RchiOBHm_Chr6g0257181

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013810
Physical Location & Seq
Reverse (-)
12450926 .. 12451995
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23068

Sequence Viewer

Length: 807 bp
ATGCAAAACTCCTTCAATCGATCCAAACTCGACACCGCCGGAGATCCACAACAGTTGACCCAAAACCCAGTTCCTCCTCCGCCGCCTCGCCGCCTCACCCAAGAGCAAGAACTCGCCGTAATCGTCTCCGCTCTGCGAAACGTCGTCGCCGGCACCACTACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCATTACCCGGCCGCCGCTTCCTCCTCCTCCTCTCCCGCCCTATTCGAAGCGTCTGATGCCGAGACGTGTCCGGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAACAAGAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAATTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCCGCCGAAATCCGAGACCCGAGGAGGGCCACTCGGGTCTGGCTCGGCACGTTCCACACTGCCGAGGAGGCGGCCCGTGCATATGACAAGGCTGCCATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACGCCGCCCACACAGCCCATTCAAGAACCCCAGAAGCAGCAGACGGTTGTTACAGATACTAAGCAAGAGAACAAGAGCAAGGATTCAAATGAGATGGAATGCGAGTTCTGGGAAAGGATCGGGGAAGACGAGCTGTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCCGGAAATGCTCACAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

268

Amino Acids

30.09

Weight (kDa)

6.91

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 3.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 346
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 516
AccIII TCCGGA 1 cut(s) 547
AclWI GGATC 3 cut(s) 15, 38, 707
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 202, 357, 433, 547
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 6 cut(s) 16, 175, 281, 605, 669, 722
AjiI CACGTC 1 cut(s) 261
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 671, 703
AluBI AGCT 1 cut(s) 715
AluI AGCT 1 cut(s) 715
Alw26I GTCTC 3 cut(s) 130, 251, 417
AlwI GGATC 3 cut(s) 15, 38, 707
Ama87I CYCGRG 2 cut(s) 427, 441
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 5 cut(s) 204, 392, 408, 435, 480
ApeKI GCWGC 4 cut(s) 285, 388, 500, 619
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 408, 435, 481, 518
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 2 cut(s) 427, 441
AvaII GGWCC 1 cut(s) 518
BanI GGYRCC 2 cut(s) 152, 346
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 272, 400, 487, 631
BccI CCATC 2 cut(s) 670, 733
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 130, 251, 417
BglI GCCNNNNNGGC 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 2 cut(s) 427, 441
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 408, 435, 481, 518
BmiI GGNNCC 3 cut(s) 154, 348, 520
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 241, 284
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 516, 548
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 165, 289, 395, 428, 471
BsaWI WCCGGW 2 cut(s) 265, 547
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 357, 433, 547
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 68
BseAI TCCGGA 1 cut(s) 547
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 165, 289, 395, 428, 471
BseGI GGATG 2 cut(s) 299, 735
BseLI CCNNNNNNNGG 4 cut(s) 202, 357, 433, 547
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 7 cut(s) 66, 208, 211, 214, 335, 445, 488
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 4 cut(s) 272, 400, 487, 631
Bsh1236I CGCG 1 cut(s) 516
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 206, 394, 410, 437, 482
BshNI GGYRCC 2 cut(s) 152, 346
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 427, 441
BsiSI CCGG 6 cut(s) 39, 150, 203, 266, 548, 786
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 4 cut(s) 202, 357, 433, 547
BsmAI GTCTC 3 cut(s) 130, 251, 417
BsmBI CGTCTC 2 cut(s) 130, 251
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 5 cut(s) 206, 394, 410, 437, 482
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 427, 441
Bsp119I TTCGAA 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 4 cut(s) 20, 43, 699, 754
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 5 cut(s) 206, 394, 410, 437, 482
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 154, 348, 520
BspPI GGATC 3 cut(s) 15, 38, 707
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 152, 346
BspTNI GGTCTC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 5 cut(s) 165, 289, 395, 428, 471
BssMI GATC 4 cut(s) 20, 43, 699, 754
BssNI GRCGYC 1 cut(s) 584
BssT1I CCWWGG 3 cut(s) 165, 289, 395
Bst4CI ACNGT 4 cut(s) 54, 628, 726, 800
Bst6I CTCTTC 2 cut(s) 188, 350
BstACI GRCGYC 1 cut(s) 584
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 151, 312
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 299, 735
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 4 cut(s) 23, 46, 702, 757
BstMAI GTCTC 3 cut(s) 130, 251, 417
BstMBI GATC 4 cut(s) 20, 43, 699, 754
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 251, 294, 476, 485, 595, 791
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 4 cut(s) 272, 400, 487, 631
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 5 cut(s) 206, 394, 410, 437, 482
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 299, 735
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 731
Cac8I GCNNGC 2 cut(s) 151, 312
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 408, 435, 481, 518
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 234, 592
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 166
DdeI CTNAG 1 cut(s) 642
DpnI GATC 4 cut(s) 22, 45, 701, 756
DpnII GATC 4 cut(s) 20, 43, 699, 754
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 188, 350
EarI CTCTTC 2 cut(s) 188, 350
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 165, 289, 395
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 427, 441
EcoT14I CCWWGG 3 cut(s) 165, 289, 395
ErhI CCWWGG 3 cut(s) 165, 289, 395
Esp3I CGTCTC 2 cut(s) 130, 251
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 490, 492
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 504
FatI CATG 1 cut(s) 165
FauI CCCGC 2 cut(s) 238, 315
FauNDI CATATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 754
FokI GGATG 2 cut(s) 306, 742
HaeIII GGCC 5 cut(s) 206, 394, 410, 437, 482
HapII CCGG 6 cut(s) 39, 150, 203, 266, 548, 786
HgaI GACGC 2 cut(s) 234, 592
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 665, 767
HpaII CCGG 6 cut(s) 39, 150, 203, 266, 548, 786
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 250, 422, 766
Hpy188III TCNNGA 2 cut(s) 548, 605
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 4 cut(s) 146, 149, 586, 766
HpyAV CCTTC 3 cut(s) 22, 198, 337
HpyCH4III ACNGT 4 cut(s) 54, 628, 726, 800
HpyCH4IV ACGT 3 cut(s) 141, 260, 458
HpyCH4V TGCA 3 cut(s) 4, 297, 488
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 294, 476, 485, 595, 791
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 3 cut(s) 141, 260, 458
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 547
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 20, 43, 699, 754
Lsp1109I GCAGC 4 cut(s) 272, 400, 487, 631
LweI GCATC 2 cut(s) 241, 284
MaeII ACGT 3 cut(s) 141, 260, 458
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 22, 45, 701, 756
MbiI CCGCTC 1 cut(s) 131
MboI GATC 4 cut(s) 20, 43, 699, 754
MboII GAAGA 6 cut(s) 175, 352, 367, 376, 379, 719
MflI RGATCY 1 cut(s) 43
MluCI AATT 4 cut(s) 276, 298, 370, 535
MmeI TCCRAC 1 cut(s) 744
MroI TCCGGA 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 391
MspI CCGG 6 cut(s) 39, 150, 203, 266, 548, 786
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 686
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 6 cut(s) 251, 294, 476, 485, 595, 791
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 490
NdeII GATC 4 cut(s) 20, 43, 699, 754
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 154, 348, 520
NmeAIII GCCGAG 3 cut(s) 280, 432, 496
NspV TTCGAA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 708
PctI GAATGC 1 cut(s) 686
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 665, 767
PspN4I GGNNCC 3 cut(s) 154, 348, 520
PspPI GGNCC 4 cut(s) 408, 435, 481, 518
PsuI RGATCY 1 cut(s) 43
Sau3AI GATC 4 cut(s) 20, 43, 699, 754
Sau96I GGNCC 4 cut(s) 408, 435, 481, 518
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 144, 263, 461, 717, 754
SfaNI GCATC 2 cut(s) 241, 284
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 518
Sse9I AATT 4 cut(s) 276, 298, 370, 535
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 3 cut(s) 165, 289, 395
TaaI ACNGT 4 cut(s) 54, 628, 726, 800
TaiI ACGT 3 cut(s) 144, 263, 461
TaqI TCGA 5 cut(s) 19, 30, 240, 563, 581
TasI AATT 4 cut(s) 276, 298, 370, 535
TauI GCSGC 8 cut(s) 85, 93, 209, 212, 394, 413, 482, 589
TfiI GAWTC 2 cut(s) 665, 767
TscAI CASTG 2 cut(s) 472, 731
TseI GCWGC 4 cut(s) 285, 388, 500, 619
TspDTI ATGAA 1 cut(s) 581
TspRI CASTG 2 cut(s) 472, 731
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.