E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 287 |
| AatII | GACGTC | 1 cut(s) | 63 |
| Acc16I | TGCGCA | 1 cut(s) | 167 |
| Acc36I | ACCTGC | 2 cut(s) | 287, 956 |
| AccB1I | GGYRCC | 1 cut(s) | 630 |
| AccBSI | CCGCTC | 1 cut(s) | 1015 |
| AccI | GTMKAC | 1 cut(s) | 1111 |
| AccII | CGCG | 1 cut(s) | 666 |
| AciI | CCGC | 4 cut(s) | 147, 254, 1015, 1024 |
| AclWI | GGATC | 4 cut(s) | 824, 1035, 1598, 1650 |
| AcsI | RAATTY | 2 cut(s) | 575, 1303 |
| AcuI | CTGAAG | 2 cut(s) | 312, 1649 |
| AcyI | GRCGYC | 1 cut(s) | 60 |
| AfaI | GTAC | 3 cut(s) | 32, 986, 1226 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 650 |
| AflIII | ACRYGT | 1 cut(s) | 664 |
| AgsI | TTSAA | 2 cut(s) | 1091, 1102 |
| AjnI | CCWGG | 1 cut(s) | 206 |
| Alw21I | GWGCWC | 2 cut(s) | 201, 641 |
| Alw26I | GTCTC | 4 cut(s) | 386, 797, 936, 1472 |
| AlwI | GGATC | 4 cut(s) | 824, 1035, 1598, 1650 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 435 |
| Ama87I | CYCGRG | 1 cut(s) | 634 |
| AoxI | GGCC | 2 cut(s) | 107, 777 |
| ApaI | GGGCCC | 1 cut(s) | 111 |
| ApeKI | GCWGC | 4 cut(s) | 18, 876, 1321, 1324 |
| ApoI | RAATTY | 2 cut(s) | 575, 1303 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 405, 437, 894, 926 |
| AspLEI | GCGC | 2 cut(s) | 168, 483 |
| AspS9I | GGNCC | 4 cut(s) | 107, 108, 777, 1315 |
| AsuHPI | GGTGA | 5 cut(s) | 118, 133, 184, 738, 1362 |
| AvaI | CYCGRG | 1 cut(s) | 634 |
| AvaII | GGWCC | 1 cut(s) | 1315 |
| AxyI | CCTNAGG | 1 cut(s) | 191 |
| BaeGI | GKGCMC | 2 cut(s) | 111, 635 |
| BanI | GGYRCC | 1 cut(s) | 630 |
| BanII | GRGCYC | 2 cut(s) | 111, 1496 |
| BbsI | GAAGAC | 2 cut(s) | 81, 999 |
| Bbv12I | GWGCWC | 2 cut(s) | 201, 641 |
| BbvI | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BccI | CCATC | 3 cut(s) | 169, 340, 1717 |
| BciT130I | CCWGG | 1 cut(s) | 208 |
| BciVI | GTATCC | 2 cut(s) | 1438, 1520 |
| BclI | TGATCA | 5 cut(s) | 123, 313, 676, 1378, 1422 |
| BcoDI | GTCTC | 4 cut(s) | 386, 797, 936, 1472 |
| BfaI | CTAG | 3 cut(s) | 384, 542, 1715 |
| BfmI | CTRYAG | 1 cut(s) | 1499 |
| BfuAI | ACCTGC | 2 cut(s) | 287, 956 |
| BfuI | GTATCC | 2 cut(s) | 1438, 1520 |
| BglII | AGATCT | 1 cut(s) | 322 |
| BisI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| BlpI | GCTNAGC | 1 cut(s) | 1011 |
| BlsI | GCNGC | 4 cut(s) | 20, 878, 1323, 1326 |
| BmcAI | AGTACT | 1 cut(s) | 32 |
| Bme1390I | CCNGG | 1 cut(s) | 208 |
| Bme18I | GGWCC | 1 cut(s) | 1315 |
| BmeT110I | CYCGRG | 1 cut(s) | 634 |
| BmgT120I | GGNCC | 4 cut(s) | 107, 108, 777, 1315 |
| BmiI | GGNNCC | 3 cut(s) | 108, 109, 632 |
| BmrFI | CCNGG | 1 cut(s) | 208 |
| BmsI | GCATC | 4 cut(s) | 565, 1404, 1562, 1684 |
| BpiI | GAAGAC | 2 cut(s) | 81, 999 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 628, 660, 1130, 1162 |
| BpmI | CTGGAG | 2 cut(s) | 333, 1171 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 2 cut(s) | 614, 1352 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1032, 1602 |
| BsaHI | GRCGYC | 1 cut(s) | 60 |
| BsaI | GGTCTC | 1 cut(s) | 936 |
| BsaJI | CCNNGG | 2 cut(s) | 89, 102 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 650 |
| Bse1I | ACTGG | 3 cut(s) | 350, 940, 1658 |
| Bse21I | CCTNAGG | 1 cut(s) | 191 |
| Bse3DI | GCAATG | 3 cut(s) | 415, 514, 1610 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1032, 1602 |
| BseBI | CCWGG | 1 cut(s) | 208 |
| BseDI | CCNNGG | 2 cut(s) | 89, 102 |
| BseGI | GGATG | 8 cut(s) | 241, 556, 679, 1273, 1411, 1419, 1699, 1728 |
| BseJI | GATNNNNATC | 2 cut(s) | 1032, 1602 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BseMI | GCAATG | 3 cut(s) | 415, 514, 1610 |
| BseMII | CTCAG | 3 cut(s) | 1002, 1168, 1446 |
| BseNI | ACTGG | 3 cut(s) | 350, 940, 1658 |
| BseRI | GAGGAG | 5 cut(s) | 41, 633, 1151, 1295, 1689 |
| BseSI | GKGCMC | 2 cut(s) | 111, 635 |
| BseXI | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BseYI | CCCAGC | 3 cut(s) | 231, 561, 1167 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| BshFI | GGCC | 2 cut(s) | 109, 779 |
| BshNI | GGYRCC | 1 cut(s) | 630 |
| BsiHKAI | GWGCWC | 2 cut(s) | 201, 641 |
| BsiHKCI | CYCGRG | 1 cut(s) | 634 |
| BslFI | GGGAC | 1 cut(s) | 825 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 650 |
| BsmAI | GTCTC | 4 cut(s) | 386, 797, 936, 1472 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 1 cut(s) | 825 |
| BsmI | GAATGC | 1 cut(s) | 661 |
| BsnI | GGCC | 2 cut(s) | 109, 779 |
| Bso31I | GGTCTC | 1 cut(s) | 936 |
| BsoBI | CYCGRG | 1 cut(s) | 634 |
| Bsp120I | GGGCCC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 5 cut(s) | 111, 201, 635, 641, 1496 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1011 |
| BspACI | CCGC | 4 cut(s) | 147, 254, 1015, 1024 |
| BspANI | GGCC | 2 cut(s) | 109, 779 |
| BspCNI | CTCAG | 3 cut(s) | 1003, 1167, 1445 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspLI | GGNNCC | 3 cut(s) | 108, 109, 632 |
| BspMI | ACCTGC | 2 cut(s) | 287, 956 |
| BspPI | GGATC | 4 cut(s) | 824, 1035, 1598, 1650 |
| BspQI | GCTCTTC | 1 cut(s) | 1248 |
| BspT107I | GGYRCC | 1 cut(s) | 630 |
| BspTNI | GGTCTC | 1 cut(s) | 936 |
| BsrBI | CCGCTC | 1 cut(s) | 1015 |
| BsrDI | GCAATG | 3 cut(s) | 415, 514, 1610 |
| BsrI | ACTGG | 3 cut(s) | 350, 940, 1658 |
| BssECI | CCNNGG | 2 cut(s) | 89, 102 |
| BssNAI | GTATAC | 1 cut(s) | 1112 |
| BssNI | GRCGYC | 1 cut(s) | 60 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst1107I | GTATAC | 1 cut(s) | 1112 |
| Bst2UI | CCWGG | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 7 cut(s) | 307, 431, 584, 808, 823, 1058, 1472 |
| Bst6I | CTCTTC | 1 cut(s) | 1248 |
| BstACI | GRCGYC | 1 cut(s) | 60 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 432, 489 |
| BstC8I | GCNNGC | 3 cut(s) | 567, 1017, 1712 |
| BstDEI | CTNAG | 5 cut(s) | 117, 191, 1011, 1154, 1432 |
| BstDSI | CCRYGG | 1 cut(s) | 89 |
| BstF5I | GGATG | 8 cut(s) | 241, 556, 679, 1273, 1411, 1419, 1699, 1728 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstHHI | GCGC | 2 cut(s) | 168, 483 |
| BstMAI | GTCTC | 4 cut(s) | 386, 797, 936, 1472 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 18, 432, 489, 562, 1016, 1021, 1592 |
| BstNI | CCWGG | 1 cut(s) | 208 |
| BstSCI | CCNGG | 1 cut(s) | 206 |
| BstSFI | CTRYAG | 1 cut(s) | 1499 |
| BstSLI | GKGCMC | 2 cut(s) | 111, 635 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV1I | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| BstV2I | GAAGAC | 2 cut(s) | 81, 999 |
| BstX2I | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1363 |
| BstYI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| BstZ17I | GTATAC | 1 cut(s) | 1112 |
| Bsu36I | CCTNAGG | 1 cut(s) | 191 |
| BsuI | GTATCC | 2 cut(s) | 1438, 1520 |
| BsuRI | GGCC | 2 cut(s) | 109, 779 |
| BtgI | CCRYGG | 1 cut(s) | 89 |
| BtgZI | GCGATG | 2 cut(s) | 212, 318 |
| BtsCI | GGATG | 8 cut(s) | 241, 556, 679, 1273, 1411, 1419, 1699, 1728 |
| BveI | ACCTGC | 2 cut(s) | 287, 956 |
| Cac8I | GCNNGC | 3 cut(s) | 567, 1017, 1712 |
| CaiI | CAGNNNCTG | 1 cut(s) | 435 |
| CfoI | GCGC | 2 cut(s) | 168, 483 |
| Cfr13I | GGNCC | 4 cut(s) | 107, 108, 777, 1315 |
| Csp6I | GTAC | 3 cut(s) | 31, 985, 1225 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 648, 683 |
| CviAII | CATG | 5 cut(s) | 203, 493, 756, 791, 951 |
| CviQI | GTAC | 3 cut(s) | 31, 985, 1225 |
| DdeI | CTNAG | 5 cut(s) | 117, 191, 1011, 1154, 1432 |
| Eam1104I | CTCTTC | 1 cut(s) | 1248 |
| EarI | CTCTTC | 1 cut(s) | 1248 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 2 cut(s) | 111, 1496 |
| Eco31I | GGTCTC | 1 cut(s) | 936 |
| Eco47I | GGWCC | 1 cut(s) | 1315 |
| Eco57I | CTGAAG | 2 cut(s) | 312, 1649 |
| Eco81I | CCTNAGG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 634 |
| EcoO109I | RGGNCCY | 1 cut(s) | 107 |
| EcoRII | CCWGG | 1 cut(s) | 206 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT38I | GRGCYC | 2 cut(s) | 111, 1496 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 5 cut(s) | 206, 496, 759, 794, 954 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 123, 155 |
| FaqI | GGGAC | 1 cut(s) | 825 |
| FatI | CATG | 5 cut(s) | 202, 492, 755, 790, 950 |
| FauI | CCCGC | 2 cut(s) | 1008, 1017 |
| FbaI | TGATCA | 5 cut(s) | 123, 313, 676, 1378, 1422 |
| FblI | GTMKAC | 1 cut(s) | 1111 |
| Fnu4HI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| FokI | GGATG | 8 cut(s) | 248, 543, 686, 1280, 1418, 1426, 1706, 1735 |
| FriOI | GRGCYC | 2 cut(s) | 111, 1496 |
| Fsp4HI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| FspBI | CTAG | 3 cut(s) | 384, 542, 1715 |
| FspI | TGCGCA | 1 cut(s) | 167 |
| GlaI | GCGC | 2 cut(s) | 167, 482 |
| GluI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| GsaI | CCCAGC | 3 cut(s) | 235, 565, 1171 |
| GsuI | CTGGAG | 2 cut(s) | 333, 1171 |
| HaeIII | GGCC | 2 cut(s) | 109, 779 |
| HhaI | GCGC | 2 cut(s) | 168, 483 |
| Hin1I | GRCGYC | 1 cut(s) | 60 |
| Hin1II | CATG | 5 cut(s) | 206, 496, 759, 794, 954 |
| Hin6I | GCGC | 2 cut(s) | 166, 481 |
| HinP1I | GCGC | 2 cut(s) | 166, 481 |
| HindIII | AAGCTT | 2 cut(s) | 245, 1085 |
| HphI | GGTGA | 5 cut(s) | 118, 133, 184, 738, 1362 |
| Hpy166II | GTNNAC | 4 cut(s) | 413, 902, 1112, 1174 |
| Hpy188III | TCNNGA | 8 cut(s) | 47, 56, 67, 320, 326, 593, 941, 1188 |
| Hpy8I | GTNNAC | 4 cut(s) | 413, 902, 1112, 1174 |
| Hpy99I | CGWCG | 3 cut(s) | 26, 62, 1650 |
| HpyAV | CCTTC | 9 cut(s) | 148, 262, 1096, 1114, 1135, 1531, 1543, 1673, 1713 |
| HpyCH4III | ACNGT | 7 cut(s) | 307, 431, 584, 808, 823, 1058, 1472 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 18, 432, 489, 562, 1016, 1021, 1592 |
| HpyF3I | CTNAG | 5 cut(s) | 117, 191, 1011, 1154, 1432 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92I | GRCGYC | 1 cut(s) | 60 |
| Hsp92II | CATG | 5 cut(s) | 206, 496, 759, 794, 954 |
| HspAI | GCGC | 2 cut(s) | 166, 481 |
| Ksp22I | TGATCA | 5 cut(s) | 123, 313, 676, 1378, 1422 |
| LguI | GCTCTTC | 1 cut(s) | 1248 |
| LmnI | GCTCC | 5 cut(s) | 196, 769, 929, 1528, 1702 |
| Lsp1109I | GCAGC | 4 cut(s) | 30, 863, 1333, 1336 |
| LweI | GCATC | 4 cut(s) | 565, 1404, 1562, 1684 |
| MaeI | CTAG | 3 cut(s) | 384, 542, 1715 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MaeIII | GTNAC | 5 cut(s) | 301, 848, 1058, 1094, 1368 |
| MbiI | CCGCTC | 1 cut(s) | 1015 |
| MboII | GAAGA | 7 cut(s) | 77, 86, 386, 581, 877, 1004, 1265 |
| MflI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| MhlI | GDGCHC | 5 cut(s) | 111, 201, 635, 641, 1496 |
| MluCI | AATT | 7 cut(s) | 343, 575, 713, 811, 1128, 1303, 1349 |
| MluI | ACGCGT | 1 cut(s) | 664 |
| MlyI | GAGTC | 5 cut(s) | 71, 605, 1139, 1176, 1376 |
| MseI | TTAA | 5 cut(s) | 624, 761, 810, 1083, 1263 |
| MslI | CAYNNNNRTG | 1 cut(s) | 975 |
| MspA1I | CMGCKG | 1 cut(s) | 1167 |
| MspR9I | CCNGG | 1 cut(s) | 208 |
| Mva1269I | GAATGC | 1 cut(s) | 661 |
| MvaI | CCWGG | 1 cut(s) | 208 |
| MvnI | CGCG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 18, 432, 489, 562, 1016, 1021, 1592 |
| NlaIII | CATG | 5 cut(s) | 206, 496, 759, 794, 954 |
| NlaIV | GGNNCC | 3 cut(s) | 108, 109, 632 |
| NmuCI | GTSAC | 2 cut(s) | 848, 1368 |
| NsbI | TGCGCA | 1 cut(s) | 167 |
| PaqCI | CACCTGC | 1 cut(s) | 287 |
| PciSI | GCTCTTC | 1 cut(s) | 1248 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 63 |
| PctI | GAATGC | 1 cut(s) | 661 |
| PfeI | GAWTC | 6 cut(s) | 50, 94, 134, 797, 1076, 1150 |
| PkrI | GCNGC | 4 cut(s) | 20, 878, 1323, 1326 |
| PleI | GAGTC | 5 cut(s) | 71, 604, 1139, 1176, 1375 |
| PpsI | GAGTC | 5 cut(s) | 71, 604, 1139, 1176, 1375 |
| Psp6I | CCWGG | 1 cut(s) | 206 |
| PspFI | CCCAGC | 3 cut(s) | 231, 561, 1167 |
| PspGI | CCWGG | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 3 cut(s) | 108, 109, 632 |
| PspOMI | GGGCCC | 1 cut(s) | 107 |
| PspPI | GGNCC | 4 cut(s) | 107, 108, 777, 1315 |
| PstNI | CAGNNNCTG | 1 cut(s) | 435 |
| PsuI | RGATCY | 3 cut(s) | 322, 1027, 1603 |
| PvuII | CAGCTG | 1 cut(s) | 1167 |
| RsaI | GTAC | 3 cut(s) | 32, 986, 1226 |
| RsaNI | GTAC | 3 cut(s) | 31, 985, 1225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 975 |
| SapI | GCTCTTC | 1 cut(s) | 1248 |
| SaqAI | TTAA | 5 cut(s) | 624, 761, 810, 1083, 1263 |
| SatI | GCNGC | 4 cut(s) | 19, 877, 1322, 1325 |
| Sau96I | GGNCC | 4 cut(s) | 107, 108, 777, 1315 |
| ScaI | AGTACT | 1 cut(s) | 32 |
| SchI | GAGTC | 5 cut(s) | 71, 605, 1139, 1176, 1376 |
| ScrFI | CCNGG | 1 cut(s) | 208 |
| SduI | GDGCHC | 5 cut(s) | 111, 201, 635, 641, 1496 |
| SfaNI | GCATC | 4 cut(s) | 565, 1404, 1562, 1684 |
| SfcI | CTRYAG | 1 cut(s) | 1499 |
| SinI | GGWCC | 1 cut(s) | 1315 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 975 |
| SmlI | CTYRAG | 2 cut(s) | 593, 1331 |
| SmoI | CTYRAG | 2 cut(s) | 593, 1331 |
| Sse9I | AATT | 7 cut(s) | 343, 575, 713, 811, 1128, 1303, 1349 |
| SsiI | CCGC | 4 cut(s) | 147, 254, 1015, 1024 |
| SspMI | CTAG | 3 cut(s) | 384, 542, 1715 |
| StyD4I | CCNGG | 1 cut(s) | 206 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 7 cut(s) | 307, 431, 584, 808, 823, 1058, 1472 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 6 cut(s) | 57, 66, 940, 1148, 1535, 1645 |
| TasI | AATT | 7 cut(s) | 343, 575, 713, 811, 1128, 1303, 1349 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TfiI | GAWTC | 6 cut(s) | 50, 94, 134, 797, 1076, 1150 |
| Tru1I | TTAA | 5 cut(s) | 624, 761, 810, 1083, 1263 |
| Tru9I | TTAA | 5 cut(s) | 624, 761, 810, 1083, 1263 |
| TseFI | GTSAC | 2 cut(s) | 848, 1368 |
| TseI | GCWGC | 4 cut(s) | 18, 876, 1321, 1324 |
| Tsp45I | GTSAC | 2 cut(s) | 848, 1368 |
| TspDTI | ATGAA | 8 cut(s) | 87, 212, 537, 744, 810, 815, 1206, 1410 |
| TspGWI | ACGGA | 3 cut(s) | 78, 1457, 1663 |
| VpaK11BI | GGWCC | 1 cut(s) | 1315 |
| XapI | RAATTY | 2 cut(s) | 575, 1303 |
| XmiI | GTMKAC | 1 cut(s) | 1111 |
| XspI | CTAG | 3 cut(s) | 384, 542, 1715 |
| ZraI | GACGTC | 1 cut(s) | 61 |
| ZrmI | AGTACT | 1 cut(s) | 32 |