau3AI GATC 5 cut(s) 568, 955, 1194, 1211, 1492
Sau96I GGNCC 2 cut(s) 1039, 1324
SchI GAGTC 2 cut(s) 106, 1197
ScrFI CCNGG 1 cut(s) 1352
SduI GDGCHC 2 cut(s) 647, 943
SfaNI GCATC 3 cut(s) 504, 878, 1571
SfcI CTRYAG 1 cut(s) 1122
SfuI TTCGAA 2 cut(s) 149, 1476
SinI GGWCC 2 cut(s) 1039, 1324
SmiMI CAYNNNNRTG 3 cut(s) 413, 514, 987
SmlI CTYRAG 2 cut(s) 1094, 1340
SmoI CTYRAG 2 cut(s) 1094, 1340
SsiI CCGC 1 cut(s) 663
SspI AATATT 1 cut(s) 1142
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 1350
TaaI ACNGT 7 cut(s) 412, 431, 596, 820, 1070, 1123, 1577
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 149, 261, 699, 1476
TfiI GAWTC 8 cut(s) 155, 608, 809, 968, 996, 1088, 1435, 1587
Tru1I TTAA 6 cut(s) 695, 822, 873, 1095, 1418, 1572
Tru9I TTAA 6 cut(s) 695, 822, 873, 1095, 1418, 1572
TscAI CASTG 3 cut(s) 216, 434, 565
TseFI GTSAC 3 cut(s) 322, 406, 1262
TseI GCWGC 5 cut(s) 24, 167, 1330, 1333, 1336
Tsp45I GTSAC 3 cut(s) 322, 406, 1262
TspDTI ATGAA 7 cut(s) 120, 451, 549, 705, 756, 822, 1448
TspGWI ACGGA 1 cut(s) 1563
TspRI CASTG 3 cut(s) 216, 434, 565
Vha464I CTTAAG 1 cut(s) 1094
VpaK11BI GGWCC 2 cut(s) 1039, 1324
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 1 cut(s) 390
XceI RCATGY 2 cut(s) 717, 1258
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 390, 1531
XspI CTAG 1 cut(s) 896
Zsp2I ATGCAT 2 cut(s) 506, 1484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.