Prupe.1G384900_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
34513596 .. 34518660
5065 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G384900.4

Sequence Viewer

Length: 1635 bp
ATGGAGGATGACTACTATGTGAGCAGCGACGATGACTATTACGACGAGGATGATGATCGCAACAATATGGAGCTGTTGGAATACGTTGAGAATTATGAGAGTCTCAGGCCTGAGGCTCCGACGAGTAAGGTTATTTCAAAAGAATCTCTCTTGGCTGCACAGAGGGATGACTTGCAAAGGGTAATGGATGTGTTATCATTGAAAGAATACCACGCCCGAACCTTGCTCATCCATTATCGTTGGGATGTTGACAAAGTGCTTGCAGTGCTTGTAGAGAGGGGGAAAGACAGATTATATGCCGAAGCAGGTGTGACTGTGGTAGAGGATGACAATCTTGTCTCATCACAGTTTTCATCTGAGGTTATGTGTGGTATTTGCATGGACGAGATTCCTTCTGATCAGGTGACAATAATGGATTGCGGTCACTACTTCTGCAACTATTGTTGGACAGAGCATTTTATTGTGAAAATAAATGACGGTCAGAGTAGGCGCATTAAATGCATGGCACACAAGTGCAATGCTATTTGCGATGAAGCAATAATCAGAAATCTAGTCAGTGCAAGGGATCCTAATCTGGCAGAGAAATTTGAGCGTTTCCTTCTGGAATCATATATTGAGGATAATAGAAAGGTGAAGTGGTGCCCAAGTGTTCCCCATTGTGGAAATGCTATACGTATTGAGGATGATGAATTATCATGTGAGGTTGAATGTGCATGTGGGCTGCAATTCTGTTTTAAATGCTTATCTAAAGCACACTCCCCTTGTTCATGCCGAATGTGGGAACTGTGGTGTCAGAAGTGCCAAGATGAATCAGTGACTGTTAATTATATTGCAGTCAATACGAAATCTTGCCCAAAATGTTACAAGCTGGTTGAAAAAAATGGAGGATGCAATCTAGTTATCTGTGTCTGTGGACAACCATTTTGTTGGCTCTGTGGTGCACCAACTGGTTCGGATCATACATGGGATTCCATCGCGGGACACAGTTGTGGACGATTCAAAGAAGACGAGGATATGAAACTTGAGCTGGCCAAGAGGGACCTATTCCGTTACACTCACTACTTCAACCGTTATCAAGCTCATACAGATTCTCTTAAGCTTGAATCTACACTGAAGAAAAGCATACAAGAAAAGATATCATGTTTGGAAGAAAAGGAATTGATGTTTAAAGATTTAAGCTGGGCAACCAAAGCTCTCTACAGACTCTTCAGGTCGAGGCAGATTATTTCATATTCCTACCCATTTGCATATCACATGTTTGGTGATTTATTCGAGAATGAAATGACGGCGGAAGAAAGGACAATAAAACAAAATTTATTTGAGGACCAGCAGCAGCAGCTTGAGGCAAATATGGAGAAGCTTTCTTTGTTTACGGAGGAGCCTTTTCATGAATATAAACACGAACAAATTATGGAATTGAGAATGAGGATCTTGAATCTTTCTACGCTTACTGATAAGCTCTGCGAAAAATTGTATGATTGCATTGAGAATGATTTGCTGGGTTCCCTCCAGTGGACAAGACACAGTATTGCTCCTTACAATTCCAATGGCGTGGAGAAAGCTTCAGAACTTATGGTTTCTAGGGACACCACCACCTCCAATTATGAAATTGATTTGGCCACCAATGTTGACTAG

Protein Analysis

545

Amino Acids

63.32

Weight (kDa)

4.93

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AasI GACNNNNNNGTC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 639
AccII CGCG 1 cut(s) 977
AciI CCGC 3 cut(s) 420, 977, 1289
AclWI GGATC 4 cut(s) 560, 573, 963, 1436
AcoI YGGCCR 2 cut(s) 1029, 1617
AcsI RAATTY 2 cut(s) 584, 1312
AcuI CTGAAG 3 cut(s) 1133, 1192, 1548
AfiI CCNNNNNNNGG 3 cut(s) 659, 778, 1512
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 1 cut(s) 1254
AgsI TTSAA 8 cut(s) 138, 202, 707, 875, 1000, 1066, 1103, 1435
AleI CACNNNNGTG 2 cut(s) 511, 987
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 2 cut(s) 107, 343
Alw44I GTGCAC 1 cut(s) 939
AlwI GGATC 4 cut(s) 560, 573, 963, 1436
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 3 cut(s) 107, 1029, 1617
ApaLI GTGCAC 1 cut(s) 939
ApeKI GCWGC 6 cut(s) 24, 155, 721, 1330, 1333, 1336
ApoI RAATTY 2 cut(s) 584, 1312
ArsI GACNNNNNNTTYG 2 cut(s) 906, 938
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 1039, 1324
AsuHPI GGTGA 3 cut(s) 415, 643, 1274
AvaII GGWCC 2 cut(s) 1039, 1324
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 644, 943
BalI TGGCCA 2 cut(s) 1031, 1619
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 6 cut(s) 36, 142, 708, 1342, 1345, 1348
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 1302
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 107, 343
BfaI CTAG 4 cut(s) 551, 896, 1581, 1633
BfmI CTRYAG 1 cut(s) 1198
BfrI CTTAAG 1 cut(s) 1094
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 6 cut(s) 25, 156, 722, 1331, 1334, 1337
BlsI GCNGC 6 cut(s) 26, 157, 723, 1332, 1335, 1338
Bme18I GGWCC 2 cut(s) 1039, 1324
BmgT120I GGNCC 2 cut(s) 1039, 1324
BmiI GGNNCC 6 cut(s) 117, 567, 641, 1040, 1380, 1504
BmsI GCATC 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 1493
BpuEI CTTGAG 2 cut(s) 1043, 1361
BsaAI YACGTR 1 cut(s) 674
BsaBI GATNNNNATC 3 cut(s) 54, 330, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 778, 1512
Bse1I ACTGG 2 cut(s) 952, 1510
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 3 cut(s) 54, 330, 570
BseGI GGATG 9 cut(s) 13, 55, 172, 193, 228, 250, 331, 688, 893
BseJI GATNNNNATC 3 cut(s) 54, 330, 570
BseLI CCNNNNNNNGG 3 cut(s) 659, 778, 1512
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 3 cut(s) 102, 118, 348
BseNI ACTGG 2 cut(s) 952, 1510
BseRI GAGGAG 1 cut(s) 1391
BseSI GKGCMC 2 cut(s) 644, 943
BseXI GCAGC 6 cut(s) 36, 142, 708, 1342, 1345, 1348
BseYI CCCAGC 2 cut(s) 1179, 1498
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 3 cut(s) 109, 1031, 1619
BshNI GGYRCC 1 cut(s) 639
BsiHKAI GWGCWC 1 cut(s) 943
BslFI GGGAC 3 cut(s) 993, 1052, 1598
BslI CCNNNNNNNGG 3 cut(s) 659, 778, 1512
BsmAI GTCTC 2 cut(s) 107, 343
BsmFI GGGAC 3 cut(s) 993, 1052, 1598
BsnI GGCC 3 cut(s) 109, 1031, 1619
Bsp1286I GDGCHC 2 cut(s) 644, 943
Bsp143I GATC 5 cut(s) 55, 397, 565, 955, 1428
BspACI CCGC 3 cut(s) 420, 977, 1289
BspANI GGCC 3 cut(s) 109, 1031, 1619
BspCNI CTCAG 3 cut(s) 103, 117, 349
BspFNI CGCG 1 cut(s) 977
BspHI TCATGA 1 cut(s) 1387
BspLI GGNNCC 6 cut(s) 117, 567, 641, 1040, 1380, 1504
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 4 cut(s) 560, 573, 963, 1436
BspT107I GGYRCC 1 cut(s) 639
BspTI CTTAAG 1 cut(s) 1094
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 2 cut(s) 952, 1510
BssMI GATC 5 cut(s) 55, 397, 565, 955, 1428
Bst4CI ACNGT 8 cut(s) 316, 348, 479, 786, 820, 986, 1070, 1526
Bst6I CTCTTC 1 cut(s) 1211
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 261, 1029
BstDEI CTNAG 3 cut(s) 104, 111, 357
BstF5I GGATG 9 cut(s) 13, 55, 172, 193, 228, 250, 331, 688, 893
BstFNI CGCG 1 cut(s) 977
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 5 cut(s) 58, 400, 568, 958, 1431
BstMAI GTCTC 2 cut(s) 107, 343
BstMBI GATC 5 cut(s) 55, 397, 565, 955, 1428
BstMWI GCNNNNNNNGC 4 cut(s) 265, 498, 1190, 1336
BstNSI RCATGY 2 cut(s) 717, 1258
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 2 cut(s) 644, 943
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 6 cut(s) 36, 142, 708, 1342, 1345, 1348
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 2 cut(s) 565, 1428
BstXI CCANNNNNNTGG 2 cut(s) 927, 1552
BstYI RGATCY 2 cut(s) 565, 1428
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 3 cut(s) 109, 1031, 1619
BtgZI GCGATG 2 cut(s) 543, 958
BtsCI GGATG 9 cut(s) 13, 55, 172, 193, 228, 250, 331, 688, 893
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 5 cut(s) 270, 562, 819, 1109, 1517
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 261, 1029
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 1 cut(s) 1387
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 1039, 1324
CspCI CAANNNNNGTGG 1 cut(s) 1609
CviAII CATG 9 cut(s) 379, 502, 696, 714, 768, 963, 1140, 1255, 1388
DdeI CTNAG 3 cut(s) 104, 111, 357
DpnI GATC 5 cut(s) 57, 399, 567, 957, 1430
DpnII GATC 5 cut(s) 55, 397, 565, 955, 1428
DraI TTTAAA 2 cut(s) 736, 1168
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 1029, 1617
Eam1104I CTCTTC 1 cut(s) 1211
EarI CTCTTC 1 cut(s) 1211
EciI GGCGGA 1 cut(s) 1304
Eco105I TACGTA 1 cut(s) 674
Eco147I AGGCCT 1 cut(s) 109
Eco32I GATATC 1 cut(s) 1137
Eco47I GGWCC 2 cut(s) 1039, 1324
Eco57I CTGAAG 3 cut(s) 1133, 1192, 1548
Eco81I CCTNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 1039
EcoRV GATATC 1 cut(s) 1137
EcoT22I ATGCAT 1 cut(s) 503
FaeI CATG 9 cut(s) 382, 505, 699, 717, 771, 966, 1143, 1258, 1391
FaqI GGGAC 3 cut(s) 993, 1052, 1598
FatI CATG 9 cut(s) 378, 501, 695, 713, 767, 962, 1139, 1254, 1387
FauI CCCGC 1 cut(s) 970
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 25, 156, 722, 1331, 1334, 1337
FokI GGATG 9 cut(s) 20, 62, 179, 200, 215, 257, 338, 695, 900
Fsp4HI GCNGC 6 cut(s) 25, 156, 722, 1331, 1334, 1337
FspBI CTAG 4 cut(s) 551, 896, 1581, 1633
GlaI GCGC 1 cut(s) 491
GluI GCNGC 6 cut(s) 25, 156, 722, 1331, 1334, 1337
GsaI CCCAGC 2 cut(s) 1183, 1502
GsuI CTGGAG 1 cut(s) 1493
HaeIII GGCC 3 cut(s) 109, 1031, 1619
HhaI GCGC 1 cut(s) 492
Hin1II CATG 9 cut(s) 382, 505, 699, 717, 771, 966, 1143, 1258, 1391
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 2 cut(s) 250, 1630
HindII GTYRAC 2 cut(s) 250, 1630
HindIII AAGCTT 3 cut(s) 1097, 1358, 1560
HphI GGTGA 3 cut(s) 415, 643, 1274
Hpy166II GTNNAC 7 cut(s) 250, 914, 941, 992, 1371, 1515, 1630
Hpy188I TCNGA 8 cut(s) 120, 358, 397, 483, 545, 795, 955, 1567
Hpy188III TCNNGA 4 cut(s) 602, 1273, 1388, 1432
Hpy8I GTNNAC 7 cut(s) 250, 914, 941, 992, 1371, 1515, 1630
Hpy99I CGWCG 3 cut(s) 32, 47, 124
HpyAV CCTTC 2 cut(s) 402, 608
HpyCH4III ACNGT 8 cut(s) 316, 348, 479, 786, 820, 986, 1070, 1526
HpyCH4IV ACGT 2 cut(s) 84, 673
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 498, 1190, 1336
HpyF3I CTNAG 3 cut(s) 104, 111, 357
HpySE526I ACGT 2 cut(s) 84, 673
Hsp92II CATG 9 cut(s) 382, 505, 699, 717, 771, 966, 1143, 1258, 1391
HspAI GCGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 5 cut(s) 55, 397, 565, 955, 1428
LmnI GCTCC 4 cut(s) 70, 121, 1378, 1537
Lsp1109I GCAGC 6 cut(s) 36, 142, 708, 1342, 1345, 1348
LweI GCATC 1 cut(s) 878
MaeI CTAG 4 cut(s) 551, 896, 1581, 1633
MaeII ACGT 2 cut(s) 84, 673
MaeIII GTNAC 6 cut(s) 310, 403, 422, 814, 860, 1049
MalI GATC 5 cut(s) 57, 399, 567, 957, 1430
MboI GATC 5 cut(s) 55, 397, 565, 955, 1428
MboII GAAGA 5 cut(s) 1016, 1126, 1160, 1198, 1304
MflI RGATCY 2 cut(s) 565, 1428
MhlI GDGCHC 2 cut(s) 644, 943
MlsI TGGCCA 2 cut(s) 1031, 1619
MluNI TGGCCA 2 cut(s) 1031, 1619
MlyI GAGTC 2 cut(s) 109, 1197
MmeI TCCRAC 3 cut(s) 57, 143, 425
Mox20I TGGCCA 2 cut(s) 1031, 1619
Mph1103I ATGCAT 1 cut(s) 503
MscI TGGCCA 2 cut(s) 1031, 1619
MseI TTAA 6 cut(s) 495, 735, 822, 1095, 1167, 1175
MslI CAYNNNNRTG 2 cut(s) 511, 987
Msp20I TGGCCA 2 cut(s) 1031, 1619
MspCI CTTAAG 1 cut(s) 1094
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 4 cut(s) 265, 498, 1190, 1336
NdeII GATC 5 cut(s) 55, 397, 565, 955, 1428
NlaIII CATG 9 cut(s) 382, 505, 699, 717, 771, 966, 1143, 1258, 1391
NlaIV GGNNCC 6 cut(s) 117, 567, 641, 1040, 1380, 1504
NmuCI GTSAC 4 cut(s) 310, 403, 422, 814
NsiI ATGCAT 1 cut(s) 503
NspI RCATGY 2 cut(s) 717, 1258
OliI CACNNNNGTG 2 cut(s) 511, 987
PagI TCATGA 1 cut(s) 1387
PaqCI CACCTGC 1 cut(s) 296
PceI AGGCCT 1 cut(s) 109
PciI ACATGT 1 cut(s) 1254
PfeI GAWTC 9 cut(s) 143, 388, 605, 809, 968, 996, 1088, 1103, 1435
PkrI GCNGC 6 cut(s) 26, 157, 723, 1332, 1335, 1338
PleI GAGTC 2 cut(s) 108, 1197
PpsI GAGTC 2 cut(s) 108, 1197
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 1039
PscI ACATGT 1 cut(s) 1254
Psp5II RGGWCCY 1 cut(s) 1039
PspFI CCCAGC 2 cut(s) 1179, 1498
PspN4I GGNNCC 6 cut(s) 117, 567, 641, 1040, 1380, 1504
PspPI GGNCC 2 cut(s) 1039, 1324
PspPPI RGGWCCY 1 cut(s) 1039
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 565, 1428
RseI CAYNNNNRTG 2 cut(s) 511, 987
SaqAI TTAA 6 cut(s) 495, 735, 822, 1095, 1167, 1175
SatI GCNGC 6 cut(s) 25, 156, 722, 1331, 1334, 1337
Sau3AI GATC 5 cut(s) 55, 397, 565, 955, 1428
Sau96I GGNCC 2 cut(s) 1039, 1324
SchI GAGTC 2 cut(s) 109, 1197
SduI GDGCHC 2 cut(s) 644, 943
SfaNI GCATC 1 cut(s) 878
SfcI CTRYAG 1 cut(s) 1198
SinI GGWCC 2 cut(s) 1039, 1324
SmiMI CAYNNNNRTG 2 cut(s) 511, 987
SmlI CTYRAG 3 cut(s) 1022, 1094, 1340
SmoI CTYRAG 3 cut(s) 1022, 1094, 1340
SnaBI TACGTA 1 cut(s) 674
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 3 cut(s) 420, 977, 1289
SspMI CTAG 4 cut(s) 551, 896, 1581, 1633
StuI AGGCCT 1 cut(s) 109
TaaI ACNGT 8 cut(s) 316, 348, 479, 786, 820, 986, 1070, 1526
TaiI ACGT 2 cut(s) 87, 676
TaqI TCGA 2 cut(s) 1214, 1272
TfiI GAWTC 9 cut(s) 143, 388, 605, 809, 968, 996, 1088, 1103, 1435
Tru1I TTAA 6 cut(s) 495, 735, 822, 1095, 1167, 1175
Tru9I TTAA 6 cut(s) 495, 735, 822, 1095, 1167, 1175
TscAI CASTG 5 cut(s) 270, 562, 819, 1116, 1517
TseFI GTSAC 4 cut(s) 310, 403, 422, 814
TseI GCWGC 6 cut(s) 24, 155, 721, 1330, 1333, 1336
Tsp45I GTSAC 4 cut(s) 310, 403, 422, 814
TspGWI ACGGA 2 cut(s) 1037, 1388
TspRI CASTG 5 cut(s) 270, 562, 819, 1116, 1517
Vha464I CTTAAG 1 cut(s) 1094
VneI GTGCAC 1 cut(s) 939
VpaK11BI GGWCC 2 cut(s) 1039, 1324
XapI RAATTY 2 cut(s) 584, 1312
XceI RCATGY 2 cut(s) 717, 1258
XspI CTAG 4 cut(s) 551, 896, 1581, 1633
Zsp2I ATGCAT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.