Rh6CG422200

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
60533135 .. 60537068
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG422200.1

Sequence Viewer

Length: 1482 bp
ATGGAGGACGACTATTATGTGAGCAGCGAGGAAGAAGGCTATTACGATGACGAGGAGGATAATGATGATCCTGAGAATTTGGAGGAGGAGATGATGGCGTACGTTGAGAGTGAGACTCCAAAGTGTGAGGTGTCATCGACCAAGGTAATCTCAAAAGAATCTCTCTTGGCTGCACAGAGGGGCGATGTGCAGAGGGTAATGGATGTGCTGTCGCTGAAAGAGTACCATGCCCGAACCTTGCTCATCCATTATCGTTGGGATGTCGACAAGGTGCTTGCTGTGTATGTAGAGAGGGGGAAAGAGTTACTATACGAAAAGGCTGGTGTGACTATGGCGGAGCATGATGACACATCACAGCTTTCATCTGAGGTTATGTGTGATATTTGCATGGATGAAATTCCGGCTAATGAGGTCACAATCATGGATTGCAATCACGTTTTTTGTAACGAATGTTGGACAGAGCATTTTATTGTGAAAATAAACGAGGGTCAAAGTAGGCGCATTAAATGCATGGCACACAAGTGCAATGCTGTTTGTGACGAAGCAATAATCAGAAATCTGGTCAGTGCGAGGGATCCTAATCTGGCAGAGAAGTTTGATCGTTTTCTTCTGGAATCATATATTGAGGATAATAGAAAGGTGAAGTGGTGCCCGAGTATTCCTCATTGTGGAAATGCTATTCGTATTGAGGAAGATGAGTTAATCGAGGTTGAATGTGCATGTGGAAAGCAATTCTGTTTTAGTTGCTTATGTGAAGCACACTCTCCTTGTTCATGCCAAATGTGGGACCAATGGTTGAAGAAGTGCGTAGATGAATCAGAGACTGTTAATTACATTTCAGTCAACACAAAGCATTGCCCAAAATGTAACAAGCTGGTTGAAAAGAATGGAGGATGCAATCTAGTTACCTGTATCTGTGGACAACCATTTTGCTGGCTCTGTGGTGCCCCAACTGGTTCGGACCATACATGGGATTCCATTGCAGGTCATGAGTGTGGACGATTCAAAGAAGACGAGGAGACGGACCTTGAGCAAACCAAGAAGGACCTATTTCGTTACACTCACTACTTCAACCGTTTTCAAGCTCATAAAGATTCTCTTAAGCTTGAAGCTGCGCTGAAGAAAACCGTACAAAGAAAAATAACATATTTGGAAGAAAACTTATCGTCATCGAAAGATTATAGCTGGACAACCGATGCGCTCAACAGACTCTTTAGATCAAGGCGAATTATTGCATATTCCTACCCATTTGCATATCACATGTTTGGTGATCTTTTCAAAAAAGAGATGACATTAGAACAAAGGACGATAAAACAGAACTTGTTTGAGGACCAGCAGCAGCAGCTTGAGGCCAGCATGGAGAAGCTTTCTATGTTTACAGAGGAACCTTTTGACCATTATTCAGAGGAGAAGCTTCACGATTTAAAATTGAGGATGATCAATCTTTCGACGCTTGTTGATAAGCTCTGCCTAAAATTGTAA

Protein Analysis

493

Amino Acids

57.45

Weight (kDa)

4.95

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 58 - 97 1.3e-08 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 197 - 259 3.9e-14 IBR domain, a half RING-finger domain
IBR PF01485 278 - 318 2.3e-06 IBR domain, a half RING-finger domain
IBR_1 PF22191 282 - 317 5.6e-07 IBR domain
Rcat_RNF216 PF26200 283 - 350 3e-07 RNF216 Rcat domain
Ariadne PF19422 352 - 493 2.6e-63 Ariadne domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 974
AccB1I GGYRCC 2 cut(s) 648, 944
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 335
AclWI GGATC 3 cut(s) 62, 569, 582
AcsI RAATTY 2 cut(s) 76, 396
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 3 cut(s) 101, 224, 1131
AfiI CCNNNNNNNGG 3 cut(s) 668, 784, 970
AflII CTTAAG 1 cut(s) 1100
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 8 cut(s) 713, 799, 881, 1006, 1072, 1082, 1109, 1279
AleI CACNNNNGTG 1 cut(s) 520
Alw26I GTCTC 3 cut(s) 107, 815, 1013
AlwI GGATC 3 cut(s) 62, 569, 582
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 1 cut(s) 652
AoxI GGCC 1 cut(s) 1350
ApeKI GCWGC 6 cut(s) 24, 170, 1112, 1336, 1339, 1342
ApoI RAATTY 2 cut(s) 76, 396
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
AspLEI GCGC 3 cut(s) 501, 1117, 1201
AspS9I GGNCC 5 cut(s) 787, 961, 1024, 1045, 1330
AsuHPI GGTGA 2 cut(s) 652, 1280
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 5 cut(s) 787, 961, 1024, 1045, 1330
BaeGI GKGCMC 2 cut(s) 653, 949
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 2 cut(s) 648, 944
BbsI GAAGAC 1 cut(s) 1017
BbvI GCAGC 6 cut(s) 36, 157, 1099, 1348, 1351, 1354
BccI CCATC 1 cut(s) 88
BclI TGATCA 1 cut(s) 1437
BcoDI GTCTC 3 cut(s) 107, 815, 1013
BfaI CTAG 1 cut(s) 902
BfrI CTTAAG 1 cut(s) 1100
BfuAI ACCTGC 1 cut(s) 974
BisI GCNGC 6 cut(s) 25, 171, 1113, 1337, 1340, 1343
BlsI GCNGC 6 cut(s) 26, 172, 1114, 1338, 1341, 1344
Bme18I GGWCC 5 cut(s) 787, 961, 1024, 1045, 1330
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 5 cut(s) 787, 961, 1024, 1045, 1330
BmiI GGNNCC 5 cut(s) 576, 650, 788, 946, 1386
BmsI GCATC 2 cut(s) 884, 1186
BpiI GAAGAC 1 cut(s) 1017
BplI GAGNNNNNCTC 4 cut(s) 100, 132, 646, 678
BpuEI CTTGAG 2 cut(s) 1049, 1367
BsaBI GATNNNNATC 2 cut(s) 429, 579
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 784, 970
Bse1I ACTGG 1 cut(s) 958
Bse3DI GCAATG 3 cut(s) 532, 853, 978
Bse8I GATNNNNATC 2 cut(s) 429, 579
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 6 cut(s) 208, 243, 265, 397, 899, 1440
BseJI GATNNNNATC 2 cut(s) 429, 579
BseLI CCNNNNNNNGG 3 cut(s) 668, 784, 970
BseMI GCAATG 3 cut(s) 532, 853, 978
BseMII CTCAG 2 cut(s) 63, 357
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 5 cut(s) 68, 98, 101, 1031, 1421
BseSI GKGCMC 2 cut(s) 653, 949
BseXI GCAGC 6 cut(s) 36, 157, 1099, 1348, 1351, 1354
BsgI GTGCAG 2 cut(s) 156, 209
BshFI GGCC 1 cut(s) 1352
BshNI GGYRCC 2 cut(s) 648, 944
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 1 cut(s) 401
BsiWI CGTACG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 3 cut(s) 668, 784, 970
BsmAI GTCTC 3 cut(s) 107, 815, 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 1 cut(s) 800
BsnI GGCC 1 cut(s) 1352
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 2 cut(s) 653, 949
Bsp143I GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 1352
BspCNI CTCAG 2 cut(s) 64, 358
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 5 cut(s) 576, 650, 788, 946, 1386
BspMI ACCTGC 1 cut(s) 974
BspPI GGATC 3 cut(s) 62, 569, 582
BspT107I GGYRCC 2 cut(s) 648, 944
BspTI CTTAAG 1 cut(s) 1100
BsrDI GCAATG 3 cut(s) 532, 853, 978
BsrI ACTGG 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 826, 1076, 1129
BstAFI CTTAAG 1 cut(s) 1100
BstAPI GCANNNNNTGC 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 276, 935, 1354
BstDEI CTNAG 2 cut(s) 72, 366
BstF5I GGATG 6 cut(s) 208, 243, 265, 397, 899, 1440
BstHHI GCGC 3 cut(s) 501, 1117, 1201
BstKTI GATC 6 cut(s) 70, 577, 601, 1220, 1273, 1440
BstMAI GTCTC 3 cut(s) 107, 815, 1013
BstMBI GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
BstMWI GCNNNNNNNGC 2 cut(s) 507, 1342
BstNSI RCATGY 2 cut(s) 723, 1264
BstSLI GKGCMC 2 cut(s) 653, 949
BstV1I GCAGC 6 cut(s) 36, 157, 1099, 1348, 1351, 1354
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 933
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 1352
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 6 cut(s) 208, 243, 265, 397, 899, 1440
BtsIMutI CAGTG 1 cut(s) 571
BveI ACCTGC 1 cut(s) 974
Cac8I GCNNGC 3 cut(s) 276, 935, 1354
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 988
CfoI GCGC 3 cut(s) 501, 1117, 1201
Cfr13I GGNCC 5 cut(s) 787, 961, 1024, 1045, 1330
CseI GACGC 1 cut(s) 1459
Csp6I GTAC 3 cut(s) 100, 223, 1130
CviQI GTAC 3 cut(s) 100, 223, 1130
DdeI CTNAG 2 cut(s) 72, 366
DpnI GATC 6 cut(s) 69, 576, 600, 1219, 1272, 1439
DpnII GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
DraI TTTAAA 1 cut(s) 1425
EciI GGCGGA 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 5 cut(s) 787, 961, 1024, 1045, 1330
Eco57I CTGAAG 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 1045
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 1013
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 800
FbaI TGATCA 1 cut(s) 1437
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 25, 171, 1113, 1337, 1340, 1343
FokI GGATG 6 cut(s) 215, 230, 272, 404, 906, 1447
Fsp4HI GCNGC 6 cut(s) 25, 171, 1113, 1337, 1340, 1343
FspBI CTAG 1 cut(s) 902
GlaI GCGC 3 cut(s) 500, 1116, 1200
GluI GCNGC 6 cut(s) 25, 171, 1113, 1337, 1340, 1343
HaeIII GGCC 1 cut(s) 1352
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 1459
HhaI GCGC 3 cut(s) 501, 1117, 1201
Hin6I GCGC 3 cut(s) 499, 1115, 1199
HinP1I GCGC 3 cut(s) 499, 1115, 1199
HincII GTYRAC 2 cut(s) 265, 844
HindII GTYRAC 2 cut(s) 265, 844
HindIII AAGCTT 3 cut(s) 1103, 1364, 1412
HinfI GANTC 8 cut(s) 115, 158, 614, 815, 974, 1002, 1094, 1209
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 652, 1280
Hpy166II GTNNAC 5 cut(s) 265, 844, 920, 998, 1377
Hpy188I TCNGA 5 cut(s) 367, 554, 820, 961, 1405
Hpy188III TCNNGA 4 cut(s) 71, 611, 989, 1418
Hpy8I GTNNAC 5 cut(s) 265, 844, 920, 998, 1377
Hpy99I CGWCG 1 cut(s) 1453
HpyAV CCTTC 2 cut(s) 29, 1036
HpyCH4III ACNGT 3 cut(s) 826, 1076, 1129
HpyCH4IV ACGT 2 cut(s) 102, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 1342
HpyF3I CTNAG 2 cut(s) 72, 366
HpySE526I ACGT 2 cut(s) 102, 435
HspAI GCGC 3 cut(s) 499, 1115, 1199
Ksp22I TGATCA 1 cut(s) 1437
Kzo9I GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 6 cut(s) 36, 157, 1099, 1348, 1351, 1354
LweI GCATC 2 cut(s) 884, 1186
MaeI CTAG 1 cut(s) 902
MaeII ACGT 2 cut(s) 102, 435
MaeIII GTNAC 8 cut(s) 303, 325, 412, 443, 536, 866, 904, 1055
MalI GATC 6 cut(s) 69, 576, 600, 1219, 1272, 1439
MboI GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
MboII GAAGA 7 cut(s) 44, 599, 704, 811, 1022, 1132, 1166
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 653, 949
MluCI AATT 7 cut(s) 76, 396, 731, 829, 1227, 1427, 1475
MlyI GAGTC 2 cut(s) 109, 1203
MmeI TCCRAC 1 cut(s) 434
Mph1103I ATGCAT 1 cut(s) 512
MseI TTAA 5 cut(s) 504, 701, 828, 1101, 1424
MslI CAYNNNNRTG 3 cut(s) 419, 520, 993
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 507, 1342
NdeII GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
NlaIV GGNNCC 5 cut(s) 576, 650, 788, 946, 1386
NmuCI GTSAC 3 cut(s) 325, 412, 536
NsiI ATGCAT 1 cut(s) 512
NspI RCATGY 2 cut(s) 723, 1264
OliI CACNNNNGTG 1 cut(s) 520
PagI TCATGA 1 cut(s) 988
PciI ACATGT 1 cut(s) 1260
PfeI GAWTC 6 cut(s) 158, 614, 815, 974, 1002, 1094
Pfl23II CGTACG 1 cut(s) 99
PkrI GCNGC 6 cut(s) 26, 172, 1114, 1338, 1341, 1344
PleI GAGTC 2 cut(s) 109, 1203
PpsI GAGTC 2 cut(s) 109, 1203
PpuMI RGGWCCY 1 cut(s) 1045
PscI ACATGT 1 cut(s) 1260
Psp5II RGGWCCY 1 cut(s) 1045
PspLI CGTACG 1 cut(s) 99
PspN4I GGNNCC 5 cut(s) 576, 650, 788, 946, 1386
PspPI GGNCC 5 cut(s) 787, 961, 1024, 1045, 1330
PspPPI RGGWCCY 1 cut(s) 1045
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 101, 224, 1131
RsaNI GTAC 3 cut(s) 100, 223, 1130
RseI CAYNNNNRTG 3 cut(s) 419, 520, 993
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 5 cut(s) 504, 701, 828, 1101, 1424
SatI GCNGC 6 cut(s) 25, 171, 1113, 1337, 1340, 1343
Sau3AI GATC 6 cut(s) 67, 574, 598, 1217, 1270, 1437
Sau96I GGNCC 5 cut(s) 787, 961, 1024, 1045, 1330
SchI GAGTC 2 cut(s) 109, 1203
SduI GDGCHC 2 cut(s) 653, 949
SfaNI GCATC 2 cut(s) 884, 1186
SinI GGWCC 5 cut(s) 787, 961, 1024, 1045, 1330
SmiMI CAYNNNNRTG 3 cut(s) 419, 520, 993
SmlI CTYRAG 3 cut(s) 1028, 1100, 1346
SmoI CTYRAG 3 cut(s) 1028, 1100, 1346
Sse9I AATT 7 cut(s) 76, 396, 731, 829, 1227, 1427, 1475
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 902
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 826, 1076, 1129
TaiI ACGT 2 cut(s) 105, 438
TaqI TCGA 5 cut(s) 137, 264, 705, 1172, 1448
TasI AATT 7 cut(s) 76, 396, 731, 829, 1227, 1427, 1475
TfiI GAWTC 6 cut(s) 158, 614, 815, 974, 1002, 1094
Tru1I TTAA 5 cut(s) 504, 701, 828, 1101, 1424
Tru9I TTAA 5 cut(s) 504, 701, 828, 1101, 1424
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 3 cut(s) 325, 412, 536
TseI GCWGC 6 cut(s) 24, 170, 1112, 1336, 1339, 1342
Tsp45I GTSAC 3 cut(s) 325, 412, 536
TspDTI ATGAA 4 cut(s) 351, 408, 762, 828
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 1100
VpaK11BI GGWCC 5 cut(s) 787, 961, 1024, 1045, 1330
XapI RAATTY 2 cut(s) 76, 396
XceI RCATGY 2 cut(s) 723, 1264
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 902
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.