Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013810

Physical Location & Seq

Genomic Coordinates Reverse (-)

10364445 .. 10365278

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCAATATCCCTACAAGCGACTCAAGCTCTCCGACACCCAGCCCGACGACCCGGCCACACTTGAATTTCAGTCTCCGCCGCCGCCTCACCGCCTTACCCAAGACCAAGAATACGCGGTAATGGTCTCCACGCTTCGAAACGTCGTCGCTGGAACCGCCACATCAGCCACCATGGACTTGAATTCTCCCCTCCCCTCACACGCCACTTCCTCACCCGGATATAATACTAGTACTAACTGCTACAGCAACACTCTCTTGGCGCCGTCCGATTTGGACACCTGCCACGTGTGCAAAATCAAGGGGTGTCTCGGGTGTATTTTGTTCCCGCCACCGCCAGCAGCTCACTCTCAGGACGAAAAGGGAGGTAATTACAAAAAGGGGCCGAAGAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGAGGCCTTGGGGCAAATGGGCAGCCGAGATTCGAGACCCGAGACGGGCCACTCGGGTCTGGCTCGGCACGTTCACAACAGCCGAGGACGCGGCCCGAGCCTACGACAAAGCTGCAATCGAGTTCCGTGGGCCCAGAGCAAAGCTCAATTTTCAGTTTCCGGACACAACATTGTTGGACCAAGAAAGTAATTCAACTCAACCACAACATCAACAGCAGCAGCAGCAGCAGCAGCAAGTAGTTACCGAGCAAGGAAACAAAAATGTCGAATTTTCGAGGGAAGTCGAAACGACGGCGATTTCGAAGGAAAATGAGTTCTGGGAAAAGATTGGGGAAGAGGAATTCCAGTGGATGACGATGCTGGATTTTGCTACTGATAATTCCTCAGATTCGGGGAATGCTCATAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

278

Amino Acids

31.17

Weight (kDa)

6.6

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	135 - 184	1.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34410
fragaria_vesca	FvH4_2g06050 FvH4_2g06060
malus_domestica	MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica	Prupe.8G125100_v2.0.a1
pyrus_communis	pycom05g07360 pycom10g07840
rosa_chinensis	RchiOBHm_Chr6g0257181
rosa_laevigata	RLG00000014680
rosa_multiflora	Rmu_sc0001228.1_g000009
rosa_rugosa	Rorug05G0574400
rosa_samantha	Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana	Rw6G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	259
AccII	CGCG	2 cut(s)	116, 512
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	9 cut(s)	77, 80, 83, 91, 116, 156, 326, 332, 512
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	4 cut(s)	65, 181, 689, 761
AcvI	CACGTG	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	65, 181, 615
AhlI	ACTAGT	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	28, 341, 533, 565
AluI	AGCT	4 cut(s)	28, 341, 533, 565
Alw26I	GTCTC	5 cut(s)	78, 130, 311, 450, 457
Ama87I	CYCGRG	4 cut(s)	308, 460, 474, 516
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	6 cut(s)	54, 380, 425, 468, 513, 551
ApaI	GGGCCC	1 cut(s)	555
ApeKI	GCWGC	9 cut(s)	338, 443, 533, 637, 640, 643, 646, 649, 652
ApoI	RAATTY	4 cut(s)	65, 181, 689, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	6 cut(s)	380, 468, 514, 551, 552, 598
AsuC2I	CCSGG	2 cut(s)	53, 216
AsuHPI	GGTGA	3 cut(s)	80, 204, 406
AsuII	TTCGAA	2 cut(s)	136, 722
AvaI	CYCGRG	4 cut(s)	308, 460, 474, 516
AvaII	GGWCC	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	555
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbrPI	CACGTG	1 cut(s)	286
BbvI	GCAGC	9 cut(s)	350, 455, 520, 649, 652, 655, 658, 661, 664
BceAI	ACGGC	2 cut(s)	247, 729
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BcnI	CCSGG	2 cut(s)	53, 216
BcoDI	GTCTC	5 cut(s)	78, 130, 311, 450, 457
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	241, 406
BfoI	RGCGCY	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	53, 216
Bme18I	GGWCC	1 cut(s)	598
BmeT110I	CYCGRG	4 cut(s)	308, 460, 474, 516
BmgT120I	GGNCC	6 cut(s)	380, 468, 514, 551, 552, 598
BmiI	GGNNCC	4 cut(s)	154, 261, 381, 553
BmrFI	CCNGG	2 cut(s)	53, 216
BmsI	GCATC	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
Bpu14I	TTCGAA	2 cut(s)	136, 722
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	53, 216
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	130, 450
BsaJI	CCNNGG	4 cut(s)	171, 428, 504, 547
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	766
BseAI	TCCGGA	1 cut(s)	580
BseDI	CCNNGG	4 cut(s)	171, 428, 504, 547
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	362, 819
BseNI	ACTGG	1 cut(s)	766
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	9 cut(s)	350, 455, 520, 649, 652, 655, 658, 661, 664
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	116, 512
BshFI	GGCC	6 cut(s)	56, 382, 427, 470, 515, 553
BshNI	GGYRCC	1 cut(s)	259
BsiHKCI	CYCGRG	4 cut(s)	308, 460, 474, 516
BsiSI	CCGG	3 cut(s)	53, 216, 581
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	5 cut(s)	78, 130, 311, 450, 457
BsmBI	CGTCTC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	6 cut(s)	56, 382, 427, 470, 515, 553
Bso31I	GGTCTC	2 cut(s)	130, 450
BsoBI	CYCGRG	4 cut(s)	308, 460, 474, 516
Bsp119I	TTCGAA	2 cut(s)	136, 722
Bsp120I	GGGCCC	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	9 cut(s)	77, 80, 83, 91, 116, 156, 326, 332, 512
BspANI	GGCC	6 cut(s)	56, 382, 427, 470, 515, 553
BspCNI	CTCAG	2 cut(s)	361, 818
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	116, 512
BspLI	GGNNCC	4 cut(s)	154, 261, 381, 553
BspMI	ACCTGC	1 cut(s)	287
BspT104I	TTCGAA	2 cut(s)	136, 722
BspT107I	GGYRCC	1 cut(s)	259
BspTNI	GGTCTC	2 cut(s)	130, 450
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	4 cut(s)	171, 428, 504, 547
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	2 cut(s)	171, 428
Bst6I	CTCTTC	2 cut(s)	383, 750
BstACI	GRCGYC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	286
BstBI	TTCGAA	2 cut(s)	136, 722
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	348, 805
BstDSI	CCRYGG	2 cut(s)	171, 547
BstF5I	GGATG	1 cut(s)	777
BstFNI	CGCG	2 cut(s)	116, 512
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstMAI	GTCTC	5 cut(s)	78, 130, 311, 450, 457
BstSCI	CCNGG	2 cut(s)	51, 214
BstSFI	CTRYAG	2 cut(s)	241, 406
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	2 cut(s)	116, 512
BstV1I	GCAGC	9 cut(s)	350, 455, 520, 649, 652, 655, 658, 661, 664
BsuRI	GGCC	6 cut(s)	56, 382, 427, 470, 515, 553
BtgI	CCRYGG	2 cut(s)	171, 547
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	773
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	6 cut(s)	380, 468, 514, 551, 552, 598
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	348, 805
DinI	GGCGCC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	383, 750
EarI	CTCTTC	2 cut(s)	383, 750
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	171, 428
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	2 cut(s)	130, 450
Eco47I	GGWCC	1 cut(s)	598
Eco72I	CACGTG	1 cut(s)	286
Eco88I	CYCGRG	4 cut(s)	308, 460, 474, 516
EcoRI	GAATTC	2 cut(s)	181, 761
EcoT14I	CCWWGG	2 cut(s)	171, 428
EcoT38I	GRGCYC	1 cut(s)	555
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	171, 428
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 222, 825
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	6 cut(s)	56, 382, 427, 470, 515, 553
HapII	CCGG	3 cut(s)	53, 216, 581
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	21, 451, 809
HpaII	CCGG	3 cut(s)	53, 216, 581
HphI	GGTGA	3 cut(s)	80, 204, 406
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	3 cut(s)	34, 268, 808
Hpy188III	TCNNGA	3 cut(s)	350, 455, 581
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	4 cut(s)	50, 146, 149, 715
HpyAV	CCTTC	1 cut(s)	718
HpyCH4IV	ACGT	3 cut(s)	141, 285, 491
HpyCH4V	TGCA	3 cut(s)	4, 291, 536
HpyF3I	CTNAG	2 cut(s)	348, 805
HpySE526I	ACGT	3 cut(s)	141, 285, 491
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	260
KasI	GGCGCC	1 cut(s)	259
Kpn2I	TCCGGA	1 cut(s)	580
Lsp1109I	GCAGC	9 cut(s)	350, 455, 520, 649, 652, 655, 658, 661, 664
LweI	GCATC	1 cut(s)	768
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	141, 285, 491
MaeIII	GTNAC	1 cut(s)	661
MboII	GAAGA	5 cut(s)	397, 400, 409, 412, 767
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	8 cut(s)	65, 181, 367, 568, 610, 689, 761, 799
Mly113I	GGCGCC	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	2 cut(s)	57, 576
MroI	TCCGGA	1 cut(s)	580
MspI	CCGG	3 cut(s)	53, 216, 581
MspR9I	CCNGG	2 cut(s)	53, 216
Mva1269I	GAATGC	1 cut(s)	823
MvnI	CGCG	2 cut(s)	116, 512
NarI	GGCGCC	1 cut(s)	260
NciI	CCSGG	2 cut(s)	53, 216
NcoI	CCATGG	1 cut(s)	171
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	4 cut(s)	154, 261, 381, 553
NmeAIII	GCCGAG	3 cut(s)	465, 472, 529
NspV	TTCGAA	2 cut(s)	136, 722
PaqCI	CACCTGC	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	719
PctI	GAATGC	1 cut(s)	823
PfeI	GAWTC	2 cut(s)	451, 809
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	263
PmaCI	CACGTG	1 cut(s)	286
PmlI	CACGTG	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	286
PspCI	CACGTG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	4 cut(s)	154, 261, 381, 553
PspOMI	GGGCCC	1 cut(s)	551
PspPI	GGNCC	6 cut(s)	380, 468, 514, 551, 552, 598
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau96I	GGNCC	6 cut(s)	380, 468, 514, 551, 552, 598
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	53, 216
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	9 cut(s)	30, 144, 281, 288, 343, 367, 494, 535, 567
SfaNI	GCATC	1 cut(s)	768
SfcI	CTRYAG	2 cut(s)	241, 406
SfoI	GGCGCC	1 cut(s)	261
SfuI	TTCGAA	2 cut(s)	136, 722
SinI	GGWCC	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	8 cut(s)	65, 181, 367, 568, 610, 689, 761, 799
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	9 cut(s)	77, 80, 83, 91, 116, 156, 326, 332, 512
SspDI	GGCGCC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	51, 214
StyI	CCWWGG	2 cut(s)	171, 428
TaiI	ACGT	3 cut(s)	144, 288, 494
TaqI	TCGA	7 cut(s)	136, 454, 540, 687, 695, 705, 722
TasI	AATT	8 cut(s)	65, 181, 367, 568, 610, 689, 761, 799
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	3 cut(s)	82, 85, 515
TfiI	GAWTC	2 cut(s)	451, 809
TscAI	CASTG	1 cut(s)	773
TseI	GCWGC	9 cut(s)	338, 443, 533, 637, 640, 643, 646, 649, 652
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	4 cut(s)	65, 181, 689, 761
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.