E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 296 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 335 |
| Acc36I | ACCTGC | 1 cut(s) | 296 |
| AccB1I | GGYRCC | 1 cut(s) | 639 |
| AccII | CGCG | 1 cut(s) | 977 |
| AciI | CCGC | 3 cut(s) | 420, 977, 1289 |
| AclWI | GGATC | 4 cut(s) | 560, 573, 963, 1436 |
| AcoI | YGGCCR | 2 cut(s) | 1029, 1617 |
| AcsI | RAATTY | 2 cut(s) | 584, 1312 |
| AcuI | CTGAAG | 3 cut(s) | 1133, 1192, 1548 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 659, 778, 1512 |
| AflII | CTTAAG | 1 cut(s) | 1094 |
| AflIII | ACRYGT | 1 cut(s) | 1254 |
| AgsI | TTSAA | 8 cut(s) | 138, 202, 707, 875, 1000, 1066, 1103, 1435 |
| AleI | CACNNNNGTG | 2 cut(s) | 511, 987 |
| Alw21I | GWGCWC | 1 cut(s) | 943 |
| Alw26I | GTCTC | 2 cut(s) | 107, 343 |
| Alw44I | GTGCAC | 1 cut(s) | 939 |
| AlwI | GGATC | 4 cut(s) | 560, 573, 963, 1436 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 818 |
| AoxI | GGCC | 3 cut(s) | 107, 1029, 1617 |
| ApaLI | GTGCAC | 1 cut(s) | 939 |
| ApeKI | GCWGC | 6 cut(s) | 24, 155, 721, 1330, 1333, 1336 |
| ApoI | RAATTY | 2 cut(s) | 584, 1312 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 906, 938 |
| AspLEI | GCGC | 1 cut(s) | 492 |
| AspS9I | GGNCC | 2 cut(s) | 1039, 1324 |
| AsuHPI | GGTGA | 3 cut(s) | 415, 643, 1274 |
| AvaII | GGWCC | 2 cut(s) | 1039, 1324 |
| AxyI | CCTNAGG | 1 cut(s) | 111 |
| BaeGI | GKGCMC | 2 cut(s) | 644, 943 |
| BalI | TGGCCA | 2 cut(s) | 1031, 1619 |
| BamHI | GGATCC | 1 cut(s) | 565 |
| BanI | GGYRCC | 1 cut(s) | 639 |
| BbsI | GAAGAC | 1 cut(s) | 1011 |
| Bbv12I | GWGCWC | 1 cut(s) | 943 |
| BbvI | GCAGC | 6 cut(s) | 36, 142, 708, 1342, 1345, 1348 |
| BccI | CCATC | 1 cut(s) | 980 |
| BceAI | ACGGC | 1 cut(s) | 1302 |
| BclI | TGATCA | 1 cut(s) | 397 |
| BcoDI | GTCTC | 2 cut(s) | 107, 343 |
| BfaI | CTAG | 4 cut(s) | 551, 896, 1581, 1633 |
| BfmI | CTRYAG | 1 cut(s) | 1198 |
| BfrI | CTTAAG | 1 cut(s) | 1094 |
| BfuAI | ACCTGC | 1 cut(s) | 296 |
| BisI | GCNGC | 6 cut(s) | 25, 156, 722, 1331, 1334, 1337 |
| BlsI | GCNGC | 6 cut(s) | 26, 157, 723, 1332, 1335, 1338 |
| Bme18I | GGWCC | 2 cut(s) | 1039, 1324 |
| BmgT120I | GGNCC | 2 cut(s) | 1039, 1324 |
| BmiI | GGNNCC | 6 cut(s) | 117, 567, 641, 1040, 1380, 1504 |
| BmsI | GCATC | 1 cut(s) | 878 |
| BpiI | GAAGAC | 1 cut(s) | 1011 |
| BpmI | CTGGAG | 1 cut(s) | 1493 |
| BpuEI | CTTGAG | 2 cut(s) | 1043, 1361 |
| BsaAI | YACGTR | 1 cut(s) | 674 |
| BsaBI | GATNNNNATC | 3 cut(s) | 54, 330, 570 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 659, 778, 1512 |
| Bse1I | ACTGG | 2 cut(s) | 952, 1510 |
| Bse21I | CCTNAGG | 1 cut(s) | 111 |
| Bse3DI | GCAATG | 1 cut(s) | 523 |
| Bse8I | GATNNNNATC | 3 cut(s) | 54, 330, 570 |
| BseGI | GGATG | 9 cut(s) | 13, 55, 172, 193, 228, 250, 331, 688, 893 |
| BseJI | GATNNNNATC | 3 cut(s) | 54, 330, 570 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 659, 778, 1512 |
| BseMI | GCAATG | 1 cut(s) | 523 |
| BseMII | CTCAG | 3 cut(s) | 102, 118, 348 |
| BseNI | ACTGG | 2 cut(s) | 952, 1510 |
| BseRI | GAGGAG | 1 cut(s) | 1391 |
| BseSI | GKGCMC | 2 cut(s) | 644, 943 |
| BseXI | GCAGC | 6 cut(s) | 36, 142, 708, 1342, 1345, 1348 |
| BseYI | CCCAGC | 2 cut(s) | 1179, 1498 |
| BsgI | GTGCAG | 1 cut(s) | 141 |
| Bsh1236I | CGCG | 1 cut(s) | 977 |
| BshFI | GGCC | 3 cut(s) | 109, 1031, 1619 |
| BshNI | GGYRCC | 1 cut(s) | 639 |
| BsiHKAI | GWGCWC | 1 cut(s) | 943 |
| BslFI | GGGAC | 3 cut(s) | 993, 1052, 1598 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 659, 778, 1512 |
| BsmAI | GTCTC | 2 cut(s) | 107, 343 |
| BsmFI | GGGAC | 3 cut(s) | 993, 1052, 1598 |
| BsnI | GGCC | 3 cut(s) | 109, 1031, 1619 |
| Bsp1286I | GDGCHC | 2 cut(s) | 644, 943 |
| Bsp143I | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| BspACI | CCGC | 3 cut(s) | 420, 977, 1289 |
| BspANI | GGCC | 3 cut(s) | 109, 1031, 1619 |
| BspCNI | CTCAG | 3 cut(s) | 103, 117, 349 |
| BspFNI | CGCG | 1 cut(s) | 977 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspLI | GGNNCC | 6 cut(s) | 117, 567, 641, 1040, 1380, 1504 |
| BspMI | ACCTGC | 1 cut(s) | 296 |
| BspPI | GGATC | 4 cut(s) | 560, 573, 963, 1436 |
| BspT107I | GGYRCC | 1 cut(s) | 639 |
| BspTI | CTTAAG | 1 cut(s) | 1094 |
| BsrDI | GCAATG | 1 cut(s) | 523 |
| BsrI | ACTGG | 2 cut(s) | 952, 1510 |
| BssMI | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| Bst4CI | ACNGT | 8 cut(s) | 316, 348, 479, 786, 820, 986, 1070, 1526 |
| Bst6I | CTCTTC | 1 cut(s) | 1211 |
| BstAFI | CTTAAG | 1 cut(s) | 1094 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 498 |
| BstBAI | YACGTR | 1 cut(s) | 674 |
| BstC8I | GCNNGC | 2 cut(s) | 261, 1029 |
| BstDEI | CTNAG | 3 cut(s) | 104, 111, 357 |
| BstF5I | GGATG | 9 cut(s) | 13, 55, 172, 193, 228, 250, 331, 688, 893 |
| BstFNI | CGCG | 1 cut(s) | 977 |
| BstHHI | GCGC | 1 cut(s) | 492 |
| BstKTI | GATC | 5 cut(s) | 58, 400, 568, 958, 1431 |
| BstMAI | GTCTC | 2 cut(s) | 107, 343 |
| BstMBI | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 265, 498, 1190, 1336 |
| BstNSI | RCATGY | 2 cut(s) | 717, 1258 |
| BstSFI | CTRYAG | 1 cut(s) | 1198 |
| BstSLI | GKGCMC | 2 cut(s) | 644, 943 |
| BstSNI | TACGTA | 1 cut(s) | 674 |
| BstUI | CGCG | 1 cut(s) | 977 |
| BstV1I | GCAGC | 6 cut(s) | 36, 142, 708, 1342, 1345, 1348 |
| BstV2I | GAAGAC | 1 cut(s) | 1011 |
| BstX2I | RGATCY | 2 cut(s) | 565, 1428 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 927, 1552 |
| BstYI | RGATCY | 2 cut(s) | 565, 1428 |
| Bsu36I | CCTNAGG | 1 cut(s) | 111 |
| BsuRI | GGCC | 3 cut(s) | 109, 1031, 1619 |
| BtgZI | GCGATG | 2 cut(s) | 543, 958 |
| BtsCI | GGATG | 9 cut(s) | 13, 55, 172, 193, 228, 250, 331, 688, 893 |
| BtsI | GCAGTG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 5 cut(s) | 270, 562, 819, 1109, 1517 |
| BveI | ACCTGC | 1 cut(s) | 296 |
| Cac8I | GCNNGC | 2 cut(s) | 261, 1029 |
| CaiI | CAGNNNCTG | 1 cut(s) | 818 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| CfoI | GCGC | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 2 cut(s) | 1039, 1324 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 1609 |
| CviAII | CATG | 9 cut(s) | 379, 502, 696, 714, 768, 963, 1140, 1255, 1388 |
| DdeI | CTNAG | 3 cut(s) | 104, 111, 357 |
| DpnI | GATC | 5 cut(s) | 57, 399, 567, 957, 1430 |
| DpnII | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| DraI | TTTAAA | 2 cut(s) | 736, 1168 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 335 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 335 |
| EaeI | YGGCCR | 2 cut(s) | 1029, 1617 |
| Eam1104I | CTCTTC | 1 cut(s) | 1211 |
| EarI | CTCTTC | 1 cut(s) | 1211 |
| EciI | GGCGGA | 1 cut(s) | 1304 |
| Eco105I | TACGTA | 1 cut(s) | 674 |
| Eco147I | AGGCCT | 1 cut(s) | 109 |
| Eco32I | GATATC | 1 cut(s) | 1137 |
| Eco47I | GGWCC | 2 cut(s) | 1039, 1324 |
| Eco57I | CTGAAG | 3 cut(s) | 1133, 1192, 1548 |
| Eco81I | CCTNAGG | 1 cut(s) | 111 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1039 |
| EcoRV | GATATC | 1 cut(s) | 1137 |
| EcoT22I | ATGCAT | 1 cut(s) | 503 |
| FaeI | CATG | 9 cut(s) | 382, 505, 699, 717, 771, 966, 1143, 1258, 1391 |
| FaqI | GGGAC | 3 cut(s) | 993, 1052, 1598 |
| FatI | CATG | 9 cut(s) | 378, 501, 695, 713, 767, 962, 1139, 1254, 1387 |
| FauI | CCCGC | 1 cut(s) | 970 |
| FbaI | TGATCA | 1 cut(s) | 397 |
| Fnu4HI | GCNGC | 6 cut(s) | 25, 156, 722, 1331, 1334, 1337 |
| FokI | GGATG | 9 cut(s) | 20, 62, 179, 200, 215, 257, 338, 695, 900 |
| Fsp4HI | GCNGC | 6 cut(s) | 25, 156, 722, 1331, 1334, 1337 |
| FspBI | CTAG | 4 cut(s) | 551, 896, 1581, 1633 |
| GlaI | GCGC | 1 cut(s) | 491 |
| GluI | GCNGC | 6 cut(s) | 25, 156, 722, 1331, 1334, 1337 |
| GsaI | CCCAGC | 2 cut(s) | 1183, 1502 |
| GsuI | CTGGAG | 1 cut(s) | 1493 |
| HaeIII | GGCC | 3 cut(s) | 109, 1031, 1619 |
| HhaI | GCGC | 1 cut(s) | 492 |
| Hin1II | CATG | 9 cut(s) | 382, 505, 699, 717, 771, 966, 1143, 1258, 1391 |
| Hin6I | GCGC | 1 cut(s) | 490 |
| HinP1I | GCGC | 1 cut(s) | 490 |
| HincII | GTYRAC | 2 cut(s) | 250, 1630 |
| HindII | GTYRAC | 2 cut(s) | 250, 1630 |
| HindIII | AAGCTT | 3 cut(s) | 1097, 1358, 1560 |
| HphI | GGTGA | 3 cut(s) | 415, 643, 1274 |
| Hpy166II | GTNNAC | 7 cut(s) | 250, 914, 941, 992, 1371, 1515, 1630 |
| Hpy188I | TCNGA | 8 cut(s) | 120, 358, 397, 483, 545, 795, 955, 1567 |
| Hpy188III | TCNNGA | 4 cut(s) | 602, 1273, 1388, 1432 |
| Hpy8I | GTNNAC | 7 cut(s) | 250, 914, 941, 992, 1371, 1515, 1630 |
| Hpy99I | CGWCG | 3 cut(s) | 32, 47, 124 |
| HpyAV | CCTTC | 2 cut(s) | 402, 608 |
| HpyCH4III | ACNGT | 8 cut(s) | 316, 348, 479, 786, 820, 986, 1070, 1526 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 673 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 265, 498, 1190, 1336 |
| HpyF3I | CTNAG | 3 cut(s) | 104, 111, 357 |
| HpySE526I | ACGT | 2 cut(s) | 84, 673 |
| Hsp92II | CATG | 9 cut(s) | 382, 505, 699, 717, 771, 966, 1143, 1258, 1391 |
| HspAI | GCGC | 1 cut(s) | 490 |
| Ksp22I | TGATCA | 1 cut(s) | 397 |
| Kzo9I | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| LmnI | GCTCC | 4 cut(s) | 70, 121, 1378, 1537 |
| Lsp1109I | GCAGC | 6 cut(s) | 36, 142, 708, 1342, 1345, 1348 |
| LweI | GCATC | 1 cut(s) | 878 |
| MaeI | CTAG | 4 cut(s) | 551, 896, 1581, 1633 |
| MaeII | ACGT | 2 cut(s) | 84, 673 |
| MaeIII | GTNAC | 6 cut(s) | 310, 403, 422, 814, 860, 1049 |
| MalI | GATC | 5 cut(s) | 57, 399, 567, 957, 1430 |
| MboI | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| MboII | GAAGA | 5 cut(s) | 1016, 1126, 1160, 1198, 1304 |
| MflI | RGATCY | 2 cut(s) | 565, 1428 |
| MhlI | GDGCHC | 2 cut(s) | 644, 943 |
| MlsI | TGGCCA | 2 cut(s) | 1031, 1619 |
| MluNI | TGGCCA | 2 cut(s) | 1031, 1619 |
| MlyI | GAGTC | 2 cut(s) | 109, 1197 |
| MmeI | TCCRAC | 3 cut(s) | 57, 143, 425 |
| Mox20I | TGGCCA | 2 cut(s) | 1031, 1619 |
| Mph1103I | ATGCAT | 1 cut(s) | 503 |
| MscI | TGGCCA | 2 cut(s) | 1031, 1619 |
| MseI | TTAA | 6 cut(s) | 495, 735, 822, 1095, 1167, 1175 |
| MslI | CAYNNNNRTG | 2 cut(s) | 511, 987 |
| Msp20I | TGGCCA | 2 cut(s) | 1031, 1619 |
| MspCI | CTTAAG | 1 cut(s) | 1094 |
| MvnI | CGCG | 1 cut(s) | 977 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 265, 498, 1190, 1336 |
| NdeII | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| NlaIII | CATG | 9 cut(s) | 382, 505, 699, 717, 771, 966, 1143, 1258, 1391 |
| NlaIV | GGNNCC | 6 cut(s) | 117, 567, 641, 1040, 1380, 1504 |
| NmuCI | GTSAC | 4 cut(s) | 310, 403, 422, 814 |
| NsiI | ATGCAT | 1 cut(s) | 503 |
| NspI | RCATGY | 2 cut(s) | 717, 1258 |
| OliI | CACNNNNGTG | 2 cut(s) | 511, 987 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PaqCI | CACCTGC | 1 cut(s) | 296 |
| PceI | AGGCCT | 1 cut(s) | 109 |
| PciI | ACATGT | 1 cut(s) | 1254 |
| PfeI | GAWTC | 9 cut(s) | 143, 388, 605, 809, 968, 996, 1088, 1103, 1435 |
| PkrI | GCNGC | 6 cut(s) | 26, 157, 723, 1332, 1335, 1338 |
| PleI | GAGTC | 2 cut(s) | 108, 1197 |
| PpsI | GAGTC | 2 cut(s) | 108, 1197 |
| Ppu21I | YACGTR | 1 cut(s) | 674 |
| PpuMI | RGGWCCY | 1 cut(s) | 1039 |
| PscI | ACATGT | 1 cut(s) | 1254 |
| Psp5II | RGGWCCY | 1 cut(s) | 1039 |
| PspFI | CCCAGC | 2 cut(s) | 1179, 1498 |
| PspN4I | GGNNCC | 6 cut(s) | 117, 567, 641, 1040, 1380, 1504 |
| PspPI | GGNCC | 2 cut(s) | 1039, 1324 |
| PspPPI | RGGWCCY | 1 cut(s) | 1039 |
| PstNI | CAGNNNCTG | 1 cut(s) | 818 |
| PsuI | RGATCY | 2 cut(s) | 565, 1428 |
| RseI | CAYNNNNRTG | 2 cut(s) | 511, 987 |
| SaqAI | TTAA | 6 cut(s) | 495, 735, 822, 1095, 1167, 1175 |
| SatI | GCNGC | 6 cut(s) | 25, 156, 722, 1331, 1334, 1337 |
| Sau3AI | GATC | 5 cut(s) | 55, 397, 565, 955, 1428 |
| Sau96I | GGNCC | 2 cut(s) | 1039, 1324 |
| SchI | GAGTC | 2 cut(s) | 109, 1197 |
| SduI | GDGCHC | 2 cut(s) | 644, 943 |
| SfaNI | GCATC | 1 cut(s) | 878 |
| SfcI | CTRYAG | 1 cut(s) | 1198 |
| SinI | GGWCC | 2 cut(s) | 1039, 1324 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 511, 987 |
| SmlI | CTYRAG | 3 cut(s) | 1022, 1094, 1340 |
| SmoI | CTYRAG | 3 cut(s) | 1022, 1094, 1340 |
| SnaBI | TACGTA | 1 cut(s) | 674 |
| SseBI | AGGCCT | 1 cut(s) | 109 |
| SsiI | CCGC | 3 cut(s) | 420, 977, 1289 |
| SspMI | CTAG | 4 cut(s) | 551, 896, 1581, 1633 |
| StuI | AGGCCT | 1 cut(s) | 109 |
| TaaI | ACNGT | 8 cut(s) | 316, 348, 479, 786, 820, 986, 1070, 1526 |
| TaiI | ACGT | 2 cut(s) | 87, 676 |
| TaqI | TCGA | 2 cut(s) | 1214, 1272 |
| TfiI | GAWTC | 9 cut(s) | 143, 388, 605, 809, 968, 996, 1088, 1103, 1435 |
| Tru1I | TTAA | 6 cut(s) | 495, 735, 822, 1095, 1167, 1175 |
| Tru9I | TTAA | 6 cut(s) | 495, 735, 822, 1095, 1167, 1175 |
| TscAI | CASTG | 5 cut(s) | 270, 562, 819, 1116, 1517 |
| TseFI | GTSAC | 4 cut(s) | 310, 403, 422, 814 |
| TseI | GCWGC | 6 cut(s) | 24, 155, 721, 1330, 1333, 1336 |
| Tsp45I | GTSAC | 4 cut(s) | 310, 403, 422, 814 |
| TspGWI | ACGGA | 2 cut(s) | 1037, 1388 |
| TspRI | CASTG | 5 cut(s) | 270, 562, 819, 1116, 1517 |
| Vha464I | CTTAAG | 1 cut(s) | 1094 |
| VneI | GTGCAC | 1 cut(s) | 939 |
| VpaK11BI | GGWCC | 2 cut(s) | 1039, 1324 |
| XapI | RAATTY | 2 cut(s) | 584, 1312 |
| XceI | RCATGY | 2 cut(s) | 717, 1258 |
| XspI | CTAG | 4 cut(s) | 551, 896, 1581, 1633 |
| Zsp2I | ATGCAT | 1 cut(s) | 503 |