Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013810

Physical Location & Seq

Genomic Coordinates Forward (+)

16451876 .. 16453260

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCATTATCCTAACAACAGAACCGAATTCGTCGGAGCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTTATTGTCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGTTTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTTGGATTCAGACACTTGTCAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGAATTGAAAAGAATCATCAACAAGAAGAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAGAGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAGAAGAATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGATCAGAGATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAACCGCCGAAGATGCGGCTCGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCCTTTGTGGATTACACGTCTTCAGTTTCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAGGCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGAGGAGGAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTTGGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

29.45

Weight (kDa)

6.02

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	135 - 183	2.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34410
fragaria_vesca	FvH4_2g06050 FvH4_2g06060
malus_domestica	MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica	Prupe.8G125100_v2.0.a1
pyrus_communis	pycom05g07360 pycom10g07840
rosa_chinensis	RchiOBHm_Chr6g0257181
rosa_laevigata	RLG00000014680
rosa_multiflora	Rmu_sc0001228.1_g000009
rosa_rugosa	Rorug05G0574400
rosa_samantha	Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana	Rw6G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	3 cut(s)	185, 263, 536
AciI	CCGC	6 cut(s)	185, 359, 369, 501, 512, 534
AclWI	GGATC	2 cut(s)	236, 452
AcsI	RAATTY	2 cut(s)	26, 437
AcuI	CTGAAG	2 cut(s)	579, 753
AcvI	CACGTG	2 cut(s)	118, 476
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	51, 152, 580
AflIII	ACRYGT	4 cut(s)	115, 473, 475, 588
AgsI	TTSAA	2 cut(s)	281, 677
AhlI	ACTAGT	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	591
AluBI	AGCT	5 cut(s)	38, 88, 339, 446, 521
AluI	AGCT	5 cut(s)	38, 88, 339, 446, 521
Alw21I	GWGCWC	2 cut(s)	40, 341
Alw26I	GTCTC	2 cut(s)	106, 245
AlwI	GGATC	2 cut(s)	236, 452
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	443, 614
ApoI	RAATTY	2 cut(s)	26, 437
AspLEI	GCGC	5 cut(s)	145, 185, 265, 650, 662
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	40, 341
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbrPI	CACGTG	2 cut(s)	118, 476
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	40, 341
BbvI	GCAGC	2 cut(s)	455, 601
BccI	CCATC	1 cut(s)	739
BceAI	ACGGC	2 cut(s)	130, 156
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	106, 245
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	223
BfoI	RGCGCY	3 cut(s)	146, 651, 663
BisI	GCNGC	4 cut(s)	444, 513, 534, 615
BlsI	GCNGC	4 cut(s)	445, 514, 535, 616
Bme1390I	CCNGG	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	516
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	2 cut(s)	118, 476
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	194, 345, 428, 547, 554
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 152, 580
Bse1I	ACTGG	3 cut(s)	162, 651, 802
Bse3DI	GCAATG	1 cut(s)	692
BseDI	CCNNGG	5 cut(s)	194, 345, 428, 547, 554
BseGI	GGATG	2 cut(s)	242, 732
BseLI	CCNNNNNNNGG	3 cut(s)	51, 152, 580
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	138, 438
BseNI	ACTGG	3 cut(s)	162, 651, 802
BseRI	GAGGAG	4 cut(s)	426, 711, 714, 734
BseXI	GCAGC	2 cut(s)	455, 601
Bsh1236I	CGCG	3 cut(s)	185, 263, 536
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	40, 341
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	52, 77
BslI	CCNNNNNNNGG	3 cut(s)	51, 152, 580
BsmAI	GTCTC	2 cut(s)	106, 245
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	40, 341
Bsp143I	GATC	5 cut(s)	120, 228, 450, 457, 526
BspACI	CCGC	6 cut(s)	185, 359, 369, 501, 512, 534
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	137, 439
BspFNI	CGCG	3 cut(s)	185, 263, 536
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	236, 452
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	692
BsrI	ACTGG	3 cut(s)	162, 651, 802
BssECI	CCNNGG	5 cut(s)	194, 345, 428, 547, 554
BssMI	GATC	5 cut(s)	120, 228, 450, 457, 526
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	428, 554
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	3 cut(s)	297, 325, 377
BstACI	GRCGYC	1 cut(s)	143
BstBAI	YACGTR	2 cut(s)	118, 476
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	2 cut(s)	124, 447
BstDSI	CCRYGG	2 cut(s)	345, 547
BstF5I	GGATG	2 cut(s)	242, 732
BstFNI	CGCG	3 cut(s)	185, 263, 536
BstH2I	RGCGCY	3 cut(s)	146, 651, 663
BstHHI	GCGC	5 cut(s)	145, 185, 265, 650, 662
BstKTI	GATC	5 cut(s)	123, 231, 453, 460, 529
BstMAI	GTCTC	2 cut(s)	106, 245
BstMBI	GATC	5 cut(s)	120, 228, 450, 457, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 509, 518
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	3 cut(s)	185, 263, 536
BstV1I	GCAGC	2 cut(s)	455, 601
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	553
BtgI	CCRYGG	2 cut(s)	345, 547
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	242, 732
BtsIMutI	CAGTG	3 cut(s)	169, 180, 658
Cac8I	GCNNGC	1 cut(s)	646
CfoI	GCGC	5 cut(s)	145, 185, 265, 650, 662
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	489
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	2 cut(s)	124, 447
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	5 cut(s)	122, 230, 452, 459, 528
DpnII	GATC	5 cut(s)	120, 228, 450, 457, 526
Eam1104I	CTCTTC	3 cut(s)	297, 325, 377
EarI	CTCTTC	3 cut(s)	297, 325, 377
Ecl136II	GAGCTC	2 cut(s)	38, 339
Eco130I	CCWWGG	2 cut(s)	428, 554
Eco24I	GRGCYC	2 cut(s)	40, 341
Eco53kI	GAGCTC	2 cut(s)	38, 339
Eco57I	CTGAAG	2 cut(s)	579, 753
Eco72I	CACGTG	2 cut(s)	118, 476
Eco88I	CYCGRG	1 cut(s)	516
EcoICRI	GAGCTC	2 cut(s)	38, 339
EcoRI	GAATTC	1 cut(s)	26
EcoT14I	CCWWGG	2 cut(s)	428, 554
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	40, 341
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	428, 554
FaiI	YATR	5 cut(s)	525, 626, 716, 734, 797
FauI	CCCGC	2 cut(s)	178, 362
Fnu4HI	GCNGC	4 cut(s)	444, 513, 534, 615
FokI	GGATG	2 cut(s)	249, 739
FriOI	GRGCYC	2 cut(s)	40, 341
Fsp4HI	GCNGC	4 cut(s)	444, 513, 534, 615
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	5 cut(s)	144, 184, 264, 649, 661
GluI	GCNGC	4 cut(s)	444, 513, 534, 615
GsuI	CTGGAG	1 cut(s)	24
HaeII	RGCGCY	3 cut(s)	146, 651, 663
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	52, 77
HhaI	GCGC	5 cut(s)	145, 185, 265, 650, 662
Hin1I	GRCGYC	1 cut(s)	143
Hin6I	GCGC	5 cut(s)	143, 183, 263, 648, 660
HinP1I	GCGC	5 cut(s)	143, 183, 263, 648, 660
HinfI	GANTC	6 cut(s)	203, 286, 543, 668, 764, 773
HpaII	CCGG	2 cut(s)	52, 77
HphI	GGTGA	1 cut(s)	66
Hpy188I	TCNGA	5 cut(s)	35, 208, 273, 455, 772
Hpy188III	TCNNGA	2 cut(s)	379, 777
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	227, 356
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	117, 475, 590
HpyCH4V	TGCA	5 cut(s)	4, 112, 443, 644, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 509, 518
HpyF3I	CTNAG	2 cut(s)	124, 447
HpySE526I	ACGT	3 cut(s)	117, 475, 590
Hsp92I	GRCGYC	1 cut(s)	143
HspAI	GCGC	5 cut(s)	143, 183, 263, 648, 660
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	120, 228, 450, 457, 526
LmnI	GCTCC	5 cut(s)	35, 43, 64, 79, 629
Lsp1109I	GCAGC	2 cut(s)	455, 601
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	3 cut(s)	117, 475, 590
MaeIII	GTNAC	5 cut(s)	72, 164, 248, 320, 404
MalI	GATC	5 cut(s)	122, 230, 452, 459, 528
MboI	GATC	5 cut(s)	120, 228, 450, 457, 526
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	40, 341
MluCI	AATT	4 cut(s)	26, 276, 437, 786
Mly113I	GGCGCC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	13, 180
MnlI	CCTC	7 cut(s)	204, 378, 404, 689, 692, 695, 712
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	52, 77
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	3 cut(s)	185, 263, 536
MwoI	GCNNNNNNNGC	3 cut(s)	356, 509, 518
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	5 cut(s)	120, 228, 450, 457, 526
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	72, 164
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	6 cut(s)	203, 286, 543, 668, 764, 773
PkrI	GCNGC	4 cut(s)	445, 514, 535, 616
PluTI	GGCGCC	1 cut(s)	146
PmaCI	CACGTG	2 cut(s)	118, 476
PmlI	CACGTG	2 cut(s)	118, 476
Ppu21I	YACGTR	2 cut(s)	118, 476
PshAI	GACNNNNGTC	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	40, 341
PspCI	CACGTG	2 cut(s)	118, 476
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
SacI	GAGCTC	2 cut(s)	40, 341
SatI	GCNGC	4 cut(s)	444, 513, 534, 615
Sau3AI	GATC	5 cut(s)	120, 228, 450, 457, 526
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	40, 341
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	223
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	26, 276, 437, 786
SsiI	CCGC	6 cut(s)	185, 359, 369, 501, 512, 534
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	2 cut(s)	40, 341
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	428, 554
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	3 cut(s)	120, 478, 593
TaqI	TCGA	4 cut(s)	231, 495, 517, 529
TasI	AATT	4 cut(s)	26, 276, 437, 786
TauI	GCSGC	2 cut(s)	515, 536
TfiI	GAWTC	6 cut(s)	203, 286, 543, 668, 764, 773
TscAI	CASTG	3 cut(s)	169, 180, 658
TseFI	GTSAC	2 cut(s)	72, 164
TseI	GCWGC	2 cut(s)	443, 614
Tsp45I	GTSAC	2 cut(s)	72, 164
TspDTI	ATGAA	2 cut(s)	591, 743
TspGWI	ACGGA	2 cut(s)	536, 708
TspRI	CASTG	3 cut(s)	169, 180, 658
XapI	RAATTY	2 cut(s)	26, 437
XhoI	CTCGAG	1 cut(s)	516
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.