MD05G1080900.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013810
Physical Location & Seq
Reverse (-)
16881709 .. 16882533
825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1080900.v1.1.491

Sequence Viewer

Length: 825 bp
ATGCAATATCCCTACAAGCGACTCAAGCTCTCCGATACCCAGCCCGACGACCCGGCCACACTTCAATTTCAGTCTCCGCCGCCGCCTCACCGCCTTACCCAAGACCAAGAATACGCGGTAATGGTCTCCACGCTTCGAAACGTCGTCGCTGGAACAGCCACATCAGCCACCATGGACTTGAATTCTCTCCTCCCTTCACACGCCACTTACTCACCGCGATATACTACTAGTACTAACTGCTACAGCAACACTCTCTTGGCGCCGTCCGATTTGGACACCTGCCACGTCTGCAAAATCAAGGGGTGTCTCGGGTGTATTTTGTTCCCTCCACCGCCAGCAGCTCACTCTCAGGAGGAAAAGGGAGGTAATTACAAAAAGGGGCCGAAGAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGAGGCCTTGGGGCAAATGGGCAGCCGAGATTCGAGACCCGAGACGGGCGACTCGGGTCTGGCTCGGCACGTTTACAACCGCCGAGGACGCGGCCCGAGCCTACGACAAAGCTGCAATCGAGTTCCGTGGGCCCAGAGCAAAGCTCAATTTTCCGTTTCCGGACACAACATTGTTGGCCCAAGAAAGTAATTCAACTCAACCACCACATCAACAGCAGCAGCAAGTAGTTACCGAGCAGGGAAACAAAAATGTCGAATTTTCCAGGGAAGTCGAAACGACGGCGATTTTGAAGGAAAATGAGCTCTGGGAAAAGATTGGGGAAGAGGAATTCCAACAGTGGATGACGATGCTGGATTTTGCTACTGATAATTCCTCAGATTCGGGGAATGCTCATAGTATTTGA

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

8.2

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 135 - 184 1.4e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 3 cut(s) 116, 217, 512
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 9 cut(s) 77, 80, 83, 91, 116, 215, 332, 501, 512
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 181, 677, 749
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 4 cut(s) 65, 181, 615, 712
AhlI ACTAGT 1 cut(s) 227
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 5 cut(s) 28, 341, 533, 565, 724
AluI AGCT 5 cut(s) 28, 341, 533, 565, 724
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 5 cut(s) 78, 130, 311, 450, 457
Ama87I CYCGRG 4 cut(s) 308, 460, 474, 516
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 6 cut(s) 54, 380, 425, 513, 551, 597
ApaI GGGCCC 1 cut(s) 555
ApeKI GCWGC 5 cut(s) 338, 443, 533, 637, 640
ApoI RAATTY 3 cut(s) 181, 677, 749
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 5 cut(s) 380, 514, 551, 552, 598
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 80, 204, 406
AsuII TTCGAA 1 cut(s) 136
AvaI CYCGRG 4 cut(s) 308, 460, 474, 516
BaeGI GKGCMC 1 cut(s) 555
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 555, 726
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 5 cut(s) 350, 455, 520, 649, 652
BceAI ACGGC 2 cut(s) 247, 717
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 1 cut(s) 685
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 5 cut(s) 78, 130, 311, 450, 457
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 241, 406
BfoI RGCGCY 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 8 cut(s) 80, 83, 339, 444, 513, 534, 638, 641
BlsI GCNGC 8 cut(s) 81, 84, 340, 445, 514, 535, 639, 642
BmcAI AGTACT 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 53, 685
BmeT110I CYCGRG 4 cut(s) 308, 460, 474, 516
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 380, 514, 551, 552, 598
BmiI GGNNCC 3 cut(s) 261, 381, 553
BmrFI CCNGG 2 cut(s) 53, 685
BmsI GCATC 1 cut(s) 759
BoxI GACNNNNGTC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 549, 581
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 260
BsaI GGTCTC 2 cut(s) 130, 450
BsaJI CCNNGG 5 cut(s) 171, 428, 504, 547, 684
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 466
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 5 cut(s) 171, 428, 504, 547, 684
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 362, 810
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 5 cut(s) 350, 455, 520, 649, 652
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 3 cut(s) 116, 217, 512
BshFI GGCC 6 cut(s) 56, 382, 427, 515, 553, 599
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 726
BsiHKCI CYCGRG 4 cut(s) 308, 460, 474, 516
BsiSI CCGG 2 cut(s) 53, 581
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 5 cut(s) 78, 130, 311, 450, 457
BsmBI CGTCTC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 6 cut(s) 56, 382, 427, 515, 553, 599
Bso31I GGTCTC 2 cut(s) 130, 450
BsoBI CYCGRG 4 cut(s) 308, 460, 474, 516
Bsp119I TTCGAA 1 cut(s) 136
Bsp120I GGGCCC 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 555, 726
Bsp13I TCCGGA 1 cut(s) 580
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 9 cut(s) 77, 80, 83, 91, 116, 215, 332, 501, 512
BspANI GGCC 6 cut(s) 56, 382, 427, 515, 553, 599
BspCNI CTCAG 2 cut(s) 361, 809
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 3 cut(s) 116, 217, 512
BspLI GGNNCC 3 cut(s) 261, 381, 553
BspMI ACCTGC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 2 cut(s) 130, 450
BssECI CCNNGG 5 cut(s) 171, 428, 504, 547, 684
BssNI GRCGYC 1 cut(s) 260
BssT1I CCWWGG 2 cut(s) 171, 428
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 2 cut(s) 383, 738
BstACI GRCGYC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 348, 796
BstDSI CCRYGG 2 cut(s) 171, 547
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 3 cut(s) 116, 217, 512
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 5 cut(s) 78, 130, 311, 450, 457
BstMWI GCNNNNNNNGC 6 cut(s) 25, 155, 164, 288, 509, 518
BstNI CCWGG 1 cut(s) 685
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 51, 683
BstSFI CTRYAG 2 cut(s) 241, 406
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 3 cut(s) 116, 217, 512
BstV1I GCAGC 5 cut(s) 350, 455, 520, 649, 652
BsuRI GGCC 6 cut(s) 56, 382, 427, 515, 553, 599
BtgI CCRYGG 2 cut(s) 171, 547
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 768
BtsIMutI CAGTG 1 cut(s) 764
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 5 cut(s) 380, 514, 551, 552, 598
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 172
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 348, 796
DinI GGCGCC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 383, 738
EarI CTCTTC 2 cut(s) 383, 738
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 724
Eco130I CCWWGG 2 cut(s) 171, 428
Eco147I AGGCCT 1 cut(s) 427
Eco24I GRGCYC 2 cut(s) 555, 726
Eco31I GGTCTC 2 cut(s) 130, 450
Eco53kI GAGCTC 1 cut(s) 724
Eco88I CYCGRG 4 cut(s) 308, 460, 474, 516
EcoICRI GAGCTC 1 cut(s) 724
EcoRI GAATTC 2 cut(s) 181, 749
EcoRII CCWGG 1 cut(s) 683
EcoT14I CCWWGG 2 cut(s) 171, 428
EcoT38I GRGCYC 2 cut(s) 555, 726
EgeI GGCGCC 1 cut(s) 261
EheI GGCGCC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 171, 428
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 173, 222, 816
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 8 cut(s) 80, 83, 339, 444, 513, 534, 638, 641
FokI GGATG 1 cut(s) 775
FriOI GRGCYC 2 cut(s) 555, 726
Fsp4HI GCNGC 8 cut(s) 80, 83, 339, 444, 513, 534, 638, 641
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 261
GluI GCNGC 8 cut(s) 80, 83, 339, 444, 513, 534, 638, 641
GsaI CCCAGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 6 cut(s) 56, 382, 427, 515, 553, 599
HapII CCGG 2 cut(s) 53, 581
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 4 cut(s) 21, 451, 472, 800
HpaII CCGG 2 cut(s) 53, 581
HphI GGTGA 3 cut(s) 80, 204, 406
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 3 cut(s) 34, 268, 799
Hpy188III TCNNGA 3 cut(s) 350, 455, 581
Hpy8I GTNNAC 1 cut(s) 495
Hpy99I CGWCG 4 cut(s) 50, 146, 149, 703
HpyAV CCTTC 2 cut(s) 204, 706
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 3 cut(s) 141, 285, 491
HpyCH4V TGCA 3 cut(s) 4, 291, 536
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 155, 164, 288, 509, 518
HpyF3I CTNAG 2 cut(s) 348, 796
HpySE526I ACGT 3 cut(s) 141, 285, 491
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 260
KasI GGCGCC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 580
Lsp1109I GCAGC 5 cut(s) 350, 455, 520, 649, 652
LweI GCATC 1 cut(s) 759
MaeI CTAG 1 cut(s) 228
MaeII ACGT 3 cut(s) 141, 285, 491
MaeIII GTNAC 1 cut(s) 649
MboII GAAGA 5 cut(s) 397, 400, 409, 412, 755
MhlI GDGCHC 2 cut(s) 555, 726
MluCI AATT 8 cut(s) 65, 181, 367, 568, 610, 677, 749, 790
Mly113I GGCGCC 1 cut(s) 260
MlyI GAGTC 2 cut(s) 15, 466
MmeI TCCRAC 1 cut(s) 778
MroI TCCGGA 1 cut(s) 580
MspI CCGG 2 cut(s) 53, 581
MspR9I CCNGG 2 cut(s) 53, 685
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 1 cut(s) 685
MvnI CGCG 3 cut(s) 116, 217, 512
MwoI GCNNNNNNNGC 6 cut(s) 25, 155, 164, 288, 509, 518
NarI GGCGCC 1 cut(s) 260
NciI CCSGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 171
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 3 cut(s) 261, 381, 553
NmeAIII GCCGAG 3 cut(s) 465, 472, 529
NspV TTCGAA 1 cut(s) 136
PaqCI CACCTGC 1 cut(s) 287
PceI AGGCCT 1 cut(s) 427
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 451, 800
PkrI GCNGC 8 cut(s) 81, 84, 340, 445, 514, 535, 639, 642
PleI GAGTC 2 cut(s) 15, 466
PluTI GGCGCC 1 cut(s) 263
PpsI GAGTC 2 cut(s) 15, 466
PshAI GACNNNNGTC 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 3 cut(s) 261, 381, 553
PspOMI GGGCCC 1 cut(s) 551
PspPI GGNCC 5 cut(s) 380, 514, 551, 552, 598
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 726
SatI GCNGC 8 cut(s) 80, 83, 339, 444, 513, 534, 638, 641
Sau96I GGNCC 5 cut(s) 380, 514, 551, 552, 598
ScaI AGTACT 1 cut(s) 232
SchI GAGTC 2 cut(s) 15, 466
ScrFI CCNGG 2 cut(s) 53, 685
SduI GDGCHC 2 cut(s) 555, 726
SfaNI GCATC 1 cut(s) 759
SfcI CTRYAG 2 cut(s) 241, 406
SfoI GGCGCC 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 8 cut(s) 65, 181, 367, 568, 610, 677, 749, 790
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 9 cut(s) 77, 80, 83, 91, 116, 215, 332, 501, 512
SspDI GGCGCC 1 cut(s) 259
SspMI CTAG 1 cut(s) 228
SstI GAGCTC 1 cut(s) 726
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 51, 683
StyI CCWWGG 2 cut(s) 171, 428
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 3 cut(s) 144, 288, 494
TaqI TCGA 5 cut(s) 136, 454, 540, 675, 693
TasI AATT 8 cut(s) 65, 181, 367, 568, 610, 677, 749, 790
TatI WGTACW 1 cut(s) 230
TauI GCSGC 3 cut(s) 82, 85, 515
TfiI GAWTC 2 cut(s) 451, 800
TscAI CASTG 1 cut(s) 764
TseI GCWGC 5 cut(s) 338, 443, 533, 637, 640
TspGWI ACGGA 2 cut(s) 536, 564
TspRI CASTG 1 cut(s) 764
XapI RAATTY 3 cut(s) 181, 677, 749
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.