pycom05g06180

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
8078972 .. 8082715
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06180.2

Sequence Viewer

Length: 1749 bp
ATGGAGGATTGCTTGGGCAGCGACGAGGAGTACTATTACTCCGATCAGGATTCTCTCGACGTCATCGAGAATGAAGACTCTGATCTTCCGTGGATTCTCCCCAAGGGGCCCACTACTAAGGTGATCACCAAAGAATCTCTTTTGACCGCACAGAAGGAGGATTTGCGCAGGGTGATGGACTTGCTATTCCTTAGGGAGCACCATGCCAGGACTTTACTTATTCATCATCGCTGGGATGTTGAGAAGCTTTTTGCGGTGTATGTAGAGAAGGGAAAATCTTGGTTGTTTGCTGAAGCAGGTGTAACTGTTGTTGATCATCAAGATCTTGACCCATCGCCCCCTAATTCTCCAGTAATGTGTGCTATTTGTATGGAAGATGTGCCTAGTAATGAGACGACAAAAATGGATTGTGGACATTGCTTTTGCAACAGTTGCTGGACAGAGCATTTCGTTGTAAAGATAAATGAGGGTCAAAGTAAGCGCATTAGGTGCATGGCTCACAAATGCAATGCCATTTGTGATGAAGCTGTTGTCAGAAATCTAGTCAGTAAGAGGCATCCCCAGCTTGCTGAAAAATTTGACCGTTTTCTTCTTGAGTCATATATTGAGGACAATAAAAGGGTTAAGTGGTGCCCGAGCACTCCTCATTGTGGGAATGCAATACGCGTGGAGGATGATCAGTTTTGTGAGATAGAATGTTCTTGTGGTCTGCAATTTTGTTTCAGTTGTTTATTACAAGCTCATTCACCTTGTTCATGTTTAATGTGGGAGCTTTGGGCCAAGAAGTGCCATGATGAATCAGAGACAGTTAATTGGATCACAGTTCATACAAAACCTTGTCCCAAATGTCACAAACCTGTGGAGAAGAATGGTGGCTGCAACCTTGTGAGCTGTATCTGTGGACAAGCATTTTGTTGGCTATGTGGTGGAGCGACTGGTCGAGACCATACATGGTCAAGTATTGCAGGTCATAGCTGTGGTCGGTACAAAGAAGACAAAGAAAAAAATGCTGAGCGGGCAAAGCGGGATCTTTATCGGTATATGCACTATCATAACCGTTACAAAGCTCATACTGATTCCTTTAAGCTTGAAAGTAACTTGAAGGAGAGTATACAAAAGAAGGTGTCAATTTCAGAGGAGAAGGACTCGAATCTCAGAGATTTCAGCTGGGTAAACAATGGACTCTCCAGACTTTTCAGATCAAGGAGGGTTCTTTCATATTCGTACCCATTTGCTTTCTATATGTTTGGAGAAGAGCTGTTTAAGGATGAGATGACAGAGGAGGAAAGGGAAATAAAACAAAATTTGTTTGAGGACCAGCAGCAGCAACTTGAGGAAAATGTTGAGAAATTATCCAAGTTTTTGGAGTCACCTTTTGATCAATATAATGAGAATGAAGTTATGGATGTAAGGATGCAAGTGATCAATCTCTCAGCAATCACGGATACCCTCTGTCAGAAAATGTATGACTGTATTGAGACTGATTTATTGGGCTCTCTACAGCTTGGTATCCATAACATAGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCATCAGAACTTCCTGTTAGTTGGGTCAATAATGCCAATAATGCTGATAAAGATCCAGCATTGCATTGTGGTTATATATTTGATTATGGGGATCGACGGAACTGGAACAACCTTCAGGTTTTGGAAGTTCAGATGAGAGTGGATGCTCCTCTCGGAAGCGTGCTAGGAAGGATGGTCTTGGAGGTGGTTTTGATCTAA

Protein Analysis

583

Amino Acids

67.29

Weight (kDa)

5.47

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 287
AatII GACGTC 1 cut(s) 63
Acc16I TGCGCA 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 287, 956
AccB1I GGYRCC 1 cut(s) 630
AccBSI CCGCTC 1 cut(s) 1015
AccI GTMKAC 1 cut(s) 1111
AccII CGCG 1 cut(s) 666
AciI CCGC 4 cut(s) 147, 254, 1015, 1024
AclWI GGATC 4 cut(s) 824, 1035, 1598, 1650
AcsI RAATTY 2 cut(s) 575, 1303
AcuI CTGAAG 2 cut(s) 312, 1649
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 32, 986, 1226
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 2 cut(s) 1091, 1102
AjnI CCWGG 1 cut(s) 206
Alw21I GWGCWC 2 cut(s) 201, 641
Alw26I GTCTC 4 cut(s) 386, 797, 936, 1472
AlwI GGATC 4 cut(s) 824, 1035, 1598, 1650
AlwNI CAGNNNCTG 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 2 cut(s) 107, 777
ApaI GGGCCC 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 18, 876, 1321, 1324
ApoI RAATTY 2 cut(s) 575, 1303
ArsI GACNNNNNNTTYG 4 cut(s) 405, 437, 894, 926
AspLEI GCGC 2 cut(s) 168, 483
AspS9I GGNCC 4 cut(s) 107, 108, 777, 1315
AsuHPI GGTGA 5 cut(s) 118, 133, 184, 738, 1362
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 1 cut(s) 1315
AxyI CCTNAGG 1 cut(s) 191
BaeGI GKGCMC 2 cut(s) 111, 635
BanI GGYRCC 1 cut(s) 630
BanII GRGCYC 2 cut(s) 111, 1496
BbsI GAAGAC 2 cut(s) 81, 999
Bbv12I GWGCWC 2 cut(s) 201, 641
BbvI GCAGC 4 cut(s) 30, 863, 1333, 1336
BccI CCATC 3 cut(s) 169, 340, 1717
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 2 cut(s) 1438, 1520
BclI TGATCA 5 cut(s) 123, 313, 676, 1378, 1422
BcoDI GTCTC 4 cut(s) 386, 797, 936, 1472
BfaI CTAG 3 cut(s) 384, 542, 1715
BfmI CTRYAG 1 cut(s) 1499
BfuAI ACCTGC 2 cut(s) 287, 956
BfuI GTATCC 2 cut(s) 1438, 1520
BglII AGATCT 1 cut(s) 322
BisI GCNGC 4 cut(s) 19, 877, 1322, 1325
BlpI GCTNAGC 1 cut(s) 1011
BlsI GCNGC 4 cut(s) 20, 878, 1323, 1326
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 1315
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 4 cut(s) 107, 108, 777, 1315
BmiI GGNNCC 3 cut(s) 108, 109, 632
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 4 cut(s) 565, 1404, 1562, 1684
BpiI GAAGAC 2 cut(s) 81, 999
BplI GAGNNNNNCTC 4 cut(s) 628, 660, 1130, 1162
BpmI CTGGAG 2 cut(s) 333, 1171
Bpu1102I GCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 2 cut(s) 614, 1352
BsaBI GATNNNNATC 2 cut(s) 1032, 1602
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 936
BsaJI CCNNGG 2 cut(s) 89, 102
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 3 cut(s) 350, 940, 1658
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 3 cut(s) 415, 514, 1610
Bse8I GATNNNNATC 2 cut(s) 1032, 1602
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 89, 102
BseGI GGATG 8 cut(s) 241, 556, 679, 1273, 1411, 1419, 1699, 1728
BseJI GATNNNNATC 2 cut(s) 1032, 1602
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 3 cut(s) 415, 514, 1610
BseMII CTCAG 3 cut(s) 1002, 1168, 1446
BseNI ACTGG 3 cut(s) 350, 940, 1658
BseRI GAGGAG 5 cut(s) 41, 633, 1151, 1295, 1689
BseSI GKGCMC 2 cut(s) 111, 635
BseXI GCAGC 4 cut(s) 30, 863, 1333, 1336
BseYI CCCAGC 3 cut(s) 231, 561, 1167
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 2 cut(s) 109, 779
BshNI GGYRCC 1 cut(s) 630
BsiHKAI GWGCWC 2 cut(s) 201, 641
BsiHKCI CYCGRG 1 cut(s) 634
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 4 cut(s) 386, 797, 936, 1472
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 109, 779
Bso31I GGTCTC 1 cut(s) 936
BsoBI CYCGRG 1 cut(s) 634
Bsp120I GGGCCC 1 cut(s) 107
Bsp1286I GDGCHC 5 cut(s) 111, 201, 635, 641, 1496
Bsp1720I GCTNAGC 1 cut(s) 1011
BspACI CCGC 4 cut(s) 147, 254, 1015, 1024
BspANI GGCC 2 cut(s) 109, 779
BspCNI CTCAG 3 cut(s) 1003, 1167, 1445
BspFNI CGCG 1 cut(s) 666
BspLI GGNNCC 3 cut(s) 108, 109, 632
BspMI ACCTGC 2 cut(s) 287, 956
BspPI GGATC 4 cut(s) 824, 1035, 1598, 1650
BspQI GCTCTTC 1 cut(s) 1248
BspT107I GGYRCC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 936
BsrBI CCGCTC 1 cut(s) 1015
BsrDI GCAATG 3 cut(s) 415, 514, 1610
BsrI ACTGG 3 cut(s) 350, 940, 1658
BssECI CCNNGG 2 cut(s) 89, 102
BssNAI GTATAC 1 cut(s) 1112
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 1112
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 7 cut(s) 307, 431, 584, 808, 823, 1058, 1472
Bst6I CTCTTC 1 cut(s) 1248
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 2 cut(s) 432, 489
BstC8I GCNNGC 3 cut(s) 567, 1017, 1712
BstDEI CTNAG 5 cut(s) 117, 191, 1011, 1154, 1432
BstDSI CCRYGG 1 cut(s) 89
BstF5I GGATG 8 cut(s) 241, 556, 679, 1273, 1411, 1419, 1699, 1728
BstFNI CGCG 1 cut(s) 666
BstHHI GCGC 2 cut(s) 168, 483
BstMAI GTCTC 4 cut(s) 386, 797, 936, 1472
BstMWI GCNNNNNNNGC 7 cut(s) 18, 432, 489, 562, 1016, 1021, 1592
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 1499
BstSLI GKGCMC 2 cut(s) 111, 635
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 4 cut(s) 30, 863, 1333, 1336
BstV2I GAAGAC 2 cut(s) 81, 999
BstX2I RGATCY 3 cut(s) 322, 1027, 1603
BstXI CCANNNNNNTGG 1 cut(s) 1363
BstYI RGATCY 3 cut(s) 322, 1027, 1603
BstZ17I GTATAC 1 cut(s) 1112
Bsu36I CCTNAGG 1 cut(s) 191
BsuI GTATCC 2 cut(s) 1438, 1520
BsuRI GGCC 2 cut(s) 109, 779
BtgI CCRYGG 1 cut(s) 89
BtgZI GCGATG 2 cut(s) 212, 318
BtsCI GGATG 8 cut(s) 241, 556, 679, 1273, 1411, 1419, 1699, 1728
BveI ACCTGC 2 cut(s) 287, 956
Cac8I GCNNGC 3 cut(s) 567, 1017, 1712
CaiI CAGNNNCTG 1 cut(s) 435
CfoI GCGC 2 cut(s) 168, 483
Cfr13I GGNCC 4 cut(s) 107, 108, 777, 1315
Csp6I GTAC 3 cut(s) 31, 985, 1225
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 5 cut(s) 203, 493, 756, 791, 951
CviQI GTAC 3 cut(s) 31, 985, 1225
DdeI CTNAG 5 cut(s) 117, 191, 1011, 1154, 1432
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 111, 1496
Eco31I GGTCTC 1 cut(s) 936
Eco47I GGWCC 1 cut(s) 1315
Eco57I CTGAAG 2 cut(s) 312, 1649
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 111, 1496
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 5 cut(s) 206, 496, 759, 794, 954
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 825
FatI CATG 5 cut(s) 202, 492, 755, 790, 950
FauI CCCGC 2 cut(s) 1008, 1017
FbaI TGATCA 5 cut(s) 123, 313, 676, 1378, 1422
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 4 cut(s) 19, 877, 1322, 1325
FokI GGATG 8 cut(s) 248, 543, 686, 1280, 1418, 1426, 1706, 1735
FriOI GRGCYC 2 cut(s) 111, 1496
Fsp4HI GCNGC 4 cut(s) 19, 877, 1322, 1325
FspBI CTAG 3 cut(s) 384, 542, 1715
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 2 cut(s) 167, 482
GluI GCNGC 4 cut(s) 19, 877, 1322, 1325
GsaI CCCAGC 3 cut(s) 235, 565, 1171
GsuI CTGGAG 2 cut(s) 333, 1171
HaeIII GGCC 2 cut(s) 109, 779
HhaI GCGC 2 cut(s) 168, 483
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 5 cut(s) 206, 496, 759, 794, 954
Hin6I GCGC 2 cut(s) 166, 481
HinP1I GCGC 2 cut(s) 166, 481
HindIII AAGCTT 2 cut(s) 245, 1085
HphI GGTGA 5 cut(s) 118, 133, 184, 738, 1362
Hpy166II GTNNAC 4 cut(s) 413, 902, 1112, 1174
Hpy188III TCNNGA 8 cut(s) 47, 56, 67, 320, 326, 593, 941, 1188
Hpy8I GTNNAC 4 cut(s) 413, 902, 1112, 1174
Hpy99I CGWCG 3 cut(s) 26, 62, 1650
HpyAV CCTTC 9 cut(s) 148, 262, 1096, 1114, 1135, 1531, 1543, 1673, 1713
HpyCH4III ACNGT 7 cut(s) 307, 431, 584, 808, 823, 1058, 1472
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 432, 489, 562, 1016, 1021, 1592
HpyF3I CTNAG 5 cut(s) 117, 191, 1011, 1154, 1432
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 5 cut(s) 206, 496, 759, 794, 954
HspAI GCGC 2 cut(s) 166, 481
Ksp22I TGATCA 5 cut(s) 123, 313, 676, 1378, 1422
LguI GCTCTTC 1 cut(s) 1248
LmnI GCTCC 5 cut(s) 196, 769, 929, 1528, 1702
Lsp1109I GCAGC 4 cut(s) 30, 863, 1333, 1336
LweI GCATC 4 cut(s) 565, 1404, 1562, 1684
MaeI CTAG 3 cut(s) 384, 542, 1715
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 5 cut(s) 301, 848, 1058, 1094, 1368
MbiI CCGCTC 1 cut(s) 1015
MboII GAAGA 7 cut(s) 77, 86, 386, 581, 877, 1004, 1265
MflI RGATCY 3 cut(s) 322, 1027, 1603
MhlI GDGCHC 5 cut(s) 111, 201, 635, 641, 1496
MluCI AATT 7 cut(s) 343, 575, 713, 811, 1128, 1303, 1349
MluI ACGCGT 1 cut(s) 664
MlyI GAGTC 5 cut(s) 71, 605, 1139, 1176, 1376
MseI TTAA 5 cut(s) 624, 761, 810, 1083, 1263
MslI CAYNNNNRTG 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 1167
MspR9I CCNGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 666
MwoI GCNNNNNNNGC 7 cut(s) 18, 432, 489, 562, 1016, 1021, 1592
NlaIII CATG 5 cut(s) 206, 496, 759, 794, 954
NlaIV GGNNCC 3 cut(s) 108, 109, 632
NmuCI GTSAC 2 cut(s) 848, 1368
NsbI TGCGCA 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 6 cut(s) 50, 94, 134, 797, 1076, 1150
PkrI GCNGC 4 cut(s) 20, 878, 1323, 1326
PleI GAGTC 5 cut(s) 71, 604, 1139, 1176, 1375
PpsI GAGTC 5 cut(s) 71, 604, 1139, 1176, 1375
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 3 cut(s) 231, 561, 1167
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 108, 109, 632
PspOMI GGGCCC 1 cut(s) 107
PspPI GGNCC 4 cut(s) 107, 108, 777, 1315
PstNI CAGNNNCTG 1 cut(s) 435
PsuI RGATCY 3 cut(s) 322, 1027, 1603
PvuII CAGCTG 1 cut(s) 1167
RsaI GTAC 3 cut(s) 32, 986, 1226
RsaNI GTAC 3 cut(s) 31, 985, 1225
RseI CAYNNNNRTG 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 1248
SaqAI TTAA 5 cut(s) 624, 761, 810, 1083, 1263
SatI GCNGC 4 cut(s) 19, 877, 1322, 1325
Sau96I GGNCC 4 cut(s) 107, 108, 777, 1315
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 5 cut(s) 71, 605, 1139, 1176, 1376
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 5 cut(s) 111, 201, 635, 641, 1496
SfaNI GCATC 4 cut(s) 565, 1404, 1562, 1684
SfcI CTRYAG 1 cut(s) 1499
SinI GGWCC 1 cut(s) 1315
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 2 cut(s) 593, 1331
SmoI CTYRAG 2 cut(s) 593, 1331
Sse9I AATT 7 cut(s) 343, 575, 713, 811, 1128, 1303, 1349
SsiI CCGC 4 cut(s) 147, 254, 1015, 1024
SspMI CTAG 3 cut(s) 384, 542, 1715
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 7 cut(s) 307, 431, 584, 808, 823, 1058, 1472
TaiI ACGT 1 cut(s) 63
TaqI TCGA 6 cut(s) 57, 66, 940, 1148, 1535, 1645
TasI AATT 7 cut(s) 343, 575, 713, 811, 1128, 1303, 1349
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 6 cut(s) 50, 94, 134, 797, 1076, 1150
Tru1I TTAA 5 cut(s) 624, 761, 810, 1083, 1263
Tru9I TTAA 5 cut(s) 624, 761, 810, 1083, 1263
TseFI GTSAC 2 cut(s) 848, 1368
TseI GCWGC 4 cut(s) 18, 876, 1321, 1324
Tsp45I GTSAC 2 cut(s) 848, 1368
TspDTI ATGAA 8 cut(s) 87, 212, 537, 744, 810, 815, 1206, 1410
TspGWI ACGGA 3 cut(s) 78, 1457, 1663
VpaK11BI GGWCC 1 cut(s) 1315
XapI RAATTY 2 cut(s) 575, 1303
XmiI GTMKAC 1 cut(s) 1111
XspI CTAG 3 cut(s) 384, 542, 1715
ZraI GACGTC 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.