Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001183

Physical Location & Seq

Genomic Coordinates Forward (+)

7646186 .. 7648418

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06560.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGGGAGCTTTGGGCCAAGAAGTGCCGAGATGAATCAGAGACAGTTAATTGGATCACAGTTCATACAAAACCTTGTCCCAAATGTCACAAACCCGTGGAGAAGAATGGTGGCTGCAACCTTGTGAGCTGTATCTGTGGACAAGCATTTTGGCCAGTTGGCTATGTGGTGGAGCGACTGGTCGAAACCATACGTGGTCAAGTATTGCAGGTCATAGCTGTGGTCGGTACAAAGAAGACAAAGAACAAAATGCTGAGAGGGCAAAGCGGGATCTCTACCTGGTATATGCACTATCATAACCGTTACAAAGCTCATACTGATTCCTTTAAGCTTGAAAGTAACTTGGAGGAGAGTATACAAAAGAAGGTGTCAATTTCAGAGGAGAAGGACTCGAATCTCAGAGATTTTAGTTGGGTAAACAATGGACTCTCCAGACTTTTCAGATCAAGGAGGGTTCTTTCATATTCGTACCCATTTGCTTTTTATATGTTTGGAGAAGAGCTGTTTAAGGATGAGATGACAACGGAGGAAAGGGAAATAAAACAAAATTTGTTTGAGGACCAGCAGCAGCAACTTGAGGAAAATGTTGAGAAATTATCCAAGTGTTTGGAGTCGCCTTTTGATCAGTATAGTGAGAATGAAGTTATGGATATAAGGATGCAAGTGATCAATCTCTCGGCAGTTACAGATACCCTATGTCAGAAAATGTATGACTGTATTGAGACTGATTTATTGGGCTCTCTACAACTTGGTATCCACAACATAGCTCCTTACAAGTCAAAGGGCATTGAGAAGGCATCAGACCTTCCCATTAGTTGGGTCAATAATGCTGATAAAGATCTGATTGGAATCCCGCAATGTAATGTAGTTATATTATTTGAGGATCGACAGAACTGGAACAACCTTCAGGTTTTGGAAGTTCAGGTGAGAGTGGATGCTCTTCTCGGAAGCGTGCTAGGAAGGAGGGTCTTGGAGGTGGTTTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

330

Amino Acids

38.06

Weight (kDa)

5.81

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16090 AT2G16090 AT2G16090 AT2G16090 AT2G16090 AT4G34370
fragaria_vesca	FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g07840 FvH4_2g40440 FvH4_2g40440
malus_domestica	MD00G1039300.v1.1 MD05G1071700.v1.1 MD08G1037700.v1.1 MD10G1083500.v1.1
prunus_persica	Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.1G384900_v2.0.a1 Prupe.8G106500_v2.0.a1 Prupe.8G106500_v2.0.a1 Prupe.8G106500_v2.0.a1
pyrus_communis	pycom05g06180 pycom08g03000 pycom10g06560 pycom15g02930
rosa_chinensis	RchiOBHm_Chr6g0262251 RchiOBHm_Chr6g0300291
rosa_laevigata	RLG00000011350 RLG00000014443
rosa_multiflora	Rmu_sc0001670.1_g000025 Rmu_sc0002510.1_g000028
rosa_roxburghii	Rroxscaffold_7G00167920 Rroxscaffold_7G00207940
rosa_rugosa	Rorug05G0595800 Rorug05G0595800 Rorug05G0595900 Rorug05G0595900
rosa_samantha	Rh6AG116000 Rh6AG407300 Rh6BG110300 Rh6BG414900 Rh6CG107800 Rh6CG422200 Rh6DG098200 Rh6DG407900
rosa_wichuraiana	Rw0G017080 Rw6G010090 Rw6G035620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	2 cut(s)	267, 854
AclWI	GGATC	3 cut(s)	62, 278, 891
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	2 cut(s)	229, 470
AfiI	CCNNNNNNNGG	1 cut(s)	816
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	7 cut(s)	10, 129, 218, 311, 331, 502, 767
AluI	AGCT	7 cut(s)	10, 129, 218, 311, 331, 502, 767
Alw26I	GTCTC	2 cut(s)	35, 716
AlwI	GGATC	3 cut(s)	62, 278, 891
AoxI	GGCC	2 cut(s)	15, 152
ApeKI	GCWGC	3 cut(s)	114, 565, 568
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspS9I	GGNCC	2 cut(s)	15, 559
AsuHPI	GGTGA	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	101, 577, 580
BciT130I	CCWGG	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	764
BclI	TGATCA	2 cut(s)	622, 666
BcoDI	GTCTC	2 cut(s)	35, 716
BfaI	CTAG	1 cut(s)	956
BfuAI	ACCTGC	1 cut(s)	199
BfuI	GTATCC	1 cut(s)	764
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	3 cut(s)	115, 566, 569
BlsI	GCNGC	3 cut(s)	116, 567, 570
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	15, 559
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	3 cut(s)	648, 806, 925
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	194
BsaBI	GATNNNNATC	2 cut(s)	837, 848
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse1I	ACTGG	3 cut(s)	155, 183, 899
Bse3DI	GCAATG	1 cut(s)	863
Bse8I	GATNNNNATC	2 cut(s)	837, 848
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	517, 663, 940
BseJI	GATNNNNATC	2 cut(s)	837, 848
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	2 cut(s)	245, 412
BseNI	ACTGG	3 cut(s)	155, 183, 899
BseRI	GAGGAG	2 cut(s)	362, 395
BseXI	GCAGC	3 cut(s)	101, 577, 580
BshFI	GGCC	2 cut(s)	17, 154
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	2 cut(s)	35, 716
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	17, 154
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp143I	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
BspACI	CCGC	2 cut(s)	267, 854
BspANI	GGCC	2 cut(s)	17, 154
BspCNI	CTCAG	2 cut(s)	246, 411
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	3 cut(s)	62, 278, 891
BspQI	GCTCTTC	2 cut(s)	492, 945
BsrDI	GCAATG	1 cut(s)	863
BsrI	ACTGG	3 cut(s)	155, 183, 899
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
BssNAI	GTATAC	1 cut(s)	356
Bst1107I	GTATAC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	4 cut(s)	46, 61, 302, 716
Bst6I	CTCTTC	2 cut(s)	492, 945
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	953
BstDEI	CTNAG	2 cut(s)	254, 398
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	517, 663, 940
BstKTI	GATC	8 cut(s)	57, 273, 446, 625, 669, 841, 886, 987
BstMAI	GTCTC	2 cut(s)	35, 716
BstMBI	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	101, 577, 580
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	270, 838
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	2 cut(s)	270, 838
BstZ17I	GTATAC	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	17, 154
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	517, 663, 940
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	953
Cfr13I	GGNCC	2 cut(s)	15, 559
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	228, 469
CviQI	GTAC	2 cut(s)	228, 469
DdeI	CTNAG	2 cut(s)	254, 398
DpnI	GATC	8 cut(s)	56, 272, 445, 624, 668, 840, 885, 986
DpnII	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
EaeI	YGGCCR	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	492, 945
EarI	CTCTTC	2 cut(s)	492, 945
Eco24I	GRGCYC	1 cut(s)	740
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	740
FaqI	GGGAC	1 cut(s)	63
FauI	CCCGC	2 cut(s)	260, 861
FbaI	TGATCA	2 cut(s)	622, 666
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	115, 566, 569
FokI	GGATG	3 cut(s)	524, 670, 947
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	3 cut(s)	115, 566, 569
FspBI	CTAG	1 cut(s)	956
GluI	GCNGC	3 cut(s)	115, 566, 569
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	17, 154
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	7 cut(s)	35, 320, 389, 394, 426, 611, 849
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	3 cut(s)	140, 356, 418
Hpy188I	TCNGA	8 cut(s)	40, 379, 401, 443, 702, 802, 843, 947
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	3 cut(s)	140, 356, 418
HpyAV	CCTTC	6 cut(s)	358, 379, 787, 815, 914, 954
HpyCH4III	ACNGT	4 cut(s)	46, 61, 302, 716
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	117, 208, 289, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	254, 398
HpySE526I	ACGT	1 cut(s)	193
Ksp22I	TGATCA	2 cut(s)	622, 666
Kzo9I	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
LguI	GCTCTTC	2 cut(s)	492, 945
LmnI	GCTCC	3 cut(s)	7, 172, 772
Lsp1109I	GCAGC	3 cut(s)	101, 577, 580
LweI	GCATC	3 cut(s)	648, 806, 925
MabI	ACCWGGT	1 cut(s)	278
MaeI	CTAG	1 cut(s)	956
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	4 cut(s)	86, 302, 338, 682
MalI	GATC	8 cut(s)	56, 272, 445, 624, 668, 840, 885, 986
MboI	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
MboII	GAAGA	4 cut(s)	115, 247, 509, 932
MflI	RGATCY	2 cut(s)	270, 838
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	154
MluCI	AATT	4 cut(s)	49, 372, 547, 593
MluNI	TGGCCA	1 cut(s)	154
MlyI	GAGTC	3 cut(s)	383, 420, 620
Mox20I	TGGCCA	1 cut(s)	154
MscI	TGGCCA	1 cut(s)	154
MseI	TTAA	3 cut(s)	48, 327, 507
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
NmeAIII	GCCGAG	2 cut(s)	53, 656
NmuCI	GTSAC	1 cut(s)	86
PciSI	GCTCTTC	2 cut(s)	492, 945
PfeI	GAWTC	4 cut(s)	35, 320, 394, 849
PflMI	CCANNNNNTGG	1 cut(s)	816
PkrI	GCNGC	3 cut(s)	116, 567, 570
PleI	GAGTC	3 cut(s)	383, 420, 619
PpsI	GAGTC	3 cut(s)	383, 420, 619
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	15, 559
PsuI	RGATCY	2 cut(s)	270, 838
RsaI	GTAC	2 cut(s)	229, 470
RsaNI	GTAC	2 cut(s)	228, 469
RseI	CAYNNNNRTG	1 cut(s)	218
SapI	GCTCTTC	2 cut(s)	492, 945
SaqAI	TTAA	3 cut(s)	48, 327, 507
SatI	GCNGC	3 cut(s)	115, 566, 569
Sau3AI	GATC	8 cut(s)	54, 270, 443, 622, 666, 838, 883, 984
Sau96I	GGNCC	2 cut(s)	15, 559
SchI	GAGTC	3 cut(s)	383, 420, 620
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	740
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	3 cut(s)	648, 806, 925
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	4 cut(s)	49, 372, 547, 593
SsiI	CCGC	2 cut(s)	267, 854
SspMI	CTAG	1 cut(s)	956
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	46, 61, 302, 716
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	183, 392, 886
TasI	AATT	4 cut(s)	49, 372, 547, 593
TfiI	GAWTC	4 cut(s)	35, 320, 394, 849
Tru1I	TTAA	3 cut(s)	48, 327, 507
Tru9I	TTAA	3 cut(s)	48, 327, 507
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	114, 565, 568
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	4 cut(s)	48, 53, 450, 654
TspGWI	ACGGA	1 cut(s)	539
Van91I	CCANNNNNTGG	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.